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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
107.1
nTPM
HPA Brain:
150.8
nTPM
GTEx:
107.1
nTPM
FANTOM5:
31.1
Scaled Tags Per Million
Pig:
116.9
nTPM
Mouse:
99.8
nTPM
Allen mouse:
4.5
Expression energy
MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
150.8
Sample id
Sample description
nTPM
Cuneiform nucleus nTPM: 94.5
2586
Male, age 75, left hemisphere
118.7
1827
Male, age 72, unknown
110.9
2828
Female, age 72, unknown
106.8
2019
Male, age 18, unknown
97.1
2666
Male, age 74, left hemisphere
96.1
2219
Male, age 76, both hemispheres
91.8
2411
Female, age 72, unknown
84.4
1870
Female, age 42, unknown
83.9
1833
Male, age 53, unknown
80.1
1830
Male, age 51, unknown
75.4
Dorsal raphe nucleus nTPM: 134.3
2298
Female, age 72, unknown
194.4
2047
Male, age 72, unknown
138.9
2016
Female, age 72, unknown
138.6
1828
Male, age 53, unknown
105.5
2750
Male, age 76, both hemispheres
94.4
Inferior colliculus nTPM: 105.1
2097
Female, age 72, unknown
117.1
1848
Female, age 42, unknown
102.8
1890
Male, age 53, unknown
101.9
2849
Male, age 72, unknown
98.5
Median raphe nucleus nTPM: 114.2
2220
Male, age 76, midline
114.2
Periaquaductal grey, anterior nTPM: 135.3
1795
Male, age 51, unknown
151.1
2502
Female, age 75, unknown
145.5
1947
Male, age 18, unknown
109.5
Periaquaductal grey, dorsal nTPM: 140.5
1840
Male, age 53, unknown
179.0
2850
Male, age 76, both hemispheres
152.6
2464
Female, age 72, unknown
119.5
1831
Male, age 72, unknown
110.9
Periaquaductal grey, lateral nTPM: 150.8
2272
Male, age 74, both hemispheres
165.2
2140
Male, age 76, both hemispheres
153.6
2053
Male, age 18, unknown
133.7
Pretectal area nTPM: 134.5
2273
Male, age 74, both hemispheres
198.9
2224
Female, age 72, unknown
155.5
1816
Male, age 51, unknown
148.6
1944
Female, age 72, unknown
135.3
1817
Female, age 42, unknown
133.3
1815
Male, age 53, unknown
133.2
2007
Male, age 72, unknown
128.8
2407
Male, age 75, both hemispheres
121.8
2667
Female, age 75, unknown
117.8
2825
Male, age 18, unknown
107.0
2316
Male, age 76, right hemisphere
98.9
Red nucleus nTPM: 77.3
2785
Male, age 18, unknown
106.0
2725
Female, age 75, unknown
87.1
1821
Female, age 72, unknown
79.9
1904
Male, age 53, unknown
78.8
2584
Male, age 75, left hemisphere
78.2
2769
Male, age 72, unknown
78.0
2227
Male, age 72, unknown
77.5
2503
Female, age 72, unknown
77.4
1954
Female, age 42, unknown
74.4
1865
Male, age 51, unknown
69.1
2823
Male, age 76, right hemisphere
61.6
2588
Male, age 74, left hemisphere
59.8
Substantia nigra nTPM: 120.5
1916
Female, age 42, unknown
151.6
1851
Male, age 51, unknown
137.4
2241
Male, age 72, unknown
131.3
2699
Male, age 18, unknown
127.6
2590
Female, age 75, unknown
120.8
1889
Female, age 72, unknown
112.1
1941
Male, age 53, unknown
108.2
2583
Male, age 75, right hemisphere
108.2
2665
Male, age 74, both hemispheres
