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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
27.2
nTPM
HPA Brain:
222.4
nTPM
GTEx:
27.2
nTPM
FANTOM5:
516.0
Scaled Tags Per Million
Pig:
32.0
nTPM
Mouse:
2.3
nTPM
Allen mouse:
0.1
Expression energy
MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
222.4
Sample id
Sample description
nTPM
Cuneiform nucleus nTPM: 64.4
1870
Female, age 42, unknown
108.3
2828
Female, age 72, unknown
105.9
1830
Male, age 51, unknown
72.6
1827
Male, age 72, unknown
63.1
2411
Female, age 72, unknown
58.5
2586
Male, age 75, left hemisphere
58.4
2666
Male, age 74, left hemisphere
54.5
1833
Male, age 53, unknown
53.5
2019
Male, age 18, unknown
42.8
2219
Male, age 76, both hemispheres
26.5
Dorsal raphe nucleus nTPM: 105.9
2016
Female, age 72, unknown
139.1
1828
Male, age 53, unknown
115.2
2047
Male, age 72, unknown
109.0
2298
Female, age 72, unknown
107.0
2750
Male, age 76, both hemispheres
59.4
Inferior colliculus nTPM: 59.8
2097
Female, age 72, unknown
71.7
2849
Male, age 72, unknown
62.4
1848
Female, age 42, unknown
60.1
1890
Male, age 53, unknown
45.1
Median raphe nucleus nTPM: 108.9
2220
Male, age 76, midline
108.9
Periaquaductal grey, anterior nTPM: 90.6
1795
Male, age 51, unknown
116.5
2502
Female, age 75, unknown
89.3
1947
Male, age 18, unknown
65.9
Periaquaductal grey, dorsal nTPM: 132.4
2850
Male, age 76, both hemispheres
210.3
1831
Male, age 72, unknown
145.9
1840
Male, age 53, unknown
103.3
2464
Female, age 72, unknown
69.8
Periaquaductal grey, lateral nTPM: 222.4
2053
Male, age 18, unknown
285.4
2140
Male, age 76, both hemispheres
202.0
2272
Male, age 74, both hemispheres
179.7
Pretectal area nTPM: 93.5
2273
Male, age 74, both hemispheres
236.2
2224
Female, age 72, unknown
126.1
2825
Male, age 18, unknown
124.6
2407
Male, age 75, both hemispheres
123.8
2316
Male, age 76, right hemisphere
103.7
2667
Female, age 75, unknown
84.9
1815
Male, age 53, unknown
69.8
1944
Female, age 72, unknown
69.8
1817
Female, age 42, unknown
40.3
2007
Male, age 72, unknown
25.6
1816
Male, age 51, unknown
24.3
Red nucleus nTPM: 58.8
2725
Female, age 75, unknown
104.9
1865
Male, age 51, unknown
75.9
1821
Female, age 72, unknown
69.0
2769
Male, age 72, unknown
66.0
2227
Male, age 72, unknown
60.8
2503
Female, age 72, unknown
60.2
2823
Male, age 76, right hemisphere
55.6
2584
Male, age 75, left hemisphere
51.6
1954
Female, age 42, unknown
50.2
2785
Male, age 18, unknown
44.4
2588
Male, age 74, left hemisphere
34.7
1904
Male, age 53, unknown
32.7
Substantia nigra nTPM: 66.0
1941
Male, age 53, unknown
108.0
2699
Male, age 18, unknown
104.1
2409
Female, age 72, unknown
81.6
1851
Male, age 51, unknown
72.9
2590
Female, age 75, unknown
57.6
1889
Female, age 72, unknown
53.9
1916
Female, age 42, unknown
51.4
2241
Male, age 72, unknown
50.8
2583
Male, age 75, right hemisphere
