We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
109.0
nTPM
HPA Brain:
121.7
nTPM
GTEx:
109.0
nTPM
FANTOM5:
42.7
Scaled Tags Per Million
Mouse:
3.2
nTPM
Allen mouse:
1.1
Expression energy
MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
121.7
Sample id
Sample description
nTPM
Cuneiform nucleus nTPM: 85.0
1830
Male, age 51, unknown
103.6
1833
Male, age 53, unknown
100.4
2019
Male, age 18, unknown
94.9
1870
Female, age 42, unknown
86.6
2411
Female, age 72, unknown
86.5
2586
Male, age 75, left hemisphere
80.3
2828
Female, age 72, unknown
80.2
2666
Male, age 74, left hemisphere
78.7
2219
Male, age 76, both hemispheres
76.4
1827
Male, age 72, unknown
62.2
Dorsal raphe nucleus nTPM: 59.3
2750
Male, age 76, both hemispheres
93.2
2016
Female, age 72, unknown
65.0
1828
Male, age 53, unknown
62.5
2047
Male, age 72, unknown
40.4
2298
Female, age 72, unknown
35.3
Inferior colliculus nTPM: 52.9
2849
Male, age 72, unknown
63.7
1848
Female, age 42, unknown
54.8
1890
Male, age 53, unknown
53.2
2097
Female, age 72, unknown
39.9
Median raphe nucleus nTPM: 47.9
2220
Male, age 76, midline
47.9
Periaquaductal grey, anterior nTPM: 54.0
2502
Female, age 75, unknown
60.4
1947
Male, age 18, unknown
53.6
1795
Male, age 51, unknown
47.8
Periaquaductal grey, dorsal nTPM: 46.9
2464
Female, age 72, unknown
63.4
1831
Male, age 72, unknown
45.6
2850
Male, age 76, both hemispheres
44.8
1840
Male, age 53, unknown
34.0
Periaquaductal grey, lateral nTPM: 49.0
2272
Male, age 74, both hemispheres
51.8
2053
Male, age 18, unknown
49.1
2140
Male, age 76, both hemispheres
46.0
Pretectal area nTPM: 52.2
1815
Male, age 53, unknown
70.2
2316
Male, age 76, right hemisphere
68.0
2667
Female, age 75, unknown
61.3
2825
Male, age 18, unknown
58.3
1817
Female, age 42, unknown
55.0
2407
Male, age 75, both hemispheres
54.7
2007
Male, age 72, unknown
54.5
2224
Female, age 72, unknown
48.0
2273
Male, age 74, both hemispheres
39.0
1944
Female, age 72, unknown
34.0
1816
Male, age 51, unknown
30.9
Red nucleus nTPM: 121.7
1865
Male, age 51, unknown
145.6
1904
Male, age 53, unknown
142.6
2823
Male, age 76, right hemisphere
141.0
2769
Male, age 72, unknown
138.8
2227
Male, age 72, unknown
135.7
2503
Female, age 72, unknown
132.0
1821
Female, age 72, unknown
123.1
2588
Male, age 74, left hemisphere
117.3
1954
Female, age 42, unknown
108.0
2785
Male, age 18, unknown
106.3
2584
Male, age 75, left hemisphere
88.5
2725
Female, age 75, unknown
82.0
Substantia nigra nTPM: 67.9
2699
Male, age 18, unknown
89.6
2583
Male, age 75, right hemisphere
83.4
2409
Female, age 72, unknown
82.9
1851
Male, age 51, unknown
77.3
2590
Female, age 75, unknown
68.8
2665
Male, age 74, both hemispheres
62.5
1889
Female, age 72, unknown
61.5
1941
Male, age 53, unknown
53.4
1916
Female, age 42, unknown
52.2
2241
Male, age 72, unknown
47.1
Superior colliculus nTPM: 63.1
