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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
41.1
nTPM
HPA Brain:
138.7
nTPM
GTEx:
41.1
nTPM
FANTOM5:
38.3
Scaled Tags Per Million
Pig:
79.5
nTPM
Mouse:
114.8
nTPM
Allen mouse:
4.0
Expression energy
MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
138.7
Sample id
Sample description
nTPM
Cuneiform nucleus nTPM: 110.7
2219
Male, age 76, both hemispheres
151.2
1827
Male, age 72, unknown
131.9
2586
Male, age 75, left hemisphere
123.8
2828
Female, age 72, unknown
122.5
2411
Female, age 72, unknown
112.5
2666
Male, age 74, left hemisphere
108.1
1870
Female, age 42, unknown
101.3
1833
Male, age 53, unknown
96.9
1830
Male, age 51, unknown
86.2
2019
Male, age 18, unknown
72.6
Dorsal raphe nucleus nTPM: 112.0
2298
Female, age 72, unknown
138.1
2047
Male, age 72, unknown
123.7
2750
Male, age 76, both hemispheres
108.4
1828
Male, age 53, unknown
94.9
2016
Female, age 72, unknown
94.8
Inferior colliculus nTPM: 93.6
2849
Male, age 72, unknown
102.0
2097
Female, age 72, unknown
95.7
1848
Female, age 42, unknown
90.8
1890
Male, age 53, unknown
86.1
Median raphe nucleus nTPM: 127.3
2220
Male, age 76, midline
127.3
Periaquaductal grey, anterior nTPM: 138.7
1795
Male, age 51, unknown
152.8
1947
Male, age 18, unknown
141.9
2502
Female, age 75, unknown
121.3
Periaquaductal grey, dorsal nTPM: 113.1
1840
Male, age 53, unknown
135.4
1831
Male, age 72, unknown
110.8
2464
Female, age 72, unknown
107.8
2850
Male, age 76, both hemispheres
98.4
Periaquaductal grey, lateral nTPM: 116.2
2053
Male, age 18, unknown
125.5
2272
Male, age 74, both hemispheres
112.8
2140
Male, age 76, both hemispheres
110.3
Pretectal area nTPM: 113.5
1816
Male, age 51, unknown
141.8
1944
Female, age 72, unknown
132.6
2224
Female, age 72, unknown
130.2
2825
Male, age 18, unknown
123.7
2667
Female, age 75, unknown
109.4
2407
Male, age 75, both hemispheres
104.8
2007
Male, age 72, unknown
104.5
2273
Male, age 74, both hemispheres
103.3
1815
Male, age 53, unknown
102.5
2316
Male, age 76, right hemisphere
99.3
1817
Female, age 42, unknown
96.4
Red nucleus nTPM: 80.5
2584
Male, age 75, left hemisphere
107.2
2725
Female, age 75, unknown
94.1
2588
Male, age 74, left hemisphere
91.8
2503
Female, age 72, unknown
79.2
1904
Male, age 53, unknown
78.8
2227
Male, age 72, unknown
78.8
2769
Male, age 72, unknown
78.1
2785
Male, age 18, unknown
76.3
2823
Male, age 76, right hemisphere
73.8
1954
Female, age 42, unknown
72.6
1821
Female, age 72, unknown
68.6
1865
Male, age 51, unknown
67.2
Substantia nigra nTPM: 101.8
1916
Female, age 42, unknown
125.2
1851
Male, age 51, unknown
110.1
2590
Female, age 75, unknown
105.6
2665
Male, age 74, both hemispheres
105.1
2241
Male, age 72, unknown
101.8
1889
Female, age 72, unknown
100.8
1941
Male, age 53, unknown
99.1
2699
Male, age 18, unknown
94.6
2583