107.7
2409
Female, age 72, unknown
100.2
Superior colliculus nTPM: 115.3
2664
Male, age 75, both hemispheres
164.4
1796
Male, age 53, unknown
130.0
2087
Female, age 72, unknown
128.6
2261
Male, age 18, unknown
125.6
2587
Male, age 74, left hemisphere
118.2
1995
Male, age 72, unknown
107.5
1839
Male, age 51, unknown
105.6
2668
Female, age 75, unknown
101.9
1913
Female, age 42, unknown
89.4
1895
Male, age 76, right hemisphere
82.4
Ventral tegmental area nTPM: 114.6
2410
Female, age 72, unknown
127.0
1915
Female, age 42, unknown
125.1
2021
Male, age 53, unknown
120.7
1942
Male, age 51, unknown
115.3
2218
Male, age 76, both hemispheres
107.8
2223
Female, age 72, unknown
91.7
MIDBRAIN - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
107.1
GTEx sample id
Sample description
nTPM
Brain - Substantia nigra Average nTPM: 107.1
Samples: 139
Max nTPM: 242.9
Min nTPM: 21.6
Std nTPM: 34.5
Median nTPM: 103.2
GTEX-1H1ZS-0011-R2b-SM-CL54Q
70-79 years, male
242.9
GTEX-1GZ2Q-0011-R2b-SM-9OSWO
40-49 years, male
213.4
GTEX-YFC4-0011-R2a-SM-4V6DZ
40-49 years, female
212.3
GTEX-1GN2E-0011-R2a-SM-9WG7D
60-69 years, male
190.4
GTEX-13SLW-0011-R2b-SM-5O9C6
70-79 years, male
189.2
GTEX-1H3VE-0011-R2a-SM-CE6SA
40-49 years, male
165.5
GTEX-15EO6-0011-R2a-SM-6M46R
50-59 years, male
164.6
GTEX-13CF2-0011-R2a-SM-5L3DC
60-69 years, male
162.8
GTEX-QMR6-0011-R2A-SM-32PKV
50-59 years, male
160.0
GTEX-12ZZX-0011-R2a-SM-5EGLG
40-49 years, female
158.8
GTEX-1H3O1-0011-R2b-SM-CKZOT
60-69 years, male
157.5
GTEX-1C6VR-0011-R2a-SM-7RHGZ
60-69 years, male
156.8
GTEX-1B996-0011-R2a-SM-7IGON
60-69 years, male
151.7
GTEX-1RLM8-0011-R2a-SM-EZ6N4
50-59 years, male
150.5
GTEX-1IGQW-0011-R2b-SM-D4P26
60-69 years, male
150.1
GTEX-13OVJ-0011-R2b-SM-5L3GP
50-59 years, female
149.8
GTEX-11GSP-0011-R2b-SM-9QEGE
60-69 years, female
148.6
GTEX-1EKGG-0011-R2a-SM-CE6R8
60-69 years, male
147.6
GTEX-1B8L1-0011-R2a-SM-9OSVL
60-69 years, male
147.4
GTEX-1GMR8-0011-R2a-SM-CE6RD
50-59 years, female
146.5
GTEX-YJ89-0011-R2b-SM-4RGLT
60-69 years, male
146.1
GTEX-R55E-0011-R2A-SM-EYYV9
20-29 years, male
141.6
GTEX-13X6K-0011-R2b-SM-5P9K3
60-69 years, female
139.7
GTEX-1B8SG-0011-R2b-SM-79OOT
50-59 years, male
137.2
GTEX-1HSMO-0011-R2a-SM-CL553
60-69 years, male
134.7
GTEX-1EU9M-0011-R2b-SM-9QEH7
60-69 years, male
131.8
GTEX-1F6I4-0011-R2a-SM-CL536
60-69 years, male
129.7
GTEX-1LVAO-0011-R2a-SM-EYYX1
60-69 years, male
128.6
GTEX-1LSNL-0011-R2a-SM-EZ6MK
50-59 years, male
126.5
GTEX-11PRG-0011-R2a-SM-69LQ5
50-59 years, male
126.2
GTEX-13OW8-0011-R2a-SM-5L3G2
60-69 years, male
125.4
GTEX-1B933-0011-R2b-SM-7IGNM
50-59 years, female
123.4
GTEX-14BIN-0011-R2a-SM-5S2RJ
50-59 years, female
123.0
GTEX-13G51-0011-R2b-SM-5LZXS
60-69 years, male
120.5
GTEX-13O3O-0011-R2b-SM-5P9H1
60-69 years, female
119.7
GTEX-1313W-0011-R2a-SM-5EGLF
50-59 years, female
118.9
GTEX-15DYW-0011-R2b-SM-7KUKY
60-69 years, female
