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TISSUE PRIMARY DATA SMALL INTESTINE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
NASOPHARYNX ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Small intestine
Tissue proteome
Intestine
Tissue methods
SMALL INTESTINE - Expression summary
Protein expression
Small intestinei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Endocrine cells: Not detected
Enterocytes: Not detected
Enterocytes - Microvilli: Not detected
Goblet cells: Not detected
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:636.4 nTPM
HPA:251.9 nTPM
GTEx:636.4 nTPM
FANTOM5:441.0 Scaled Tags Per Million
SMALL INTESTINE - SINGLE CELL RNA EXPRESSION
Explore single cell type data

SMALL INTESTINE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells. Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Ascending and descending describe two types of gradient, based on difference in staining intensity between enterocytes in crypts and apical enterocytes.

Ascending - the staining intensity is stronger in apical enterocytes (towards the lumen) compared to enterocytes in the crypts (gland based)

Descending - the staining is weaker in apical enterocytes compared to enterocytes in crypts

Antibody HPA001762Antibody CAB000080Antibody CAB058687
Endocrine cells -Not detected-
Enterocytes -Not detected-
Enterocytes - Microvilli -Not detected-
Glandular cells Not detected-Not detected
Goblet cells -Not detected-






SMALL INTESTINE - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.

Average nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

251.9
overview
Male, age 65
Small intestine sample 232
nTPM: 200.5
Cell types%
Glandular cells:
55

Smooth muscle cells:
5

Other cell types:
40

overview
Male, age 39
Small intestine sample 233
nTPM: 232.3
Cell types%
Glandular cells:
40

Smooth muscle cells:
5

Other cell types:
55

overview
Male, age 68
Small intestine sample 234
nTPM: 297.4
Cell types%
Glandular cells:
30

