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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
9.7
nTPM
HPA Brain:
31.7
nTPM
GTEx:
9.7
nTPM
FANTOM5:
16.2
Scaled Tags Per Million
Pig:
10.9
nTPM
Mouse:
9.8
nTPM
Allen mouse:
0.2
Expression energy
MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
31.7
Sample id
Sample description
nTPM
Cuneiform nucleus nTPM: 23.4
1830
Male, age 51, unknown
26.3
2219
Male, age 76, both hemispheres
25.6
2828
Female, age 72, unknown
24.9
1833
Male, age 53, unknown
24.8
2019
Male, age 18, unknown
23.2
1827
Male, age 72, unknown
22.3
2666
Male, age 74, left hemisphere
22.3
1870
Female, age 42, unknown
22.2
2586
Male, age 75, left hemisphere
21.4
2411
Female, age 72, unknown
20.8
Dorsal raphe nucleus nTPM: 26.9
2016
Female, age 72, unknown
29.1
2047
Male, age 72, unknown
27.8
2298
Female, age 72, unknown
27.4
1828
Male, age 53, unknown
26.4
2750
Male, age 76, both hemispheres
23.9
Inferior colliculus nTPM: 25.9
2849
Male, age 72, unknown
29.7
1890
Male, age 53, unknown
27.2
1848
Female, age 42, unknown
24.2
2097
Female, age 72, unknown
22.6
Median raphe nucleus nTPM: 31.6
2220
Male, age 76, midline
31.6
Periaquaductal grey, anterior nTPM: 23.2
1795
Male, age 51, unknown
24.9
1947
Male, age 18, unknown
23.1
2502
Female, age 75, unknown
21.7
Periaquaductal grey, dorsal nTPM: 29.8
2850
Male, age 76, both hemispheres
36.2
1840
Male, age 53, unknown
30.3
1831
Male, age 72, unknown
28.0
2464
Female, age 72, unknown
24.7
Periaquaductal grey, lateral nTPM: 31.7
2272
Male, age 74, both hemispheres
34.9
2140
Male, age 76, both hemispheres
33.7
2053
Male, age 18, unknown
26.6
Pretectal area nTPM: 26.4
2273
Male, age 74, both hemispheres
34.3
2667
Female, age 75, unknown
31.9
2407
Male, age 75, both hemispheres
30.2
2224
Female, age 72, unknown
29.5
2825
Male, age 18, unknown
28.5
1944
Female, age 72, unknown
25.6
2316
Male, age 76, right hemisphere
24.8
1816
Male, age 51, unknown
22.5
1815
Male, age 53, unknown
22.2
1817
Female, age 42, unknown
21.5
2007
Male, age 72, unknown
19.4
Red nucleus nTPM: 23.9
1904
Male, age 53, unknown
26.1
1954
Female, age 42, unknown
25.8
2823
Male, age 76, right hemisphere
25.6
1865
Male, age 51, unknown
24.8
2725
Female, age 75, unknown
23.5
1821
Female, age 72, unknown
23.4
2503
Female, age 72, unknown
23.4
2785
Male, age 18, unknown
23.2
2769
Male, age 72, unknown
23.1
2227
Male, age 72, unknown
22.8
2584
Male, age 75, left hemisphere
22.5
2588
Male, age 74, left hemisphere
22.1
Substantia nigra nTPM: 26.5
2241
Male, age 72, unknown
34.3
2699
Male, age 18, unknown
31.6
1916
Female, age 42, unknown
29.8
2665
Male, age 74, both hemispheres
25.5
2409
Female, age 72, unknown
25.4
1851
Male, age 51, unknown
24.4
2590
Female, age 75, unknown
23.9
1941
Male, age 53, unknown
23.6
2583
Male, age 75, right hemisphere
