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TISSUE PRIMARY DATA VAGINA Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
NASOPHARYNX ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Vagina
Tissue proteome
Vagina
Tissue methods
VAGINA - Expression summary
Protein expression
Vaginai

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Squamous epithelial cells: High
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:459.8 nTPM
GTEx:459.8 nTPM
FANTOM5:256.5 Scaled Tags Per Million

VAGINA - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells. Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Ascending and descending describe two types of gradient, based on difference in staining intensity between enterocytes in crypts and apical enterocytes.

Ascending - the staining intensity is stronger in apical enterocytes (towards the lumen) compared to enterocytes in the crypts (gland based)

Descending - the staining is weaker in apical enterocytes compared to enterocytes in crypts

Antibody CAB002490
Squamous epithelial cells High



VAGINA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

459.8
GTEx sample id Sample description nTPM
Vagina
Average nTPM: 459.8
Samples: 170

Max nTPM: 1229.1
Min nTPM: 108.7
Std nTPM: 217.4
Median nTPM: 428.4
GTEX-ZZPU-2226-SM-5EGIV 50-59 years, female 1229.1
GTEX-S341-1226-SM-4AD5S 40-49 years, female 1059.7
GTEX-1IDJU-1026-SM-AHZ2U 60-69 years, female 942.6
GTEX-15SDE-1726-SM-6LPJS 50-59 years, female 942.0
GTEX-11I78-2026-SM-5987C 50-59 years, female 940.9
GTEX-132AR-1626-SM-5EGHP 50-59 years, female 930.2
GTEX-1MCYP-1326-SM-EV7AD 20-29 years, female 883.3
GTEX-1JMQL-2326-SM-CNNPV 50-59 years, female 849.5
GTEX-16NGA-1626-SM-72D6M 40-49 years, female 836.5
GTEX-11VI4-0726-SM-5GU5B 40-49 years, female 827.7
GTEX-U3ZN-0926-SM-4DXTU 30-39 years, female 815.7
GTEX-1LVAN-1626-SM-CNPQ7 50-59 years, female 811.9
GTEX-S7SF-1426-SM-4AT5A 20-29 years, female 804.4
GTEX-Y3IK-2226-SM-4YCD4 50-59 years, female 797.1
GTEX-1LVAM-1926-SM-E6CIM 50-59 years, female 788.6
GTEX-14PN3-1626-SM-6AJAV 60-69 years, female 778.4
GTEX-ZXES-0626-SM-5E45P 30-39 years, female 776.0
GTEX-OHPK-2526-SM-3MJH9 50-59 years, female 775.6
GTEX-ZLWG-1126-SM-4WWFQ 50-59 years, female 756.7
GTEX-14H4A-2426-SM-664OQ 40-49 years, female 724.8
GTEX-1QP28-1426-SM-EVR4E 50-59 years, female 721.4
GTEX-N7MT-1926-SM-3LK5N 60-69 years, female 719.7
GTEX-1JN76-1526-SM-CNPPF 20-29 years, female 714.3
GTEX-1NUQO-1826-SM-E6CQU 20-29 years, female 691.5
GTEX-ZAJG-2926-SM-5HL8P 50-59 years, female 690.2
GTEX-ZC5H-2226-SM-4WAWS 40-49 years, female 689.8
GTEX-SE5C-1126-SM-4BRWZ 40-49 years, female 689.5
GTEX-11P81-2126-SM-5HL6N 30-39 years, female 676.4
GTEX-1AMFI-1526-SM-73KVY 50-59 years, female 675.8
GTEX-14PKU-1326-SM-6871B 40-49 years, female 674.7
GTEX-1399S-2326-SM-5K7YV 30-39 years, female 668.7