1995
Male, age 72, unknown
93.1
1913
Female, age 42, unknown
84.5
1839
Male, age 51, unknown
69.7
1895
Male, age 76, right hemisphere
69.7
2668
Female, age 75, unknown
63.3
2587
Male, age 74, left hemisphere
62.4
2664
Male, age 75, both hemispheres
55.1
1796
Male, age 53, unknown
54.2
2087
Female, age 72, unknown
40.1
2261
Male, age 18, unknown
39.0
Ventral tegmental area nTPM: 65.7
2223
Female, age 72, unknown
97.3
2410
Female, age 72, unknown
72.3
2218
Male, age 76, both hemispheres
59.8
1942
Male, age 51, unknown
58.8
2021
Male, age 53, unknown
53.4
1915
Female, age 42, unknown
52.5
MIDBRAIN - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
109.0
GTEx sample id
Sample description
nTPM
Brain - Substantia nigra Average nTPM: 109.0
Samples: 139
Max nTPM: 307.5
Min nTPM: 32.3
Std nTPM: 45.1
Median nTPM: 103.0
GTEX-1LB8K-0011-R2a-SM-EZ6MQ
50-59 years, male
307.5
GTEX-ZE9C-0011-R2a-SM-4WKGH
60-69 years, male
261.7
GTEX-139TS-0011-R2b-SM-5J1MX
60-69 years, male
252.9
GTEX-13NYB-0011-R2a-SM-5MR3C
40-49 years, male
216.7
GTEX-11GS4-0011-R2a-SM-DO942
60-69 years, male
205.2
GTEX-131XH-0011-R2b-SM-5DUVY
50-59 years, male
197.2
GTEX-ZDXO-0011-R2b-SM-4WKFG
60-69 years, male
191.9
GTEX-OXRO-0011-R2A-SM-3NB1W
60-69 years, female
188.3
GTEX-1IKOH-0011-R2a-SM-CMKHO
60-69 years, female
187.5
GTEX-1LVA9-0011-R2a-SM-EZ6MJ
50-59 years, male
186.1
GTEX-1J8Q2-0011-R2b-SM-EAZ2X
60-69 years, male
177.1
GTEX-18464-0011-R2a-SM-731AL
50-59 years, male
165.6
GTEX-1IGQW-0011-R2b-SM-D4P26
60-69 years, male
165.0
GTEX-1GTWX-0011-R2b-SM-ADEH5
60-69 years, male
164.3
GTEX-17HG3-0011-R2a-SM-7MGVX
30-39 years, female
161.4
GTEX-ZV68-0011-R2a-SM-4YCDK
50-59 years, female
161.0
GTEX-YJ89-0011-R2b-SM-4RGLT
60-69 years, male
159.2
GTEX-X4XX-0011-R2A-SM-3P623
60-69 years, male
156.2
GTEX-1H3O1-0011-R2b-SM-CKZOT
60-69 years, male
153.1
GTEX-T2IS-0011-R2A-SM-32QPF
20-29 years, female
152.0
GTEX-T5JC-0011-R2A-SM-32PLZ
20-29 years, male
143.9
GTEX-ZAB4-0011-R2a-SM-4RGNP
40-49 years, male
143.5
GTEX-12WSH-0011-R2a-SM-5GU68
50-59 years, male
142.3
GTEX-1H1DG-0011-R2a-SM-ADEIQ
70-79 years, male
141.5
GTEX-11PRG-0011-R2a-SM-69LQ5
50-59 years, male
141.1
GTEX-1I1GS-0011-R2b-SM-CMKHG
60-69 years, male
140.5
GTEX-12WSA-0011-R2a-SM-57WDK
60-69 years, male
139.2
GTEX-11UD1-0011-R2b-SM-5BC6O
40-49 years, female
138.9
GTEX-1GN1U-0011-R2a-SM-CL53A
50-59 years, female
138.7
GTEX-1I1GV-0011-R2a-SM-ARZLF
60-69 years, male
137.6
GTEX-1HR98-0011-R2a-SM-ARL7A
60-69 years, male
137.4
GTEX-1F6IF-0011-R2b-SM-9QEHB
60-69 years, male
136.5
GTEX-13CF2-0011-R2a-SM-5L3DC
60-69 years, male
135.9
GTEX-1IY9M-0011-R2a-SM-D4P29
60-69 years, male
134.7
GTEX-UTHO-0011-R2A-SM-3GIKC
60-69 years, male
134.3
GTEX-T6MN-0011-R2A-SM-32QOW
50-59 years, male
133.0
GTEX-1E1VI-0011-R2a-SM-9QEGS
50-59 years, male
131.6
GTEX-132Q8-0011-R2b-SM-5EQ5Z