49.2
2665
Male, age 74, both hemispheres
30.6
Superior colliculus nTPM: 100.4
1913
Female, age 42, unknown
225.1
1995
Male, age 72, unknown
171.0
2587
Male, age 74, left hemisphere
126.7
2664
Male, age 75, both hemispheres
103.3
1796
Male, age 53, unknown
94.6
1839
Male, age 51, unknown
78.6
2087
Female, age 72, unknown
66.9
2261
Male, age 18, unknown
56.6
2668
Female, age 75, unknown
44.1
1895
Male, age 76, right hemisphere
37.3
Ventral tegmental area nTPM: 109.1
2021
Male, age 53, unknown
154.7
1942
Male, age 51, unknown
138.5
2223
Female, age 72, unknown
125.9
1915
Female, age 42, unknown
99.7
2218
Male, age 76, both hemispheres
79.9
2410
Female, age 72, unknown
56.0
MIDBRAIN - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
27.2
GTEx sample id
Sample description
nTPM
Brain - Substantia nigra Average nTPM: 27.2
Samples: 139
Max nTPM: 325.4
Min nTPM: 2.7
Std nTPM: 31.0
Median nTPM: 20.7
GTEX-13NYS-0011-R2b-SM-5MR4G
60-69 years, male
325.4
GTEX-1LVAO-0011-R2a-SM-EYYX1
60-69 years, male
113.3
GTEX-1B996-0011-R2a-SM-7IGON
60-69 years, male
93.9
GTEX-1H3VE-0011-R2a-SM-CE6SA
40-49 years, male
76.7
GTEX-132Q8-0011-R2b-SM-5EQ5Z
60-69 years, male
76.6
GTEX-14BIM-0011-R2b-SM-69LQ6
60-69 years, female
74.7
GTEX-14C5O-0011-R2a-SM-5ZZV2
60-69 years, male
74.7
GTEX-NPJ8-0011-R2a-SM-2TC6M
40-49 years, male
70.9
GTEX-1F48J-0011-R2a-SM-CL535
50-59 years, female
62.2
GTEX-1JMQK-0011-R2a-SM-EYYXQ
60-69 years, male
62.0
GTEX-11TUW-0011-R2b-SM-DO92T
60-69 years, male
59.2
GTEX-NL4W-0011-R2a-SM-2I5GV
50-59 years, male
58.4
GTEX-13OVJ-0011-R2b-SM-5L3GP
50-59 years, female
53.9
GTEX-1B8SG-0011-R2b-SM-79OOT
50-59 years, male
49.0
GTEX-1RLM8-0011-R2a-SM-EZ6N4
50-59 years, male
47.3
GTEX-1A3MX-0011-R2b-SM-7EWFL
60-69 years, male
45.8
GTEX-12WSH-0011-R2a-SM-5GU68
50-59 years, male
39.7
GTEX-N7MT-0011-R2a-SM-2I3GI
60-69 years, female
38.2
GTEX-OHPN-0011-R2A-SM-2I5FB
60-69 years, female
38.2
GTEX-1J1OQ-0011-R2b-SM-ARU88
40-49 years, female
37.7
GTEX-11ZTS-0011-R2b-SM-5BC75
60-69 years, female
37.6
GTEX-13X6K-0011-R2b-SM-5P9K3
60-69 years, female
37.1
GTEX-PWO3-0011-R2A-SM-2S1OX
60-69 years, female
37.1
GTEX-XMD1-0011-R2B-SM-4AT5N
60-69 years, male
36.0
GTEX-13PDP-0011-R2b-SM-5O9DH
60-69 years, male
35.5
GTEX-1HSMO-0011-R2a-SM-CL553
60-69 years, male
34.7
GTEX-1H1DG-0011-R2a-SM-ADEIQ
70-79 years, male
34.4
GTEX-12WSF-0011-R2a-SM-5DUVU
70-79 years, male
34.0
GTEX-13NYB-0011-R2a-SM-5MR3C
40-49 years, male
33.7
GTEX-1IGQW-0011-R2b-SM-D4P26
60-69 years, male
33.4
GTEX-1EU9M-0011-R2b-SM-9QEH7
60-69 years, male
31.7
GTEX-1J8Q2-0011-R2b-SM-EAZ2X
60-69 years, male
30.6
GTEX-11GS4-0011-R2a-SM-DO942
60-69 years, male
29.2
GTEX-ZV68-0011-R2a-SM-4YCDK
50-59 years, female
28.5
GTEX-1LVA9-0011-R2a-SM-EZ6MJ
50-59 years, male
28.5
GTEX-X585-0011-R2B-SM-46MVF
50-59 years, male
28.3
GTEX-YFC4-0011-R2a-SM-4V6DZ
40-49 years, female