23.5
1889
Female, age 72, unknown
23.4
Superior colliculus nTPM: 25.2
2664
Male, age 75, both hemispheres
28.2
2587
Male, age 74, left hemisphere
26.7
2087
Female, age 72, unknown
26.2
1995
Male, age 72, unknown
25.7
1796
Male, age 53, unknown
25.5
1839
Male, age 51, unknown
24.7
2668
Female, age 75, unknown
24.5
1895
Male, age 76, right hemisphere
24.4
2261
Male, age 18, unknown
23.4
1913
Female, age 42, unknown
22.5
Ventral tegmental area nTPM: 25.9
2218
Male, age 76, both hemispheres
29.3
2021
Male, age 53, unknown
26.7
1915
Female, age 42, unknown
26.4
1942
Male, age 51, unknown
25.9
2223
Female, age 72, unknown
24.2
2410
Female, age 72, unknown
22.7
MIDBRAIN - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
9.7
GTEx sample id
Sample description
nTPM
Brain - Substantia nigra Average nTPM: 9.7
Samples: 139
Max nTPM: 37.8
Min nTPM: 1.4
Std nTPM: 4.5
Median nTPM: 9.1
GTEX-1H1ZS-0011-R2b-SM-CL54Q
70-79 years, male
37.8
GTEX-1GZ2Q-0011-R2b-SM-9OSWO
40-49 years, male
22.3
GTEX-1IGQW-0011-R2b-SM-D4P26
60-69 years, male
22.0
GTEX-YJ89-0011-R2b-SM-4RGLT
60-69 years, male
19.0
GTEX-1HSMO-0011-R2a-SM-CL553
60-69 years, male
18.7
GTEX-1RLM8-0011-R2a-SM-EZ6N4
50-59 years, male
18.6
GTEX-1EKGG-0011-R2a-SM-CE6R8
60-69 years, male
18.4
GTEX-13OVJ-0011-R2b-SM-5L3GP
50-59 years, female
17.7
GTEX-1H3VE-0011-R2a-SM-CE6SA
40-49 years, male
16.4
GTEX-1H3O1-0011-R2b-SM-CKZOT
60-69 years, male
15.8
GTEX-13X6K-0011-R2b-SM-5P9K3
60-69 years, female
15.5
GTEX-ZV68-0011-R2a-SM-4YCDK
50-59 years, female
15.5
GTEX-13CF2-0011-R2a-SM-5L3DC
60-69 years, male
15.4
GTEX-XMD1-0011-R2B-SM-4AT5N
60-69 years, male
15.2
GTEX-12WSA-0011-R2a-SM-57WDK
60-69 years, male
15.1
GTEX-11GS4-0011-R2a-SM-DO942
60-69 years, male
14.7
GTEX-1C6VR-0011-R2a-SM-7RHGZ
60-69 years, male
14.5
GTEX-1GN2E-0011-R2a-SM-9WG7D
60-69 years, male
14.4
GTEX-1I1CD-0011-R2a-SM-CM2T3
60-69 years, female
14.4
GTEX-13OW8-0011-R2a-SM-5L3G2
60-69 years, male
13.9
GTEX-17HG3-0011-R2a-SM-7MGVX
30-39 years, female
13.7
GTEX-1IKOH-0011-R2a-SM-CMKHO
60-69 years, female
13.6
GTEX-1F6I4-0011-R2a-SM-CL536
60-69 years, male
13.3
GTEX-14PJO-0011-R2a-SM-5ZZVF
60-69 years, male
13.1
GTEX-1F75B-0011-R2a-SM-ARL8I
50-59 years, male
12.5
GTEX-1MA7X-0011-R2b-SM-EZ6MT
60-69 years, male
12.3
GTEX-12ZZX-0011-R2a-SM-5EGLG
40-49 years, female
12.2
GTEX-1A8G7-0011-R2a-SM-7IGQI
60-69 years, male
12.2
GTEX-13SLW-0011-R2b-SM-5O9C6
70-79 years, male
12.1
GTEX-NPJ8-0011-R2a-SM-2TC6M
40-49 years, male
12.1
GTEX-S7SE-0011-R2A-SM-2XCDC
50-59 years, male
12.1
GTEX-11EMC-0011-R2b-SM-DO114
60-69 years, female
12.0
GTEX-11TUW-0011-R2b-SM-DO92T
60-69 years, male
11.9
GTEX-15EO6-0011-R2a-SM-6M46R
50-59 years, male
11.8
GTEX-13G51-0011-R2b-SM-5LZXS
60-69 years, male
11.5
GTEX-1I1GS-0011-R2b-SM-CMKHG
60-69 years, male
11.5
GTEX-13O3Q-0011-R2b-SM-5KM3K
50-59 years, male