60-69 years, male
131.2
GTEX-12WSD-0011-R2a-SM-5LZWB
60-69 years, female
131.0
GTEX-Q2AG-0011-R2A-SM-2HMIT
40-49 years, female
127.1
GTEX-1B8SG-0011-R2b-SM-79OOT
50-59 years, male
126.8
GTEX-11ZTS-0011-R2b-SM-5BC75
60-69 years, female
126.2
GTEX-14JG1-0011-R2a-SM-5ZZVE
40-49 years, male
125.8
GTEX-1LSNL-0011-R2a-SM-EZ6MK
50-59 years, male
124.6
GTEX-1GN2E-0011-R2a-SM-9WG7D
60-69 years, male
122.5
GTEX-P44G-0011-R2A-SM-2XCD2
30-39 years, male
121.7
GTEX-1A8G7-0011-R2a-SM-7IGQI
60-69 years, male
120.5
GTEX-1RLM8-0011-R2a-SM-EZ6N4
50-59 years, male
116.5
GTEX-1F75B-0011-R2a-SM-ARL8I
50-59 years, male
116.2
GTEX-1IL2U-0011-R2a-SM-ARU6V
60-69 years, male
115.8
GTEX-YFC4-0011-R2a-SM-4V6DZ
40-49 years, female
115.5
GTEX-17EVP-0011-R2a-SM-7LG4W
40-49 years, male
115.3
GTEX-13O3O-0011-R2b-SM-5P9H1
60-69 years, female
115.1
GTEX-11WQC-0011-R2a-SM-DO927
60-69 years, male
112.5
GTEX-1B996-0011-R2a-SM-7IGON
60-69 years, male
112.2
GTEX-14PJO-0011-R2a-SM-5ZZVF
60-69 years, male
110.3
GTEX-1C6VR-0011-R2a-SM-7RHGZ
60-69 years, male
110.3
GTEX-1GN73-0011-R2a-SM-CJI2V
60-69 years, male
110.2
GTEX-1IKJJ-0011-R2b-SM-ARZLJ
60-69 years, male
109.9
GTEX-147GR-0011-R2b-SM-5S2RQ
60-69 years, male
109.3
GTEX-1I1CD-0011-R2a-SM-CM2T3
60-69 years, female
108.9
GTEX-N7MS-0011-R2a-SM-2HML6
60-69 years, male
107.2
GTEX-1MA7X-0011-R2b-SM-EZ6MT
60-69 years, male
107.0
GTEX-16Z82-0011-R2b-SM-79OK9
60-69 years, male
106.5
GTEX-N7MT-0011-R2a-SM-2I3GI
60-69 years, female
105.7
GTEX-S7SE-0011-R2A-SM-2XCDC
50-59 years, male
105.1
GTEX-14ASI-0011-R2b-SM-5YY9H
60-69 years, male
104.6
GTEX-1HSMO-0011-R2a-SM-CL553
60-69 years, male
103.9
GTEX-1JMQK-0011-R2a-SM-EYYXQ
60-69 years, male
103.4
GTEX-11EMC-0011-R2b-SM-DO114
60-69 years, female
103.0
GTEX-1F6I4-0011-R2a-SM-CL536
60-69 years, male
101.9
GTEX-13N2G-0011-R2a-SM-5MR4Q
60-69 years, male
101.3
GTEX-1EU9M-0011-R2b-SM-9QEH7
60-69 years, male
99.2
GTEX-13OW8-0011-R2a-SM-5L3G2
60-69 years, male
98.8
GTEX-1H23P-0011-R2a-SM-CKZP3
60-69 years, male
98.8
GTEX-145LS-0011-R2a-SM-5PNZI
60-69 years, female
97.2
GTEX-XLM4-0011-R2B-SM-4AT5Z
60-69 years, male
96.1
GTEX-NPJ7-0011-R2a-SM-2I3GF
60-69 years, female
95.8
GTEX-13SLX-0011-R2b-SM-5S2VP
50-59 years, female
95.1
GTEX-13X6K-0011-R2b-SM-5P9K3
60-69 years, female
94.7
GTEX-13FXS-0011-R2b-SM-5K7XX
50-59 years, male
93.1
GTEX-1F48J-0011-R2a-SM-CL535
50-59 years, female
92.8
GTEX-WHSE-0011-R2A-SM-3P5ZL
20-29 years, male
92.4
GTEX-15DCD-0011-R2b-SM-6LPIE
70-79 years, female
92.1
GTEX-1HFI6-0011-R2a-SM-CMKH5
40-49 years, male
92.1
GTEX-11GSO-0011-R2a-SM-57WDF
60-69 years, male
91.9
GTEX-13QJC-0011-R2b-SM-5PNUN
60-69 years, female
91.3
GTEX-13G51-0011-R2b-SM-5LZXS
60-69 years, male
91.2
GTEX-PWO3-0011-R2A-SM-2S1OX
60-69 years, female
89.3
GTEX-1H1ZS-0011-R2b-SM-CL54Q
70-79 years, male
89.3
GTEX-R55E-0011-R2A-SM-EYYV9
20-29 years, male
88.6