Smooth muscle cells:
15

Other cell types:
55

N/A
Male, age 85
Small intestine sample 235
nTPM: 277.3

SMALL INTESTINE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

636.4
GTEx sample id Sample description nTPM
Small Intestine - Terminal Ileum
Average nTPM: 636.4
Samples: 207

Max nTPM: 2227.0
Min nTPM: 134.9
Std nTPM: 407.5
Median nTPM: 545.5
GTEX-1R9K4-2326-SM-E6CRB 60-69 years, male 2227.0
GTEX-1BAJH-2526-SM-7IGOT 70-79 years, male 2203.1
GTEX-13OVI-1926-SM-5IJCG 60-69 years, female 2149.4
GTEX-1192X-2526-SM-59868 50-59 years, male 2005.1
GTEX-1JJE9-2226-SM-CXZJM 70-79 years, male 1911.6
GTEX-15EU6-1826-SM-7PC1W 50-59 years, male 1906.1
GTEX-1JMQK-2426-SM-CXZJU 60-69 years, male 1882.9
GTEX-13NYB-1826-SM-5J1N3 40-49 years, male 1749.7
GTEX-W5X1-1926-SM-GOQYX 40-49 years, female 1674.9
GTEX-1PFEY-1326-SM-HK791 30-39 years, male 1663.4
GTEX-Y5V5-1826-SM-4VDS5 60-69 years, female 1499.4
GTEX-Y111-2226-SM-4SOJB 50-59 years, male 1447.7
GTEX-1B8KZ-1126-SM-7IGLX 50-59 years, male 1397.8
GTEX-1R7EV-1226-SM-DTX82 40-49 years, male 1323.6
GTEX-1EMGI-2826-SM-7IGMR 60-69 years, male 1311.2
GTEX-1RQED-2826-SM-HLJQK 60-69 years, male 1210.4
GTEX-1LH75-1926-SM-DIPGD 50-59 years, female 1174.6
GTEX-117YX-0326-SM-5GICL 50-59 years, male 1150.0
GTEX-XMK1-1826-SM-4B66F 40-49 years, male 1146.8
GTEX-WFON-1526-SM-4LVMP 40-49 years, male 1118.3
GTEX-1NSGN-2126-SM-DPRYN 50-59 years, male 1097.4
GTEX-1R9K5-2026-SM-E6CPS 50-59 years, male 1092.7
GTEX-14C39-1826-SM-5ZZW4 40-49 years, male 1087.4
GTEX-1C64O-2526-SM-79ONO 60-69 years, male 1072.3
GTEX-ZC5H-2326-SM-4WAYT 40-49 years, female 1060.4
GTEX-1QCLZ-2126-SM-EWRNC 60-69 years, female 1033.2
GTEX-148VJ-2226-SM-5NQ9M 70-79 years, male 1030.3
GTEX-111CU-1326-SM-5NQ8L 50-59 years, male 1023.9
GTEX-1MUQO-2426-SM-EAZ5A 60-69 years, male 1018.4
GTEX-1R9PM-1626-SM-DPRY9 20-29 years, male 1017.5
GTEX-1R9JW-1926-SM-EVR4J 30-39 years, female 999.7
GTEX-XPT6-1026-SM-GOQYN 20-29 years, male 980.9
GTEX-WFG8-1626-SM-4LVMB 20-29 years, male 973.0
GTEX-12WSK-1526-SM-5CVNO 40-49 years, female 939.8
GTEX-1I1GT-1826-SM-ARZLW 60-69 years, female 926.2
GTEX-1MGNQ-2326-SM-EV7BG 40-49 years, male 923.0
GTEX-1OKEX-1126-SM-DTXEB 60-69 years, male 907.8
GTEX-1F75I-2526-SM-9WPOZ 40-49 years, male 894.2
GTEX-1RAZR-1826-SM-E6CRE 40-49 years, male 883.9
GTEX-YB5K-1126-SM-H6Q6O 40-49 years, female 869.9
GTEX-1M5QR-2226-SM-HLJRV 40-49 years, male 868.7
GTEX-1QP28-1726-SM-E6CRK 50-59 years, female 856.1
GTEX-WYJK-1526-SM-4ONCW 50-59 years, male 856.0
GTEX-17KNJ-1626-SM-718AL 50-59 years, male 854.9
GTEX-Y3I4-1326-SM-4TT8Z 50-59 years, male 838.9
GTEX-13QBU-1926-SM-5IJEW 40-49 years, female 834.6
GTEX-ZF2S-1726-SM-57WFT 50-59 years, female 821.3
GTEX-VUSG-1726-SM-4KKZL 50-59 years, male 814.0