11.4
GTEX-1EU9M-0011-R2b-SM-9QEH7
60-69 years, male
11.4
GTEX-11GSO-0011-R2a-SM-57WDF
60-69 years, male
11.2
GTEX-YFC4-0011-R2a-SM-4V6DZ
40-49 years, female
11.2
GTEX-1GN1U-0011-R2a-SM-CL53A
50-59 years, female
11.2
GTEX-147GR-0011-R2b-SM-5S2RQ
60-69 years, male
11.1
GTEX-1CB4G-0011-R2a-SM-9QEGQ
60-69 years, male
11.0
GTEX-1IKJJ-0011-R2b-SM-ARZLJ
60-69 years, male
10.9
GTEX-11GSP-0011-R2b-SM-9QEGE
60-69 years, female
10.8
GTEX-1HR98-0011-R2a-SM-ARL7A
60-69 years, male
10.7
GTEX-13QJC-0011-R2b-SM-5PNUN
60-69 years, female
10.6
GTEX-14PN4-0011-R2a-SM-6EU2Y
50-59 years, male
10.6
GTEX-13O3O-0011-R2b-SM-5P9H1
60-69 years, female
10.5
GTEX-14ASI-0011-R2b-SM-5YY9H
60-69 years, male
10.5
GTEX-1LVA9-0011-R2a-SM-EZ6MJ
50-59 years, male
10.5
GTEX-1B8SG-0011-R2b-SM-79OOT
50-59 years, male
10.4
GTEX-PWO3-0011-R2A-SM-2S1OX
60-69 years, female
10.3
GTEX-1F6IF-0011-R2b-SM-9QEHB
60-69 years, male
10.3
GTEX-1GTWX-0011-R2b-SM-ADEH5
60-69 years, male
10.3
GTEX-1H23P-0011-R2a-SM-CKZP3
60-69 years, male
10.3
GTEX-1LVAO-0011-R2a-SM-EYYX1
60-69 years, male
10.3
GTEX-12WSH-0011-R2a-SM-5GU68
50-59 years, male
10.2
GTEX-T2IS-0011-R2A-SM-32QPF
20-29 years, female
10.2
GTEX-1E1VI-0011-R2a-SM-9QEGS
50-59 years, male
10.2
GTEX-1B933-0011-R2b-SM-7IGNM
50-59 years, female
9.9
GTEX-1JMQK-0011-R2a-SM-EYYXQ
60-69 years, male
9.9
GTEX-ZDXO-0011-R2b-SM-4WKFG
60-69 years, male
9.8
GTEX-R55E-0011-R2A-SM-EYYV9
20-29 years, male
9.8
GTEX-1LSNL-0011-R2a-SM-EZ6MK
50-59 years, male
9.7
GTEX-QMR6-0011-R2A-SM-32PKV
50-59 years, male
9.4
GTEX-132Q8-0011-R2b-SM-5EQ5Z
60-69 years, male
9.3
GTEX-1GMR8-0011-R2a-SM-CE6RD
50-59 years, female
9.3
GTEX-16Z82-0011-R2b-SM-79OK9
60-69 years, male
9.2
GTEX-13PDP-0011-R2b-SM-5O9DH
60-69 years, male
9.1
GTEX-1F48J-0011-R2a-SM-CL535
50-59 years, female
9.1
GTEX-11ZTS-0011-R2b-SM-5BC75
60-69 years, female
8.8
GTEX-1399T-0011-R2b-SM-5DUXM
60-69 years, male
8.8
GTEX-1B8L1-0011-R2a-SM-9OSVL
60-69 years, male
8.8
GTEX-13RTJ-0011-R2a-SM-5PNW9
60-69 years, male
8.6
GTEX-14JG1-0011-R2a-SM-5ZZVE
40-49 years, male
8.6
GTEX-17EVP-0011-R2a-SM-7LG4W
40-49 years, male
8.5
GTEX-14BIN-0011-R2a-SM-5S2RJ
50-59 years, female
8.4
GTEX-13N2G-0011-R2a-SM-5MR4Q
60-69 years, male
8.3
GTEX-1A3MX-0011-R2b-SM-7EWFL
60-69 years, male
8.1
GTEX-12WSD-0011-R2a-SM-5LZWB
60-69 years, female
8.0
GTEX-NL4W-0011-R2a-SM-2I5GV
50-59 years, male
8.0
GTEX-11PRG-0011-R2a-SM-69LQ5
50-59 years, male
7.9
GTEX-15DCD-0011-R2b-SM-6LPIE
70-79 years, female
7.9
GTEX-1HB9E-0011-R2b-SM-A96RW
50-59 years, male
7.8
GTEX-1313W-0011-R2a-SM-5EGLF
50-59 years, female
7.7
GTEX-1445S-0011-R2b-SM-5PNUH
60-69 years, male
7.7
GTEX-QDT8-0011-R2A-SM-32PKQ
30-39 years, female
7.6
GTEX-1B996-0011-R2a-SM-7IGON
60-69 years, male
7.4
GTEX-1J8Q2-0011-R2b-SM-EAZ2X
60-69 years, male
7.4
GTEX-11UD1-0011-R2b-SM-5BC6O
40-49 years, female
7.3
