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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
HPA Brain:
66.5
nTPM
FANTOM5:
77.1
Scaled Tags Per Million
Pig:
35.9
nTPM
Allen mouse:
15.6
Expression energy
PONS - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
66.5
Sample id
Sample description
nTPM
Anterior cochlear nucleus, ventral nTPM: 48.3
2188
Female, age 91, both hemispheres
50.5
1984
Male, age 76, both hemispheres
49.4
2090
Male, age 80, both hemispheres
47.5
2301
Female, age 85, both hemispheres
45.9
Dorsal cochlear nucleus nTPM: 50.1
2802
Male, age 74, right hemisphere
57.1
2187
Female, age 91, both hemispheres
51.0
2058
Male, age 76, both hemispheres
49.3
2370
Male, age 61, both hemispheres
47.2
2378
Male, age 80, both hemispheres
45.9
Dorsal tegmental nucleus nTPM: 48.2
2326
Male, age 74, both hemispheres
55.4
2083
Male, age 80, both hemispheres
53.4
1936
Male, age 76, left hemisphere
45.1
2358
Male, age 61, both hemispheres
39.1
Dorsolateral tegmental area nTPM: 51.7
2751
Female, age 85, both hemispheres
58.5
2654
Male, age 80, both hemispheres
57.1
2360
Male, age 74, both hemispheres
50.5
2141
Male, age 76, both hemispheres
49.9
2337
Male, age 61, both hemispheres
42.6
Kolliker-Fuse nucleus nTPM: 50.0
2163
Male, age 80, both hemispheres
54.2
2793
Female, age 91, left hemisphere
50.1
2315
Male, age 76, right hemisphere
45.8
Lateral lemniscal nuclei nTPM: 56.5
2169
Male, age 76, both hemispheres
68.0
2036
Male, age 80, both hemispheres
62.4
2746
Female, age 85, left hemisphere
57.1
2453
Male, age 74, right hemisphere
54.6
2320
Female, age 91, left hemisphere
40.6
Lateral parabrachial nucleus nTPM: 51.4
2139
Female, age 85, right hemisphere
59.8
2013
Male, age 80, both hemispheres
57.9
2792
Male, age 76, both hemispheres
44.8
2790
Male, age 61, both hemispheres
43.2
Lateral vestibular nucleus nTPM: 47.4
2184
Male, age 76, both hemispheres
48.1
2311
Male, age 80, both hemispheres
46.7
Locus coeruleus nTPM: 66.5
2014
Male, age 55, unknown
85.3
2123
Female, age 91, both hemispheres
74.6
2788
Male, age 74, unknown
71.9
2720
Male, age 74, both hemispheres
60.0
1980
Male, age 76, both hemispheres
59.8
2317
Female, age 72, unknown
58.9
2162
Male, age 80, both hemispheres
55.1
Medial parabrachial nucleus nTPM: 50.0
2854
Male, age 80, both hemispheres
55.0
2170
Female, age 91, both hemispheres
54.8
2463
Female, age 85, right hemisphere
53.7
2786
Male, age 76, both hemispheres
44.7
2156
Male, age 61, both hemispheres
42.0
Medial periolivary nuclei nTPM: 57.7
2063
Male, age 76, both hemispheres
75.7
2171
Female, age 85, both hemispheres
69.4
2791
Male, age 74, right hemisphere
58.0
2081
Male, age 80, both hemispheres
43.6
2458
Female, age 91, both hemispheres
41.7
Motor facial nucleus nTPM: 52.6
2062
Male, age 76, both hemispheres
80.3
2365
Male, age 74, right hemisphere
54.9
2697
Female, age 85, both hemispheres
51.7
2795
Female, age 91, both hemispheres
46.2
2126
Male, age 61, both hemispheres
42.9
2327
Male, age 80, both hemispheres
39.7
Motor trigeminal nucleus nTPM: 46.4
2560
Male, age 74, both hemispheres
52.8
2079
Male, age 80, both hemispheres
51.8
2309
Male, age 76, both hemispheres
46.0
2321
Female, age 91, both hemispheres
42.4
2335
Male, age 61, both hemispheres
39.0
Nuclei of the trapezoid body nTPM: 62.1
2159
Male, age 61, both hemispheres
74.8
1983
Male, age 76, both hemispheres
73.2
2735
Female, age 85, both hemispheres
70.0
2166
Male, age 80, both hemispheres
49.5
2368
Female, age 91, both hemispheres
43.0
Nucleus raphe magnus nTPM: 57.7
2160
Male, age 61, both hemispheres
68.5
2172
Female, age 85, both hemispheres