28.3
GTEX-16Z82-0011-R2b-SM-79OK9
60-69 years, male
28.2
GTEX-P44G-0011-R2A-SM-2XCD2
30-39 years, male
28.1
GTEX-WHSE-0011-R2A-SM-3P5ZL
20-29 years, male
27.6
GTEX-15RJE-0011-R2b-SM-79OMP
40-49 years, male
26.8
GTEX-1LSNL-0011-R2a-SM-EZ6MK
50-59 years, male
26.8
GTEX-1HR98-0011-R2a-SM-ARL7A
60-69 years, male
26.6
GTEX-15EO6-0011-R2a-SM-6M46R
50-59 years, male
26.4
GTEX-RU72-0011-R2A-SM-2TF6O
50-59 years, female
26.1
GTEX-OXRO-0011-R2A-SM-3NB1W
60-69 years, female
26.0
GTEX-13RTJ-0011-R2a-SM-5PNW9
60-69 years, male
25.5
GTEX-QMR6-0011-R2A-SM-32PKV
50-59 years, male
25.5
GTEX-1I1GS-0011-R2b-SM-CMKHG
60-69 years, male
25.5
GTEX-1F75B-0011-R2a-SM-ARL8I
50-59 years, male
25.3
GTEX-1HB9E-0011-R2b-SM-A96RW
50-59 years, male
25.3
GTEX-1LH75-0011-R2b-SM-EYYWQ
50-59 years, female
25.3
GTEX-11GSP-0011-R2b-SM-9QEGE
60-69 years, female
24.9
GTEX-11EMC-0011-R2b-SM-DO114
60-69 years, female
24.5
GTEX-NPJ7-0011-R2a-SM-2I3GF
60-69 years, female
24.0
GTEX-UTHO-0011-R2A-SM-3GIKC
60-69 years, male
23.8
GTEX-1GN1U-0011-R2a-SM-CL53A
50-59 years, female
23.8
GTEX-Q2AG-0011-R2A-SM-2HMIT
40-49 years, female
23.1
GTEX-1H1ZS-0011-R2b-SM-CL54Q
70-79 years, male
23.0
GTEX-1CB4G-0011-R2a-SM-9QEGQ
60-69 years, male
22.9
GTEX-1A8G7-0011-R2a-SM-7IGQI
60-69 years, male
22.5
GTEX-13QJC-0011-R2b-SM-5PNUN
60-69 years, female
22.3
GTEX-1C6VR-0011-R2a-SM-7RHGZ
60-69 years, male
22.2
GTEX-1GTWX-0011-R2b-SM-ADEH5
60-69 years, male
22.2
GTEX-1H3O1-0011-R2b-SM-CKZOT
60-69 years, male
21.9
GTEX-12WSA-0011-R2a-SM-57WDK
60-69 years, male
21.4
GTEX-13SLW-0011-R2b-SM-5O9C6
70-79 years, male
21.4
GTEX-13X6I-0011-R2b-SM-5PNWQ
60-69 years, male
21.0
GTEX-15DYW-0011-R2b-SM-7KUKY
60-69 years, female
21.0
GTEX-13N2G-0011-R2a-SM-5MR4Q
60-69 years, male
20.7
GTEX-14PN4-0011-R2a-SM-6EU2Y
50-59 years, male
20.7
GTEX-ZE9C-0011-R2a-SM-4WKGH
60-69 years, male
20.5
GTEX-11UD1-0011-R2b-SM-5BC6O
40-49 years, female
20.4
GTEX-ZAB4-0011-R2a-SM-4RGNP
40-49 years, male
20.3
GTEX-T6MN-0011-R2A-SM-32QOW
50-59 years, male
19.7
GTEX-S7SE-0011-R2A-SM-2XCDC
50-59 years, male
19.6
GTEX-11GSO-0011-R2a-SM-57WDF
60-69 years, male
19.4
GTEX-1F6IF-0011-R2b-SM-9QEHB
60-69 years, male
19.1
GTEX-1EKGG-0011-R2a-SM-CE6R8
60-69 years, male
18.8
GTEX-XLM4-0011-R2B-SM-4AT5Z
60-69 years, male
18.6
GTEX-13FXS-0011-R2b-SM-5K7XX
50-59 years, male
18.0
GTEX-17EVP-0011-R2a-SM-7LG4W
40-49 years, male
18.0
GTEX-1IKJJ-0011-R2b-SM-ARZLJ
60-69 years, male
18.0
GTEX-YJ89-0011-R2b-SM-4RGLT
60-69 years, male
17.9
GTEX-13OW8-0011-R2a-SM-5L3G2
60-69 years, male
17.6
GTEX-1445S-0011-R2b-SM-5PNUH
60-69 years, male
17.2
GTEX-15DCD-0011-R2b-SM-6LPIE
70-79 years, female
17.2
GTEX-1B933-0011-R2b-SM-7IGNM
50-59 years, female
16.4
GTEX-1HFI6-0011-R2a-SM-CMKH5
40-49 years, male
16.1
GTEX-1IKOH-0011-R2a-SM-CMKHO
60-69 years, female
16.1
GTEX-147GR-0011-R2b-SM-5S2RQ
60-69 years, male
16.0