GTEX-18A7A-2826-SM-7LT8J 50-59 years, female 665.3
GTEX-14AS3-1726-SM-5RQJV 40-49 years, female 663.5
GTEX-15SB6-1426-SM-7KUEM 50-59 years, female 647.9
GTEX-131XG-2126-SM-5DUXG 50-59 years, female 644.5
GTEX-13QBU-1726-SM-5IJFQ 40-49 years, female 640.6
GTEX-1GN1W-1526-SM-7P8TG 50-59 years, female 639.1
GTEX-1117F-2526-SM-5GZY6 60-69 years, female 635.2
GTEX-ZVT2-0626-SM-5GICR 50-59 years, female 625.8
GTEX-ZP4G-0826-SM-4WWF3 20-29 years, female 619.5
GTEX-XYKS-2826-SM-H7OG8 60-69 years, female 618.0
GTEX-QVJO-2526-SM-CYPRA 60-69 years, female 616.3
GTEX-1GF9U-1926-SM-7P8TZ 40-49 years, female 613.7
GTEX-1HBPH-2926-SM-9WPNX 40-49 years, female 604.4
GTEX-11XUK-1326-SM-5EQM4 40-49 years, female 599.6
GTEX-S4UY-1026-SM-4AD53 40-49 years, female 598.8
GTEX-T6MO-1226-SM-4DM5S 40-49 years, female 594.6
GTEX-1MA7W-1226-SM-HL9SB 20-29 years, female 593.9
GTEX-1LKK1-1826-SM-GNIPA 50-59 years, female 590.1
GTEX-1LGOU-1126-SM-D3LAI 20-29 years, female 576.4
GTEX-18D9A-1026-SM-7KFRU 30-39 years, female 572.1
GTEX-1J1OQ-1826-SM-CL53R 40-49 years, female 571.0
GTEX-ZTPG-2226-SM-57WF9 20-29 years, female 565.1
GTEX-1399U-1526-SM-5J2N7 50-59 years, female 563.3
GTEX-1C475-0526-SM-793AC 40-49 years, female 559.8
GTEX-14PJ6-1626-SM-6872D 60-69 years, female 558.6
GTEX-1HBPM-2726-SM-9WYUA 60-69 years, female 541.2
GTEX-QCQG-1226-SM-48U23 50-59 years, female 535.5
GTEX-X8HC-2826-SM-46MWJ 50-59 years, female 534.2
GTEX-17F9Y-2326-SM-7DUFP 70-79 years, female 532.2
GTEX-1F5PL-1826-SM-7P8PP 40-49 years, female 522.0
GTEX-ZYY3-2626-SM-5N9DH 60-69 years, female 521.6
GTEX-TML8-1126-SM-4DXSS 40-49 years, female 514.6
GTEX-139D8-2626-SM-GJ3QN 30-39 years, female 514.1
GTEX-14BMU-1926-SM-5S2QC 20-29 years, female 511.2
GTEX-13PL7-2726-SM-5L3GB 60-69 years, female 510.6
GTEX-11TTK-2726-SM-5GU58 60-69 years, female 510.4
GTEX-PWCY-1726-SM-48TD3 20-29 years, female 507.6
GTEX-11EMC-1926-SM-5A5JU 60-69 years, female 503.0
GTEX-Q734-1426-SM-DTXFX 40-49 years, female 500.5
GTEX-PWN1-2526-SM-48TDS 40-49 years, female 500.1
GTEX-W5X1-2226-SM-GRR1G 40-49 years, female 499.5
GTEX-S4P3-1126-SM-4AD52 50-59 years, female 495.1
GTEX-14JG6-0726-SM-69LQH 30-39 years, female 476.6
GTEX-15SHU-2926-SM-7KUKT 40-49 years, female 474.9
GTEX-1R9JW-1426-SM-DTX9K 30-39 years, female 473.9
GTEX-WYVS-1426-SM-4ONCV 40-49 years, female 468.6
GTEX-113JC-1926-SM-5N9GE 50-59 years, female 460.3
GTEX-ZGAY-2226-SM-4YCCX 40-49 years, female 455.5
GTEX-P78B-2226-SM-3P5ZZ 40-49 years, female 454.4
GTEX-16MT8-2426-SM-GQ1DK 60-69 years, female 453.4
GTEX-145ME-1426-SM-5RQJS 40-49 years, female 442.1
GTEX-1J8EW-2526-SM-CKZO2 60-69 years, female 440.3
GTEX-1HCU6-2326-SM-ACKXP 60-69 years, female 434.6
GTEX-XUW1-0326-SM-4BOOR 50-59 years, female 429.1
GTEX-1CAMS-2326-SM-793CR 40-49 years, female 427.6
GTEX-1HCUA-1026-SM-A9SMI 50-59 years, female 424.1