GTEX-1RAZA-1826-SM-DTXA2 20-29 years, male 809.6
GTEX-ZQUD-0926-SM-57WE3 30-39 years, male 803.6
GTEX-Y3IK-1726-SM-4YCCR 50-59 years, female 797.2
GTEX-1497J-1926-SM-5TDCC 60-69 years, male 790.7
GTEX-14PJ3-1326-SM-664O7 50-59 years, male 779.6
GTEX-13O21-1026-SM-5IJDU 50-59 years, male 777.4
GTEX-1GMR3-2726-SM-7MKFB 40-49 years, male 774.7
GTEX-145ME-0926-SM-5O9AR 40-49 years, female 761.3
GTEX-Y5LM-1626-SM-4VDTB 40-49 years, female 750.2
GTEX-1S82Z-1826-SM-E9TIK 30-39 years, female 744.5
GTEX-ZPU1-1826-SM-GNTB3 40-49 years, male 744.5
GTEX-1S5ZA-1326-SM-EV7BB 20-29 years, male 742.4
GTEX-18QFQ-1626-SM-72D7H 30-39 years, male 740.7
GTEX-13111-1426-SM-5DUW3 50-59 years, male 740.2
GTEX-1QW4Y-1226-SM-EWRMY 30-39 years, male 739.7
GTEX-1H1DE-1426-SM-9JGHV 20-29 years, male 737.8
GTEX-ZPIC-2326-SM-57WDW 40-49 years, female 726.4
GTEX-ZTPG-2626-SM-57WFX 20-29 years, female 713.9
GTEX-ZAB5-1526-SM-5HL9P 50-59 years, male 707.1
GTEX-ZVT2-2126-SM-5NQ93 50-59 years, female 690.5
GTEX-16A39-1426-SM-6LLI6 30-39 years, female 685.2
GTEX-WEY5-1526-SM-4LMJF 40-49 years, female 680.6
GTEX-178AV-1226-SM-GOR11 40-49 years, male 677.4
GTEX-1R7EU-1326-SM-E6CQ6 60-69 years, male 676.7
GTEX-18A66-2526-SM-7KFTZ 60-69 years, male 676.4
GTEX-1OJC3-1626-SM-E9U65 20-29 years, male 674.3
GTEX-183FY-1626-SM-793D8 20-29 years, male 664.2
GTEX-WRHK-1026-SM-4MVOD 20-29 years, female 662.6
GTEX-UPK5-2026-SM-4JBIM 40-49 years, male 650.0
GTEX-1HKZK-2226-SM-GA91V 40-49 years, male 645.0
GTEX-1AX8Z-2526-SM-731E3 60-69 years, male 636.4
GTEX-1PIEJ-1526-SM-E6CP8 20-29 years, female 626.3
GTEX-17MFQ-1026-SM-7KFSZ 20-29 years, male 620.5
GTEX-13RTK-0826-SM-5Q5C6 20-29 years, male 619.2
GTEX-1GL5R-2026-SM-7MKHP 50-59 years, male 616.6
GTEX-1K9T9-2726-SM-D4P3E 50-59 years, female 614.6
GTEX-ZF29-1626-SM-4WKFJ 60-69 years, female 614.0
GTEX-1H11D-2526-SM-9JGGU 40-49 years, male 602.6
GTEX-11P82-0826-SM-5P9GU 20-29 years, male 592.5
GTEX-ZQG8-2526-SM-57WEQ 60-69 years, female 584.6
GTEX-1LGOU-1426-SM-D3L8N 20-29 years, female 584.3
GTEX-17HHE-1726-SM-79OKT 50-59 years, male 568.9
GTEX-1MCYP-1626-SM-HLJQ5 20-29 years, female 567.9
GTEX-U8XE-2226-SM-HAUZQ 30-39 years, male 567.0
GTEX-1C475-1426-SM-793CH 40-49 years, female 566.8
GTEX-11LCK-1926-SM-5A5KE 30-39 years, male 564.2
GTEX-1RAZQ-2226-SM-DPRZR 30-39 years, male 563.3
GTEX-XPVG-1726-SM-4B65W 50-59 years, male 561.6
GTEX-1HSGN-2126-SM-GA8ZB 40-49 years, female 559.8
GTEX-1PDJ9-1826-SM-E9U66 20-29 years, male 559.7
GTEX-WHPG-1826-SM-GNTAH 50-59 years, male 559.6
GTEX-16AAH-1426-SM-7KFTR 50-59 years, male 556.4
GTEX-1HSMQ-2226-SM-C1YRD 50-59 years, male 554.9
GTEX-11TUW-1926-SM-5BC58 60-69 years, male 553.2
GTEX-1CAMS-2426-SM-7DHMV 40-49 years, female 546.0