Male, age 75, right hemisphere
92.1
2409
Female, age 72, unknown
83.3
Superior colliculus nTPM: 111.5
2261
Male, age 18, unknown
149.7
1796
Male, age 53, unknown
144.1
2087
Female, age 72, unknown
130.6
2664
Male, age 75, both hemispheres
118.1
2668
Female, age 75, unknown
104.3
1839
Male, age 51, unknown
102.2
1895
Male, age 76, right hemisphere
95.1
2587
Male, age 74, left hemisphere
94.2
1913
Female, age 42, unknown
93.6
1995
Male, age 72, unknown
83.1
Ventral tegmental area nTPM: 109.9
1915
Female, age 42, unknown
116.0
1942
Male, age 51, unknown
115.8
2021
Male, age 53, unknown
111.6
2218
Male, age 76, both hemispheres
108.1
2410
Female, age 72, unknown
106.0
2223
Female, age 72, unknown
101.8
MIDBRAIN - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
41.1
GTEx sample id
Sample description
nTPM
Brain - Substantia nigra Average nTPM: 41.1
Samples: 139
Max nTPM: 75.5
Min nTPM: 18.8
Std nTPM: 11.2
Median nTPM: 39.0
GTEX-13O3Q-0011-R2b-SM-5KM3K
50-59 years, male
75.5
GTEX-13OW6-0011-R2a-SM-5L3HG
50-59 years, male
74.7
GTEX-1HB9E-0011-R2b-SM-A96RW
50-59 years, male
72.3
GTEX-N7MS-0011-R2a-SM-2HML6
60-69 years, male
69.0
GTEX-1HT8W-0011-R2a-SM-CMKH9
30-39 years, male
68.0
GTEX-1313W-0011-R2a-SM-5EGLF
50-59 years, female
65.9
GTEX-1GN73-0011-R2a-SM-CJI2V
60-69 years, male
63.4
GTEX-13SLX-0011-R2b-SM-5S2VP
50-59 years, female
62.6
GTEX-1EMGI-0011-R2b-SM-9OSVS
60-69 years, male
62.0
GTEX-15ER7-0011-R2a-SM-6M46O
20-29 years, female
58.4
GTEX-T6MN-0011-R2A-SM-32QOW
50-59 years, male
58.0
GTEX-145LS-0011-R2a-SM-5PNZI
60-69 years, female
57.9
GTEX-1B8L1-0011-R2a-SM-9OSVL
60-69 years, male
57.8
GTEX-11GSP-0011-R2b-SM-9QEGE
60-69 years, female
57.4
GTEX-T5JC-0011-R2A-SM-32PLZ
20-29 years, male
56.6
GTEX-1399T-0011-R2b-SM-5DUXM
60-69 years, male
56.1
GTEX-15CHQ-0011-R2b-SM-6AJAD
60-69 years, male
54.2
GTEX-1B933-0011-R2b-SM-7IGNM
50-59 years, female
54.2
GTEX-WHSE-0011-R2A-SM-3P5ZL
20-29 years, male
53.7
GTEX-Z93S-0011-R2a-SM-4RGNG
50-59 years, male
53.4
GTEX-13N2G-0011-R2a-SM-5MR4Q
60-69 years, male
53.0
GTEX-1RLM8-0011-R2a-SM-EZ6N4
50-59 years, male
52.6
GTEX-1HFI6-0011-R2a-SM-CMKH5
40-49 years, male
52.1
GTEX-147GR-0011-R2b-SM-5S2RQ
60-69 years, male
51.4
GTEX-13G51-0011-R2b-SM-5LZXS
60-69 years, male
50.7
GTEX-1LH75-0011-R2b-SM-EYYWQ
50-59 years, female
50.5
GTEX-13FXS-0011-R2b-SM-5K7XX
50-59 years, male
50.2
GTEX-S7SE-0011-R2A-SM-2XCDC
50-59 years, male
49.4
GTEX-13OW8-0011-R2a-SM-5L3G2
60-69 years, male
49.2
GTEX-P44G-0011-R2A-SM-2XCD2
30-39 years, male
49.1
GTEX-XLM4-0011-R2B-SM-4AT5Z
60-69 years, male
48.9
GTEX-13SLW-0011-R2b-SM-5O9C6
70-79 years, male
48.6
GTEX-1A3MX-0011-R2b-SM-7EWFL
60-69 years, male
48.4
GTEX-15DYW-0011-R2b-SM-7KUKY
60-69 years, female
47.7
GTEX-1E1VI-0011-R2a-SM-9QEGS
50-59 years, male
47.7
GTEX-X585-0011-R2B-SM-46MVF
50-59 years, male
47.4
GTEX-17EVP-0011-R2a-SM-7LG4W
40-49 years, male
46.8