GTEX-14BIM-0011-R2b-SM-69LQ6
60-69 years, female
7.3
GTEX-15ER7-0011-R2a-SM-6M46O
20-29 years, female
7.3
GTEX-OHPN-0011-R2A-SM-2I5FB
60-69 years, female
7.3
GTEX-15DYW-0011-R2b-SM-7KUKY
60-69 years, female
7.1
GTEX-OXRO-0011-R2A-SM-3NB1W
60-69 years, female
7.1
GTEX-13SLX-0011-R2b-SM-5S2VP
50-59 years, female
6.9
GTEX-1GN73-0011-R2a-SM-CJI2V
60-69 years, male
6.9
GTEX-1IY9M-0011-R2a-SM-D4P29
60-69 years, male
6.7
GTEX-13FXS-0011-R2b-SM-5K7XX
50-59 years, male
6.6
GTEX-13X6I-0011-R2b-SM-5PNWQ
60-69 years, male
6.6
GTEX-T5JC-0011-R2A-SM-32PLZ
20-29 years, male
6.6
GTEX-XLM4-0011-R2B-SM-4AT5Z
60-69 years, male
6.6
GTEX-13OW6-0011-R2a-SM-5L3HG
50-59 years, male
6.5
GTEX-15RJE-0011-R2b-SM-79OMP
40-49 years, male
6.5
GTEX-12WSF-0011-R2a-SM-5DUVU
70-79 years, male
6.4
GTEX-145LS-0011-R2a-SM-5PNZI
60-69 years, female
6.4
GTEX-Z93S-0011-R2a-SM-4RGNG
50-59 years, male
6.4
GTEX-11WQC-0011-R2a-SM-DO927
60-69 years, male
6.4
GTEX-1HT8W-0011-R2a-SM-CMKH9
30-39 years, male
6.4
GTEX-1IL2U-0011-R2a-SM-ARU6V
60-69 years, male
6.4
GTEX-NPJ7-0011-R2a-SM-2I3GF
60-69 years, female
6.2
GTEX-1H1DG-0011-R2a-SM-ADEIQ
70-79 years, male
6.2
GTEX-1I1GV-0011-R2a-SM-ARZLF
60-69 years, male
6.1
GTEX-1J1OQ-0011-R2b-SM-ARU88
40-49 years, female
6.1
GTEX-1LH75-0011-R2b-SM-EYYWQ
50-59 years, female
6.1
GTEX-ZAB4-0011-R2a-SM-4RGNP
40-49 years, male
6.0
GTEX-139TS-0011-R2b-SM-5J1MX
60-69 years, male
5.8
GTEX-P44G-0011-R2A-SM-2XCD2
30-39 years, male
5.5
GTEX-1EMGI-0011-R2b-SM-9OSVS
60-69 years, male
5.4
GTEX-131XH-0011-R2b-SM-5DUVY
50-59 years, male
5.3
GTEX-UTHO-0011-R2A-SM-3GIKC
60-69 years, male
5.3
GTEX-ZE9C-0011-R2a-SM-4WKGH
60-69 years, male
5.3
GTEX-18464-0011-R2a-SM-731AL
50-59 years, male
5.2
GTEX-WHSE-0011-R2A-SM-3P5ZL
20-29 years, male
5.2
GTEX-14C5O-0011-R2a-SM-5ZZV2
60-69 years, male
5.1
GTEX-15CHQ-0011-R2b-SM-6AJAD
60-69 years, male
5.1
GTEX-13NYS-0011-R2b-SM-5MR4G
60-69 years, male
5.0
GTEX-11DZ1-0011-R2a-SM-DNZZM
50-59 years, male
5.0
GTEX-1HFI6-0011-R2a-SM-CMKH5
40-49 years, male
5.0
GTEX-N7MS-0011-R2a-SM-2HML6
60-69 years, male
4.9
GTEX-Q2AG-0011-R2A-SM-2HMIT
40-49 years, female
4.9
GTEX-T6MN-0011-R2A-SM-32QOW
50-59 years, male
4.9
GTEX-1LB8K-0011-R2a-SM-EZ6MQ
50-59 years, male
4.9
GTEX-N7MT-0011-R2a-SM-2I3GI
60-69 years, female
4.4
GTEX-X4XX-0011-R2A-SM-3P623
60-69 years, male
4.2
GTEX-RU72-0011-R2A-SM-2TF6O
50-59 years, female
4.1
GTEX-X585-0011-R2B-SM-46MVF
50-59 years, male
3.1
GTEX-13NYB-0011-R2a-SM-5MR3C
40-49 years, male
1.4
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MIDBRAIN - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
9.8
Mouse sample
Sample description
nTPM
Midbrain nTPM: 9.8
Samples: 4
Max nTPM: 10.4
Min nTPM: 9.2
Sample A
Male
10.1
Sample B
Male
10.4
Sample C
Female
9.6
Sample D
Female
9.2
MIDBRAIN - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.