GTEX-X15G-1426-SM-4PQZK 50-59 years, female 545.5
GTEX-WH7G-1626-SM-4LVMY 40-49 years, male 542.8
GTEX-1J8QM-1026-SM-C1YQA 60-69 years, female 529.2
GTEX-15DZA-0826-SM-6AJBF 30-39 years, female 529.0
GTEX-139YR-2226-SM-5IFFW 50-59 years, male 524.3
GTEX-WFG7-1726-SM-4LVME 20-29 years, male 515.7
GTEX-X3Y1-1526-SM-H6Q6X 40-49 years, male 498.8
GTEX-YJ8A-2126-SM-GQ1C7 20-29 years, male 494.2
GTEX-14PKU-1626-SM-6871C 40-49 years, female 492.2
GTEX-14PK6-1626-SM-6871I 70-79 years, female 491.5
GTEX-1IKOE-1926-SM-ARU7V 30-39 years, female 488.6
GTEX-1LBAC-1526-SM-CXZKU 20-29 years, male 485.5
GTEX-1HCUA-1726-SM-GA8Z2 50-59 years, female 480.4
GTEX-13113-1226-SM-5EGHT 60-69 years, female 476.2
GTEX-131XG-1726-SM-5LZUR 50-59 years, female 470.6
GTEX-12BJ1-1926-SM-5HL9Z 60-69 years, male 467.9
GTEX-14BMU-1426-SM-5TDE5 20-29 years, female 462.8
GTEX-WHSB-1026-SM-4M1XN 50-59 years, male 460.7
GTEX-XAJ8-0526-SM-47JYK 40-49 years, male 459.1
GTEX-ZP4G-1626-SM-57WGD 20-29 years, female 456.2
GTEX-1QPFJ-2626-SM-DPRZU 30-39 years, female 453.0
GTEX-139T6-1026-SM-5IJGC 50-59 years, male 452.0
GTEX-11NSD-1726-SM-5N9C3 20-29 years, male 437.2
GTEX-14PKV-2026-SM-6AJ9A 20-29 years, female 435.9
GTEX-1L5NE-1826-SM-EV79T 50-59 years, male 433.4
GTEX-14PJN-0826-SM-686ZL 30-39 years, male 426.6
GTEX-WFJO-0926-SM-4LVM2 30-39 years, male 425.8
GTEX-13O61-1326-SM-5KM31 60-69 years, male 424.6
GTEX-Y114-1426-SM-4TT6W 50-59 years, female 419.8
GTEX-1NHNU-2526-SM-HK79M 50-59 years, male 416.7
GTEX-ZLV1-1126-SM-4WWBW 60-69 years, female 416.4
GTEX-Z9EW-0926-SM-5CVMM 40-49 years, male 415.6
GTEX-14XAO-1926-SM-6ETZO 60-69 years, female 414.3
GTEX-11DXZ-1326-SM-5H11X 50-59 years, male 411.0
GTEX-1JK1U-1226-SM-CNNPN 60-69 years, male 409.5
GTEX-XBED-1426-SM-4AT4G 60-69 years, male 408.8
GTEX-1GMR2-1026-SM-7MKHJ 50-59 years, male 405.4
GTEX-XXEK-1026-SM-4BRUW 50-59 years, male 405.2
GTEX-WQUQ-2426-SM-4MVNW 60-69 years, male 402.8
GTEX-11VI4-1626-SM-5EQKO 40-49 years, female 396.7
GTEX-ZEX8-1826-SM-57WBH 50-59 years, male 392.5
GTEX-ZVP2-1726-SM-5GU5P 50-59 years, male 390.2
GTEX-13FH7-1226-SM-5IJFK 50-59 years, female 387.0
GTEX-13PL7-2626-SM-5IFH4 60-69 years, female 384.1
GTEX-11P7K-1626-SM-5GU63 30-39 years, male 378.4
GTEX-ZT9X-1026-SM-HLJS2 40-49 years, male 374.6
GTEX-11XUK-1426-SM-5EQMG 40-49 years, female 366.0
GTEX-11EQ9-1326-SM-5985X 30-39 years, male 362.2
GTEX-1KXAM-2026-SM-DHXKI 60-69 years, male 358.6
GTEX-1MA7W-0726-SM-HLJQU 20-29 years, female 358.1
GTEX-13FTW-2026-SM-5IJE2 40-49 years, male 357.9
GTEX-1JN76-1126-SM-C1YRL 20-29 years, female 356.8
GTEX-1399U-2126-SM-5IFEZ 50-59 years, female 356.2
GTEX-1399R-2026-SM-5K7WN 30-39 years, male 351.2
GTEX-VJYA-0926-SM-4KL1N 60-69 years, male 350.6