65.8
2051
Male, age 76, both hemispheres
63.1
2455
Male, age 74, both hemispheres
53.4
2328
Male, age 80, both hemispheres
47.7
2459
Female, age 91, both hemispheres
47.3
Paramedian reticular nucleus nTPM: 60.8
2050
Female, age 85, both hemispheres
74.2
2057
Male, age 80, both hemispheres
59.2
2052
Male, age 76, both hemispheres
58.3
2313
Male, age 61, both hemispheres
51.4
Pedunculopontine tegmental nucleus nTPM: 51.8
1921
Female, age 85, both hemispheres
56.1
2334
Male, age 80, both hemispheres
55.8
2338
Male, age 61, both hemispheres
43.4
Pontine nuclei nTPM: 63.1
1863
Male, age 55, unknown
79.8
2727
Male, age 61, right hemisphere
73.2
2109
Female, age 72, unknown
69.5
2787
Female, age 85, both hemispheres
66.8
1968
Male, age 76, left hemisphere
61.6
2454
Male, age 74, left hemisphere
60.3
2319
Female, age 91, both hemispheres
47.2
2115
Male, age 80, left hemisphere
46.9
Pontine raphe nucleus nTPM: 61.6
2122
Female, age 85, midline
68.0
2853
Male, age 76, midline
55.2
Posteroventral cochlear nucleus nTPM: 51.2
2752
Female, age 85, both hemispheres
64.7
2070
Male, age 76, both hemispheres
51.2
2341
Male, age 80, both hemispheres
47.8
2135
Female, age 91, both hemispheres
46.6
2371
Male, age 61, both hemispheres
45.7
Principal sensory trigeminal nucleus nTPM: 52.7
2158
Male, age 61, both hemispheres
60.2
2008
Male, age 80, left hemisphere
55.8
2324
Male, age 76, both hemispheres
51.6
2367
Female, age 91, left hemisphere
43.4
Reticular pontine nucleus, caudal nTPM: 52.2
2092
Male, age 76, both hemispheres
65.2
2559
Male, age 74, both hemispheres
58.8
2332
Male, age 80, right hemisphere
43.0
2457
Female, age 91, both hemispheres
41.7
Reticular pontine nucleus, oral nTPM: 54.3
2012
Female, age 85, both hemispheres
70.5
1939
Male, age 80, both hemispheres
56.9
2167
Male, age 76, both hemispheres
53.9
2361
Male, age 74, both hemispheres
46.7
2366
Female, age 91, both hemispheres
43.4
Reticulotegmental nucleus nTPM: 49.8
2325
Male, age 76, both hemispheres
57.2
2452
Male, age 74, both hemispheres
53.0
2322
Female, age 91, both hemispheres
46.2
2333
Male, age 80, both hemispheres
42.9
Spinal trigeminal nucleus, oral nTPM: 48.3
2737
Female, age 85, both hemispheres
49.3
2164
Male, age 80, both hemispheres
49.1
1978
Male, age 76, both hemispheres
46.4
Subcoeruleus area nTPM: 52.3
1958
Male, age 80, both hemispheres
58.9
2369
Female, age 85, left hemisphere
55.7
2323
Female, age 91, left hemisphere
53.6
2451
Male, age 74, both hemispheres
49.7
2089
Male, age 76, left hemisphere
43.7
Superior olive nTPM: 57.2
1875
Female, age 85, both hemispheres
73.2
2020
Male, age 76, both hemispheres
58.2
2364
Male, age 74, right hemisphere
56.1
2561
Female, age 91, both hemispheres
50.1
2329
Male, age 80, right hemisphere
48.3
Ventral periolivary nuclei nTPM: 57.9
2130
Female, age 85, both hemispheres
67.1
2023
Male, age 76, both hemispheres
63.0
2165
Male, age 80, both hemispheres
58.0
2794
Female, age 91, left hemisphere
43.5
Ventrolateral tegmental area, A5 NE cell group nTPM: 54.0
1959
Male, age 76, both hemispheres
65.2
2840
Female, age 85, both hemispheres
59.4
2161
Male, age 80, both hemispheres
52.6
2449
Male, age 74, both hemispheres
52.6
2359
Male, age 61, both hemispheres
50.8
2456
Female, age 91, both hemispheres
43.4
PONS - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
35.9
Pig sample
Sample description
nTPM
Pons nTPM: 36.0
Samples: 4
Max nTPM: 39.8
Min nTPM: 30.5
Sample A
Female
39.1
Sample B
Female
30.5
Sample C
Male
34.5
Sample D
Male
39.8
PONS - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.
The Human Protein Atlas project is funded