GTEX-13RTJ-0011-R2a-SM-5PNW9
60-69 years, male
46.7
GTEX-131XH-0011-R2b-SM-5DUVY
50-59 years, male
46.5
GTEX-Q2AG-0011-R2A-SM-2HMIT
40-49 years, female
46.5
GTEX-T2IS-0011-R2A-SM-32QPF
20-29 years, female
46.3
GTEX-ZAB4-0011-R2a-SM-4RGNP
40-49 years, male
45.7
GTEX-13NYS-0011-R2b-SM-5MR4G
60-69 years, male
45.6
GTEX-1445S-0011-R2b-SM-5PNUH
60-69 years, male
45.4
GTEX-1IKJJ-0011-R2b-SM-ARZLJ
60-69 years, male
45.4
GTEX-16Z82-0011-R2b-SM-79OK9
60-69 years, male
45.0
GTEX-11DZ1-0011-R2a-SM-DNZZM
50-59 years, male
45.0
GTEX-12ZZX-0011-R2a-SM-5EGLG
40-49 years, female
44.8
GTEX-12WSF-0011-R2a-SM-5DUVU
70-79 years, male
44.4
GTEX-1IY9M-0011-R2a-SM-D4P29
60-69 years, male
44.2
GTEX-13O3O-0011-R2b-SM-5P9H1
60-69 years, female
43.8
GTEX-12WSD-0011-R2a-SM-5LZWB
60-69 years, female
43.6
GTEX-1EKGG-0011-R2a-SM-CE6R8
60-69 years, male
43.6
GTEX-1H1ZS-0011-R2b-SM-CL54Q
70-79 years, male
43.4
GTEX-14C5O-0011-R2a-SM-5ZZV2
60-69 years, male
43.1
GTEX-X4XX-0011-R2A-SM-3P623
60-69 years, male
43.1
GTEX-NPJ7-0011-R2a-SM-2I3GF
60-69 years, female
42.9
GTEX-14BIN-0011-R2a-SM-5S2RJ
50-59 years, female
42.2
GTEX-13NYB-0011-R2a-SM-5MR3C
40-49 years, male
41.4
GTEX-1F6I4-0011-R2a-SM-CL536
60-69 years, male
40.8
GTEX-13X6K-0011-R2b-SM-5P9K3
60-69 years, female
40.1
GTEX-11GSO-0011-R2a-SM-57WDF
60-69 years, male
40.0
GTEX-XMD1-0011-R2B-SM-4AT5N
60-69 years, male
39.9
GTEX-14ASI-0011-R2b-SM-5YY9H
60-69 years, male
39.7
GTEX-14BIM-0011-R2b-SM-69LQ6
60-69 years, female
39.6
GTEX-14PN4-0011-R2a-SM-6EU2Y
50-59 years, male
39.5
GTEX-OXRO-0011-R2A-SM-3NB1W
60-69 years, female
39.5
GTEX-1CB4G-0011-R2a-SM-9QEGQ
60-69 years, male
39.5
GTEX-14JG1-0011-R2a-SM-5ZZVE
40-49 years, male
39.2
GTEX-15DCD-0011-R2b-SM-6LPIE
70-79 years, female
39.0
GTEX-QDT8-0011-R2A-SM-32PKQ
30-39 years, female
38.9
GTEX-11GS4-0011-R2a-SM-DO942
60-69 years, male
38.8
GTEX-1LSNL-0011-R2a-SM-EZ6MK
50-59 years, male
38.3
GTEX-18464-0011-R2a-SM-731AL
50-59 years, male
38.2
GTEX-13QJC-0011-R2b-SM-5PNUN
60-69 years, female
37.9
GTEX-1B996-0011-R2a-SM-7IGON
60-69 years, male
37.9
GTEX-1IL2U-0011-R2a-SM-ARU6V
60-69 years, male
37.3
GTEX-PWO3-0011-R2A-SM-2S1OX
60-69 years, female
37.0
GTEX-1F6IF-0011-R2b-SM-9QEHB
60-69 years, male
37.0
GTEX-1F48J-0011-R2a-SM-CL535
50-59 years, female
36.9
GTEX-1I1GS-0011-R2b-SM-CMKHG
60-69 years, male
36.5
GTEX-15RJE-0011-R2b-SM-79OMP
40-49 years, male
36.4
GTEX-1GMR8-0011-R2a-SM-CE6RD
50-59 years, female
36.4
GTEX-YFC4-0011-R2a-SM-4V6DZ
40-49 years, female
36.3
GTEX-14PJO-0011-R2a-SM-5ZZVF
60-69 years, male
36.2
GTEX-13X6I-0011-R2b-SM-5PNWQ
60-69 years, male
36.1
GTEX-1I1GV-0011-R2a-SM-ARZLF
60-69 years, male
36.1
GTEX-1HSMO-0011-R2a-SM-CL553
60-69 years, male
36.0
GTEX-ZE9C-0011-R2a-SM-4WKGH
60-69 years, male
35.4
GTEX-13OVJ-0011-R2b-SM-5L3GP
50-59 years, female
35.1
GTEX-N7MT-0011-R2a-SM-2I3GI
60-69 years, female
34.6
GTEX-1GTWX-0011-R2b-SM-ADEH5