GTEX-14BIN-0011-R2a-SM-5S2RJ
50-59 years, female
16.0
GTEX-13O3O-0011-R2b-SM-5P9H1
60-69 years, female
15.6
GTEX-1MA7X-0011-R2b-SM-EZ6MT
60-69 years, male
15.4
GTEX-13G51-0011-R2b-SM-5LZXS
60-69 years, male
15.2
GTEX-15CHQ-0011-R2b-SM-6AJAD
60-69 years, male
14.8
GTEX-1GMR8-0011-R2a-SM-CE6RD
50-59 years, female
14.7
GTEX-QDT8-0011-R2A-SM-32PKQ
30-39 years, female
14.2
GTEX-1399T-0011-R2b-SM-5DUXM
60-69 years, male
14.1
GTEX-11DZ1-0011-R2a-SM-DNZZM
50-59 years, male
14.0
GTEX-14JG1-0011-R2a-SM-5ZZVE
40-49 years, male
13.9
GTEX-1I1GV-0011-R2a-SM-ARZLF
60-69 years, male
13.7
GTEX-X4XX-0011-R2A-SM-3P623
60-69 years, male
13.5
GTEX-13OW6-0011-R2a-SM-5L3HG
50-59 years, male
13.4
GTEX-1EMGI-0011-R2b-SM-9OSVS
60-69 years, male
12.9
GTEX-1IL2U-0011-R2a-SM-ARU6V
60-69 years, male
12.8
GTEX-11WQC-0011-R2a-SM-DO927
60-69 years, male
12.5
GTEX-13CF2-0011-R2a-SM-5L3DC
60-69 years, male
12.4
GTEX-17HG3-0011-R2a-SM-7MGVX
30-39 years, female
12.3
GTEX-14ASI-0011-R2b-SM-5YY9H
60-69 years, male
11.9
GTEX-1GZ2Q-0011-R2b-SM-9OSWO
40-49 years, male
11.9
GTEX-12ZZX-0011-R2a-SM-5EGLG
40-49 years, female
11.7
GTEX-1E1VI-0011-R2a-SM-9QEGS
50-59 years, male
11.7
GTEX-1H23P-0011-R2a-SM-CKZP3
60-69 years, male
11.7
GTEX-1GN2E-0011-R2a-SM-9WG7D
60-69 years, male
11.6
GTEX-N7MS-0011-R2a-SM-2HML6
60-69 years, male
11.4
GTEX-1F6I4-0011-R2a-SM-CL536
60-69 years, male
11.3
GTEX-1313W-0011-R2a-SM-5EGLF
50-59 years, female
10.9
GTEX-1GN73-0011-R2a-SM-CJI2V
60-69 years, male
10.9
GTEX-145LS-0011-R2a-SM-5PNZI
60-69 years, female
10.6
GTEX-1LB8K-0011-R2a-SM-EZ6MQ
50-59 years, male
10.5
GTEX-13SLX-0011-R2b-SM-5S2VP
50-59 years, female
10.4
GTEX-ZDXO-0011-R2b-SM-4WKFG
60-69 years, male
10.3
GTEX-1I1CD-0011-R2a-SM-CM2T3
60-69 years, female
10.3
GTEX-1IY9M-0011-R2a-SM-D4P29
60-69 years, male
10.3
GTEX-131XH-0011-R2b-SM-5DUVY
50-59 years, male
10.0
GTEX-11PRG-0011-R2a-SM-69LQ5
50-59 years, male
9.9
GTEX-T2IS-0011-R2A-SM-32QPF
20-29 years, female
9.8
GTEX-139TS-0011-R2b-SM-5J1MX
60-69 years, male
9.3
GTEX-15ER7-0011-R2a-SM-6M46O
20-29 years, female
9.1
GTEX-18464-0011-R2a-SM-731AL
50-59 years, male
9.1
GTEX-12WSD-0011-R2a-SM-5LZWB
60-69 years, female
8.8
GTEX-13O3Q-0011-R2b-SM-5KM3K
50-59 years, male
8.7
GTEX-1HT8W-0011-R2a-SM-CMKH9
30-39 years, male
8.7
GTEX-T5JC-0011-R2A-SM-32PLZ
20-29 years, male
8.1
GTEX-1B8L1-0011-R2a-SM-9OSVL
60-69 years, male
7.4
GTEX-14PJO-0011-R2a-SM-5ZZVF
60-69 years, male
6.9
GTEX-R55E-0011-R2A-SM-EYYV9
20-29 years, male
6.7
GTEX-Z93S-0011-R2a-SM-4RGNG
50-59 years, male
2.7
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MIDBRAIN - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
2.3
Mouse sample
Sample description
nTPM
Midbrain nTPM: 2.3
Samples: 4
Max nTPM: 2.6
Min nTPM: 1.8
Sample A
Male
2.6
Sample B
Male
2.4
Sample C
Female
2.3
Sample D
Female
1.8
MIDBRAIN - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.