118.3
GTEX-T6MN-0011-R2A-SM-32QOW
50-59 years, male
117.5
GTEX-12WSA-0011-R2a-SM-57WDK
60-69 years, male
117.0
GTEX-QDT8-0011-R2A-SM-32PKQ
30-39 years, female
117.0
GTEX-1F6IF-0011-R2b-SM-9QEHB
60-69 years, male
116.2
GTEX-1I1GS-0011-R2b-SM-CMKHG
60-69 years, male
116.0
GTEX-11TUW-0011-R2b-SM-DO92T
60-69 years, male
114.8
GTEX-13O3Q-0011-R2b-SM-5KM3K
50-59 years, male
113.4
GTEX-ZV68-0011-R2a-SM-4YCDK
50-59 years, female
113.4
GTEX-1399T-0011-R2b-SM-5DUXM
60-69 years, male
113.1
GTEX-11GSO-0011-R2a-SM-57WDF
60-69 years, male
112.9
GTEX-12WSH-0011-R2a-SM-5GU68
50-59 years, male
112.9
GTEX-1IL2U-0011-R2a-SM-ARU6V
60-69 years, male
112.9
GTEX-14PJO-0011-R2a-SM-5ZZVF
60-69 years, male
112.2
GTEX-1EMGI-0011-R2b-SM-9OSVS
60-69 years, male
111.9
GTEX-13RTJ-0011-R2a-SM-5PNW9
60-69 years, male
111.8
GTEX-13NYS-0011-R2b-SM-5MR4G
60-69 years, male
111.6
GTEX-11EMC-0011-R2b-SM-DO114
60-69 years, female
111.5
GTEX-13N2G-0011-R2a-SM-5MR4Q
60-69 years, male
111.4
GTEX-1A3MX-0011-R2b-SM-7EWFL
60-69 years, male
111.3
GTEX-1HT8W-0011-R2a-SM-CMKH9
30-39 years, male
110.6
GTEX-1E1VI-0011-R2a-SM-9QEGS
50-59 years, male
109.8
GTEX-1F48J-0011-R2a-SM-CL535
50-59 years, female
108.8
GTEX-1MA7X-0011-R2b-SM-EZ6MT
60-69 years, male
108.6
GTEX-14BIM-0011-R2b-SM-69LQ6
60-69 years, female
107.6
GTEX-13FXS-0011-R2b-SM-5K7XX
50-59 years, male
106.9
GTEX-1J8Q2-0011-R2b-SM-EAZ2X
60-69 years, male
106.3
GTEX-18464-0011-R2a-SM-731AL
50-59 years, male
106.1
GTEX-11WQC-0011-R2a-SM-DO927
60-69 years, male
105.2
GTEX-15DCD-0011-R2b-SM-6LPIE
70-79 years, female
104.8
GTEX-16Z82-0011-R2b-SM-79OK9
60-69 years, male
104.5
GTEX-15ER7-0011-R2a-SM-6M46O
20-29 years, female
103.7
GTEX-12WSD-0011-R2a-SM-5LZWB
60-69 years, female
103.2
GTEX-1JMQK-0011-R2a-SM-EYYXQ
60-69 years, male
103.2
GTEX-13OW6-0011-R2a-SM-5L3HG
50-59 years, male
103.1
GTEX-1GN1U-0011-R2a-SM-CL53A
50-59 years, female
102.7
GTEX-Z93S-0011-R2a-SM-4RGNG
50-59 years, male
102.3
GTEX-1A8G7-0011-R2a-SM-7IGQI
60-69 years, male
101.9
GTEX-1HR98-0011-R2a-SM-ARL7A
60-69 years, male
101.5
GTEX-S7SE-0011-R2A-SM-2XCDC
50-59 years, male
101.2
GTEX-15RJE-0011-R2b-SM-79OMP
40-49 years, male
101.1
GTEX-1I1CD-0011-R2a-SM-CM2T3
60-69 years, female
100.4
GTEX-132Q8-0011-R2b-SM-5EQ5Z
60-69 years, male
100.3
GTEX-XMD1-0011-R2B-SM-4AT5N
60-69 years, male
100.2
GTEX-1CB4G-0011-R2a-SM-9QEGQ
60-69 years, male
100.2
GTEX-17HG3-0011-R2a-SM-7MGVX
30-39 years, female
100.1
GTEX-1H23P-0011-R2a-SM-CKZP3
60-69 years, male
99.9
GTEX-14ASI-0011-R2b-SM-5YY9H
60-69 years, male
99.2
GTEX-14C5O-0011-R2a-SM-5ZZV2
60-69 years, male
99.2
GTEX-PWO3-0011-R2A-SM-2S1OX
60-69 years, female
99.0
GTEX-11GS4-0011-R2a-SM-DO942
60-69 years, male
97.9
GTEX-1F75B-0011-R2a-SM-ARL8I
50-59 years, male
96.9
GTEX-11UD1-0011-R2b-SM-5BC6O
40-49 years, female
96.7
GTEX-XLM4-0011-R2B-SM-4AT5Z
60-69 years, male
96.6
GTEX-1GN73-0011-R2a-SM-CJI2V
60-69 years, male