60-69 years, male
34.4
GTEX-1GZ2Q-0011-R2b-SM-9OSWO
40-49 years, male
34.4
GTEX-NPJ8-0011-R2a-SM-2TC6M
40-49 years, male
34.0
GTEX-15EO6-0011-R2a-SM-6M46R
50-59 years, male
33.8
GTEX-ZV68-0011-R2a-SM-4YCDK
50-59 years, female
33.8
GTEX-R55E-0011-R2A-SM-EYYV9
20-29 years, male
33.7
GTEX-11PRG-0011-R2a-SM-69LQ5
50-59 years, male
33.5
GTEX-RU72-0011-R2A-SM-2TF6O
50-59 years, female
33.5
GTEX-ZDXO-0011-R2b-SM-4WKFG
60-69 years, male
33.5
GTEX-1H3VE-0011-R2a-SM-CE6SA
40-49 years, male
33.4
GTEX-1GN2E-0011-R2a-SM-9WG7D
60-69 years, male
33.3
GTEX-1H1DG-0011-R2a-SM-ADEIQ
70-79 years, male
33.3
GTEX-1H3O1-0011-R2b-SM-CKZOT
60-69 years, male
32.8
GTEX-13PDP-0011-R2b-SM-5O9DH
60-69 years, male
32.7
GTEX-1MA7X-0011-R2b-SM-EZ6MT
60-69 years, male
32.6
GTEX-QMR6-0011-R2A-SM-32PKV
50-59 years, male
32.5
GTEX-1LVAO-0011-R2a-SM-EYYX1
60-69 years, male
32.2
GTEX-132Q8-0011-R2b-SM-5EQ5Z
60-69 years, male
31.7
GTEX-1EU9M-0011-R2b-SM-9QEH7
60-69 years, male
31.7
GTEX-1IGQW-0011-R2b-SM-D4P26
60-69 years, male
31.7
GTEX-139TS-0011-R2b-SM-5J1MX
60-69 years, male
31.6
GTEX-NL4W-0011-R2a-SM-2I5GV
50-59 years, male
31.4
GTEX-1HR98-0011-R2a-SM-ARL7A
60-69 years, male
31.3
GTEX-11ZTS-0011-R2b-SM-5BC75
60-69 years, female
31.2
GTEX-1IKOH-0011-R2a-SM-CMKHO
60-69 years, female
31.2
GTEX-OHPN-0011-R2A-SM-2I5FB
60-69 years, female
31.0
GTEX-13CF2-0011-R2a-SM-5L3DC
60-69 years, male
30.9
GTEX-1J1OQ-0011-R2b-SM-ARU88
40-49 years, female
30.7
GTEX-1B8SG-0011-R2b-SM-79OOT
50-59 years, male
30.2
GTEX-17HG3-0011-R2a-SM-7MGVX
30-39 years, female
30.1
GTEX-11EMC-0011-R2b-SM-DO114
60-69 years, female
30.0
GTEX-1GN1U-0011-R2a-SM-CL53A
50-59 years, female
30.0
GTEX-1I1CD-0011-R2a-SM-CM2T3
60-69 years, female
29.7
GTEX-11WQC-0011-R2a-SM-DO927
60-69 years, male
29.6
GTEX-1F75B-0011-R2a-SM-ARL8I
50-59 years, male
29.6
GTEX-1LB8K-0011-R2a-SM-EZ6MQ
50-59 years, male
29.6
GTEX-UTHO-0011-R2A-SM-3GIKC
60-69 years, male
29.1
GTEX-1A8G7-0011-R2a-SM-7IGQI
60-69 years, male
28.9
GTEX-11UD1-0011-R2b-SM-5BC6O
40-49 years, female
27.6
GTEX-1H23P-0011-R2a-SM-CKZP3
60-69 years, male
27.6
GTEX-12WSA-0011-R2a-SM-57WDK
60-69 years, male
26.7
GTEX-1C6VR-0011-R2a-SM-7RHGZ
60-69 years, male
26.7
GTEX-1J8Q2-0011-R2b-SM-EAZ2X
60-69 years, male
26.5
GTEX-YJ89-0011-R2b-SM-4RGLT
60-69 years, male
24.3
GTEX-1JMQK-0011-R2a-SM-EYYXQ
60-69 years, male
24.3
GTEX-11TUW-0011-R2b-SM-DO92T
60-69 years, male
21.9
GTEX-12WSH-0011-R2a-SM-5GU68
50-59 years, male
20.7
GTEX-1LVA9-0011-R2a-SM-EZ6MJ
50-59 years, male
18.8
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MIDBRAIN - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
114.8
Mouse sample
Sample description
nTPM
Midbrain nTPM: 114.8
Samples: 4
Max nTPM: 119.9
Min nTPM: 108.3
Sample A
Male
116.8
Sample B
Male
108.3
Sample C
Female
114.2
Sample D
Female
119.9
MIDBRAIN - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.