MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:4.1 nTPM
HPA Brain:13.3 nTPM
GTEx:4.1 nTPM
FANTOM5:28.8 Scaled Tags Per Million
Mouse:12.1 nTPM
Allen mouse:0.1 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 13.3
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 11.8
2019 Male, age 18, unknown 14.9
2411 Female, age 72, unknown 12.7
1827 Male, age 72, unknown 12.6
2219 Male, age 76, both hemispheres 11.8
2586 Male, age 75, left hemisphere 11.5
1870 Female, age 42, unknown 11.3
2828 Female, age 72, unknown 11.0
1830 Male, age 51, unknown 10.9
1833 Male, age 53, unknown 10.6
2666 Male, age 74, left hemisphere 10.2
Dorsal raphe nucleus
nTPM: 10.7
2750 Male, age 76, both hemispheres 12.0
2298 Female, age 72, unknown 11.2
1828 Male, age 53, unknown 10.7
2016 Female, age 72, unknown 9.9
2047 Male, age 72, unknown 9.6
Inferior colliculus
nTPM: 11.1
2097 Female, age 72, unknown 13.6
1890 Male, age 53, unknown 12.0
1848 Female, age 42, unknown 10.2
2849 Male, age 72, unknown 8.5
Median raphe nucleus
nTPM: 11.7
2220 Male, age 76, midline 11.7
Periaquaductal grey, anterior
nTPM: 12.1
2502 Female, age 75, unknown 12.8
1947 Male, age 18, unknown 12.6
1795 Male, age 51, unknown 10.8
Periaquaductal grey, dorsal
nTPM: 10.2
1831 Male, age 72, unknown 11.1
2464 Female, age 72, unknown 10.8
2850 Male, age 76, both hemispheres 10.3
1840 Male, age 53, unknown 8.6
Periaquaductal grey, lateral
nTPM: 10.8
2272 Male, age 74, both hemispheres 12.4
2053 Male, age 18, unknown 10.3
2140 Male, age 76, both hemispheres 9.8
Pretectal area
nTPM: 13.3
1816 Male, age 51, unknown 16.4
2007 Male, age 72, unknown 15.7
1817 Female, age 42, unknown 15.3
1815 Male, age 53, unknown 14.7
1944 Female, age 72, unknown 14.4
2667 Female, age 75, unknown 13.8
2273 Male, age 74, both hemispheres 13.7
2224 Female, age 72, unknown 11.0
2316 Male, age 76, right hemisphere 11.0
2407 Male, age 75, both hemispheres 10.9
2825 Male, age 18, unknown 9.0
Red nucleus
nTPM: 11.4
2785 Male, age 18, unknown 13.9
1821 Female, age 72, unknown 12.8
1865 Male, age 51, unknown 11.9
1904 Male, age 53, unknown 11.8
2823 Male, age 76, right hemisphere 11.3
1954 Female, age 42, unknown 11.2
2725 Female, age 75, unknown 11.2
2588 Male, age 74, left hemisphere 11.0
2503 Female, age 72, unknown 10.5
2769 Male, age 72, unknown 10.5
2227 Male, age 72, unknown 10.4
2584 Male, age 75, left hemisphere 10.0
Substantia nigra
nTPM: 11.5
1941 Male, age 53, unknown 13.7
1889 Female, age 72, unknown 12.6
1916 Female, age 42, unknown 12.1
1851 Male, age 51, unknown 11.8
2241 Male, age 72, unknown 11.8
2583 Male, age 75, right hemisphere 11.8
2409 Female, age 72, unknown 11.2
2590 Female, age 75, unknown 11.1
2665 Male, age 74, both hemispheres 9.9
2699 Male, age 18, unknown 9.3
Superior colliculus
nTPM: 11.9
1995 Male, age 72, unknown 13.4
2087 Female, age 72, unknown 13.3
2261 Male, age 18, unknown 13.3
1913 Female, age 42, unknown 13.2
1895 Male, age 76, right hemisphere 11.8
1796 Male, age 53, unknown 11.3
2587 Male, age 74, left hemisphere 11.3
2668 Female, age 75, unknown 11.0
1839 Male, age 51, unknown 10.6
2664 Male, age 75, both hemispheres 9.8
Ventral tegmental area
nTPM: 10.4
2410 Female, age 72, unknown 12.0
2223 Female, age 72, unknown 10.7
1942 Male, age 51, unknown 10.3
2218 Male, age 76, both hemispheres 10.3
1915 Female, age 42, unknown 10.1
2021 Male, age 53, unknown 9.2

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 4.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 4.1
Samples: 139

Max nTPM: 9.3
Min nTPM: 2.0
Std nTPM: 1.2
Median nTPM: 3.8
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 9.3
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 8.1
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 7.1
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 7.0
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 6.9
GTEX-QDT8-0011-R2A-SM-32PKQ 30-39 years, female 6.8
GTEX-N7MT-0011-R2a-SM-2I3GI 60-69 years, female 6.7
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 6.6
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 6.6
GTEX-QMR6-0011-R2A-SM-32PKV 50-59 years, male 6.5
GTEX-RU72-0011-R2A-SM-2TF6O 50-59 years, female 5.8
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 28.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 28.8
FF:10158-103A5 76 years, female 28.8

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 12.1
Mouse sample Sample description nTPM
Midbrain
nTPM: 12.1
Samples: 4

Max nTPM: 13.6
Min nTPM: 10.2
Sample A Male 10.2
Sample B Male 13.6
Sample C Female 12.7
Sample D Female 12.0

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 0.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.1
69015631 Antisense, RP_050315_01_D05, Mouse strain C57BL/6J (56 days, male) 0.1

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