GTEX-15RJE-0011-R2b-SM-79OMP
40-49 years, male
87.9
GTEX-1445S-0011-R2b-SM-5PNUH
60-69 years, male
87.6
GTEX-1CB4G-0011-R2a-SM-9QEGQ
60-69 years, male
84.2
GTEX-12WSF-0011-R2a-SM-5DUVU
70-79 years, male
83.9
GTEX-1H3VE-0011-R2a-SM-CE6SA
40-49 years, male
83.5
GTEX-13RTJ-0011-R2a-SM-5PNW9
60-69 years, male
81.9
GTEX-1HT8W-0011-R2a-SM-CMKH9
30-39 years, male
81.3
GTEX-15DYW-0011-R2b-SM-7KUKY
60-69 years, female
80.9
GTEX-13X6I-0011-R2b-SM-5PNWQ
60-69 years, male
80.5
GTEX-11TUW-0011-R2b-SM-DO92T
60-69 years, male
80.2
GTEX-13SLW-0011-R2b-SM-5O9C6
70-79 years, male
79.3
GTEX-12ZZX-0011-R2a-SM-5EGLG
40-49 years, female
79.2
GTEX-1EKGG-0011-R2a-SM-CE6R8
60-69 years, male
79.0
GTEX-1LVAO-0011-R2a-SM-EYYX1
60-69 years, male
78.7
GTEX-RU72-0011-R2A-SM-2TF6O
50-59 years, female
78.0
GTEX-1GMR8-0011-R2a-SM-CE6RD
50-59 years, female
78.0
GTEX-14BIN-0011-R2a-SM-5S2RJ
50-59 years, female
77.9
GTEX-13O3Q-0011-R2b-SM-5KM3K
50-59 years, male
76.8
GTEX-1J1OQ-0011-R2b-SM-ARU88
40-49 years, female
76.7
GTEX-13OVJ-0011-R2b-SM-5L3GP
50-59 years, female
76.6
GTEX-1GZ2Q-0011-R2b-SM-9OSWO
40-49 years, male
76.2
GTEX-1B933-0011-R2b-SM-7IGNM
50-59 years, female
75.8
GTEX-XMD1-0011-R2B-SM-4AT5N
60-69 years, male
75.5
GTEX-QMR6-0011-R2A-SM-32PKV
50-59 years, male
73.6
GTEX-1399T-0011-R2b-SM-5DUXM
60-69 years, male
72.2
GTEX-14C5O-0011-R2a-SM-5ZZV2
60-69 years, male
71.1
GTEX-11GSP-0011-R2b-SM-9QEGE
60-69 years, female
69.9
GTEX-13OW6-0011-R2a-SM-5L3HG
50-59 years, male
67.0
GTEX-X585-0011-R2B-SM-46MVF
50-59 years, male
66.6
GTEX-1A3MX-0011-R2b-SM-7EWFL
60-69 years, male
66.1
GTEX-13PDP-0011-R2b-SM-5O9DH
60-69 years, male
64.8
GTEX-15CHQ-0011-R2b-SM-6AJAD
60-69 years, male
63.0
GTEX-15EO6-0011-R2a-SM-6M46R
50-59 years, male
61.4
GTEX-1EMGI-0011-R2b-SM-9OSVS
60-69 years, male
61.2
GTEX-14BIM-0011-R2b-SM-69LQ6
60-69 years, female
59.4
GTEX-1313W-0011-R2a-SM-5EGLF
50-59 years, female
58.1
GTEX-1B8L1-0011-R2a-SM-9OSVL
60-69 years, male
55.9
GTEX-OHPN-0011-R2A-SM-2I5FB
60-69 years, female
54.7
GTEX-14PN4-0011-R2a-SM-6EU2Y
50-59 years, male
53.5
GTEX-NL4W-0011-R2a-SM-2I5GV
50-59 years, male
53.4
GTEX-1HB9E-0011-R2b-SM-A96RW
50-59 years, male
49.7
GTEX-13NYS-0011-R2b-SM-5MR4G
60-69 years, male
46.0
GTEX-11DZ1-0011-R2a-SM-DNZZM
50-59 years, male
45.5
GTEX-Z93S-0011-R2a-SM-4RGNG
50-59 years, male
39.3
GTEX-QDT8-0011-R2A-SM-32PKQ
30-39 years, female
37.1
GTEX-1LH75-0011-R2b-SM-EYYWQ
50-59 years, female
36.6
GTEX-15ER7-0011-R2a-SM-6M46O
20-29 years, female
32.5
GTEX-NPJ8-0011-R2a-SM-2TC6M
40-49 years, male
32.3
Show allShow less
MIDBRAIN - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
3.2
Mouse sample
Sample description
nTPM
Midbrain nTPM: 3.2
Samples: 4
Max nTPM: 3.9
Min nTPM: 2.8
Sample A
Male
3.9
Sample B
Male
2.8
Sample C
Female
2.9
Sample D
Female
3.2
MIDBRAIN - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.