GTEX-ZA64-1226-SM-5HL7B 20-29 years, male 349.5
GTEX-1CAMR-0826-SM-7MKFK 20-29 years, male 347.6
GTEX-YEC4-1726-SM-4W21E 40-49 years, male 340.2
GTEX-ZG7Y-1926-SM-DNZZ5 50-59 years, male 339.6
GTEX-1QP2A-2426-SM-EXOJA 50-59 years, male 334.6
GTEX-16NGA-1126-SM-7KFSY 40-49 years, female 323.0
GTEX-14DAR-1426-SM-5RQIR 50-59 years, male 321.0
GTEX-14E6E-1626-SM-5RQI7 30-39 years, male 313.2
GTEX-ZLFU-1526-SM-4WWBT 40-49 years, male 311.7
GTEX-1S831-1526-SM-HLJQS 20-29 years, male 311.0
GTEX-WY7C-1826-SM-4ONCE 50-59 years, male 306.8
GTEX-X4LF-1326-SM-HLJSD 50-59 years, male 302.9
GTEX-13X6H-1826-SM-5O9D1 50-59 years, female 300.6
GTEX-ZV7C-1426-SM-GNTB8 50-59 years, male 297.0
GTEX-145LT-1026-SM-5LU9O 40-49 years, male 291.4
GTEX-16MTA-1526-SM-6LPJB 50-59 years, male 288.6
GTEX-ZYFG-2026-SM-5E43Y 60-69 years, female 288.0
GTEX-ZDTT-1726-SM-5HL69 60-69 years, male 287.1
GTEX-ZLWG-1626-SM-DNZZ1 50-59 years, female 283.5
GTEX-144GM-1026-SM-5O9AZ 20-29 years, male 282.0
GTEX-1J8Q3-2526-SM-CNNQ4 60-69 years, male 282.0
GTEX-ZZ64-0526-SM-5GZXM 20-29 years, male 279.9
GTEX-ZTSS-0926-SM-59865 40-49 years, male 275.6
GTEX-ZXES-1526-SM-5NQ95 30-39 years, female 274.3
GTEX-11DXX-1626-SM-5H11H 60-69 years, female 268.3
GTEX-15G1A-1726-SM-6LPI4 30-39 years, male 267.9
GTEX-XUZC-1426-SM-4BRV3 30-39 years, female 267.1
GTEX-ZTX8-0526-SM-59HLD 20-29 years, male 264.2
GTEX-XGQ4-1326-SM-4GIDU 50-59 years, male 263.0
GTEX-1399S-2026-SM-5KM4B 30-39 years, female 258.5
GTEX-X5EB-1626-SM-4E3IV 40-49 years, male 253.9
GTEX-YFCO-1326-SM-664NV 40-49 years, male 244.5
GTEX-ZPCL-1726-SM-57WEO 60-69 years, female 242.3
GTEX-YF7O-1826-SM-5IFIU 50-59 years, male 237.9
GTEX-YB5E-1526-SM-5IFIE 40-49 years, male 234.9
GTEX-Y9LG-1626-SM-5IFHM 30-39 years, male 234.1
GTEX-131XF-1326-SM-5GCMQ 60-69 years, male 228.7
GTEX-13CF3-1226-SM-5LZXN 60-69 years, female 228.0
GTEX-13D11-0726-SM-5LZZB 50-59 years, female 226.0
GTEX-11I78-1126-SM-5A5K5 50-59 years, female 220.8
GTEX-133LE-1426-SM-5IFH1 20-29 years, female 200.2
GTEX-1122O-1326-SM-5H11F 60-69 years, female 197.6
GTEX-1HBPN-1926-SM-GA91H 50-59 years, male 184.5
GTEX-14PN3-2026-SM-68729 60-69 years, female 182.9
GTEX-ZVZP-1826-SM-5GZXB 50-59 years, male 179.7
GTEX-14PJ6-1726-SM-6AJBN 60-69 years, female 179.5
GTEX-1AMFI-1926-SM-731F2 50-59 years, female 176.8
GTEX-1B8KE-1726-SM-7IGMN 50-59 years, male 171.6
GTEX-111YS-1426-SM-5GID8 60-69 years, male 134.9
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SMALL INTESTINE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

441.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Small intestine
Scaled Tags Per Million: 441.0
FF:10024-101D6 15,40,85 years, mixed 441.0

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