96.2
GTEX-13SLX-0011-R2b-SM-5S2VP
50-59 years, female
96.1
GTEX-15CHQ-0011-R2b-SM-6AJAD
60-69 years, male
95.4
GTEX-1IKJJ-0011-R2b-SM-ARZLJ
60-69 years, male
93.3
GTEX-ZDXO-0011-R2b-SM-4WKFG
60-69 years, male
92.7
GTEX-P44G-0011-R2A-SM-2XCD2
30-39 years, male
92.6
GTEX-NPJ8-0011-R2a-SM-2TC6M
40-49 years, male
92.3
GTEX-17EVP-0011-R2a-SM-7LG4W
40-49 years, male
90.7
GTEX-1GTWX-0011-R2b-SM-ADEH5
60-69 years, male
90.6
GTEX-147GR-0011-R2b-SM-5S2RQ
60-69 years, male
90.4
GTEX-1LVA9-0011-R2a-SM-EZ6MJ
50-59 years, male
90.3
GTEX-13QJC-0011-R2b-SM-5PNUN
60-69 years, female
90.1
GTEX-11ZTS-0011-R2b-SM-5BC75
60-69 years, female
90.0
GTEX-1LH75-0011-R2b-SM-EYYWQ
50-59 years, female
89.9
GTEX-14JG1-0011-R2a-SM-5ZZVE
40-49 years, male
88.3
GTEX-13PDP-0011-R2b-SM-5O9DH
60-69 years, male
86.1
GTEX-1445S-0011-R2b-SM-5PNUH
60-69 years, male
84.2
GTEX-14PN4-0011-R2a-SM-6EU2Y
50-59 years, male
84.0
GTEX-1J1OQ-0011-R2b-SM-ARU88
40-49 years, female
83.3
GTEX-13X6I-0011-R2b-SM-5PNWQ
60-69 years, male
82.3
GTEX-1HB9E-0011-R2b-SM-A96RW
50-59 years, male
82.0
GTEX-1I1GV-0011-R2a-SM-ARZLF
60-69 years, male
82.0
GTEX-145LS-0011-R2a-SM-5PNZI
60-69 years, female
81.9
GTEX-12WSF-0011-R2a-SM-5DUVU
70-79 years, male
81.2
GTEX-131XH-0011-R2b-SM-5DUVY
50-59 years, male
81.0
GTEX-11DZ1-0011-R2a-SM-DNZZM
50-59 years, male
80.8
GTEX-1IKOH-0011-R2a-SM-CMKHO
60-69 years, female
79.6
GTEX-NL4W-0011-R2a-SM-2I5GV
50-59 years, male
79.2
GTEX-WHSE-0011-R2A-SM-3P5ZL
20-29 years, male
78.4
GTEX-1IY9M-0011-R2a-SM-D4P29
60-69 years, male
75.3
GTEX-RU72-0011-R2A-SM-2TF6O
50-59 years, female
74.7
GTEX-T2IS-0011-R2A-SM-32QPF
20-29 years, female
74.2
GTEX-N7MS-0011-R2a-SM-2HML6
60-69 years, male
73.4
GTEX-OXRO-0011-R2A-SM-3NB1W
60-69 years, female
72.9
GTEX-X585-0011-R2B-SM-46MVF
50-59 years, male
72.2
GTEX-1HFI6-0011-R2a-SM-CMKH5
40-49 years, male
70.1
GTEX-T5JC-0011-R2A-SM-32PLZ
20-29 years, male
67.7
GTEX-OHPN-0011-R2A-SM-2I5FB
60-69 years, female
63.7
GTEX-ZAB4-0011-R2a-SM-4RGNP
40-49 years, male
57.7
GTEX-1H1DG-0011-R2a-SM-ADEIQ
70-79 years, male
57.0
GTEX-Q2AG-0011-R2A-SM-2HMIT
40-49 years, female
54.7
GTEX-NPJ7-0011-R2a-SM-2I3GF
60-69 years, female
49.9
GTEX-13NYB-0011-R2a-SM-5MR3C
40-49 years, male
49.4
GTEX-UTHO-0011-R2A-SM-3GIKC
60-69 years, male
48.2
GTEX-139TS-0011-R2b-SM-5J1MX
60-69 years, male
47.1
GTEX-1LB8K-0011-R2a-SM-EZ6MQ
50-59 years, male
44.8
GTEX-N7MT-0011-R2a-SM-2I3GI
60-69 years, female
41.6
GTEX-ZE9C-0011-R2a-SM-4WKGH
60-69 years, male
37.6
GTEX-X4XX-0011-R2A-SM-3P623
60-69 years, male
21.6
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MIDBRAIN - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
99.8
Mouse sample
Sample description
nTPM
Midbrain nTPM: 99.8
Samples: 4
Max nTPM: 101.6
Min nTPM: 98.3
Sample A
Male
100.4
Sample B
Male
101.6
Sample C
Female
98.3
Sample D
Female
99.0
MIDBRAIN - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.