GTEX-15ER7-2526-SM-7KUFW 20-29 years, female 418.2
GTEX-YJ8O-1226-SM-5P9JE 40-49 years, female 416.6
GTEX-TMMY-1926-SM-4DXUU 40-49 years, female 414.6
GTEX-13D11-1326-SM-5IJFY 50-59 years, female 411.3
GTEX-146FR-2426-SM-5NQAU 60-69 years, female 402.7
GTEX-ZE7O-2426-SM-57WD7 50-59 years, female 401.1
GTEX-X15G-1926-SM-4PQZQ 50-59 years, female 400.9
GTEX-11DXX-1726-SM-5H11T 60-69 years, female 399.2
GTEX-13U4I-2026-SM-5LU3L 40-49 years, female 385.6
GTEX-PX3G-2526-SM-48TZV 20-29 years, female 379.7
GTEX-1MCC2-1126-SM-EVYD6 30-39 years, female 372.5
GTEX-1LNCM-1026-SM-E9U5D 50-59 years, female 369.6
GTEX-146FH-2626-SM-5Q5E1 50-59 years, female 369.5
GTEX-ZYVF-0326-SM-5GIES 50-59 years, female 363.5
GTEX-1LH75-1726-SM-DHXKZ 50-59 years, female 359.8
GTEX-1GMR8-2526-SM-7RHI9 50-59 years, female 359.3
GTEX-1ICG6-1626-SM-ARL81 70-79 years, female 359.0
GTEX-1A8FM-2426-SM-7IGPE 50-59 years, female 358.9
GTEX-13PVR-1426-SM-5S2PW 60-69 years, female 357.1
GTEX-13FTY-2026-SM-GIN9K 40-49 years, female 355.4
GTEX-T2IS-1926-SM-4DM74 20-29 years, female 350.3
GTEX-OXRK-2026-SM-GOQY5 50-59 years, female 345.0
GTEX-1GN1U-2426-SM-9KNTU 50-59 years, female 337.3
GTEX-ZVZQ-2726-SM-GPRY1 60-69 years, female 333.9
GTEX-12WSD-2926-SM-5LZUH 60-69 years, female 333.3
GTEX-147F3-1526-SM-5MR7L 50-59 years, female 327.9
GTEX-RWS6-1726-SM-47JXP 60-69 years, female 322.1
GTEX-RU1J-1426-SM-46MUV 20-29 years, female 321.6
GTEX-P4PP-2526-SM-3P61P 30-39 years, female 316.9
GTEX-14A5I-2726-SM-5MR84 50-59 years, female 315.5
GTEX-12ZZX-1926-SM-5EGKC 40-49 years, female 313.2
GTEX-UJHI-1326-SM-4IHJO 50-59 years, female 307.9
GTEX-XUZC-1226-SM-4BRVJ 30-39 years, female 306.4
GTEX-RNOR-2526-SM-F21KT 50-59 years, female 302.9
GTEX-1IE54-2626-SM-CMKFY 40-49 years, female 301.1
GTEX-WEY5-0826-SM-4LMIH 40-49 years, female 299.7
GTEX-11EM3-1826-SM-5A5KO 20-29 years, female 293.6
GTEX-16NPV-2526-SM-6M483 50-59 years, female 292.3
GTEX-ZQG8-1126-SM-51MRL 60-69 years, female 291.6
GTEX-PLZ4-2726-SM-3P61A 50-59 years, female 285.7
GTEX-WRHU-2926-SM-4MVNQ 50-59 years, female 284.5
GTEX-1QCLZ-2226-SM-DTX7R 60-69 years, female 280.4
GTEX-W5WG-1026-SM-4LMIF 50-59 years, female 270.3
GTEX-15DYW-2926-SM-6PANA 60-69 years, female 269.9
GTEX-YFC4-2926-SM-5IFJ8 40-49 years, female 262.9
GTEX-11GSP-2226-SM-5HL5Q 60-69 years, female 262.6
GTEX-1S5ZU-2626-SM-E9TII 20-29 years, female 260.4
GTEX-NPJ7-2526-SM-EV79A 60-69 years, female 258.5
GTEX-1I1GT-1226-SM-B2LVK 60-69 years, female 254.7
GTEX-14PJM-2926-SM-69LOE 50-59 years, female 252.7
GTEX-1PIEJ-1926-SM-EVYB7 20-29 years, female 252.7
GTEX-QDT8-2526-SM-48TYX 30-39 years, female 245.1
GTEX-SN8G-2626-SM-EXUQT 50-59 years, female 239.7
GTEX-RTLS-2126-SM-GPRWH 60-69 years, female 239.6
GTEX-XV7Q-1626-SM-4BRWC 40-49 years, female 239.6
GTEX-13OVI-0926-SM-5J1MI 60-69 years, female 225.5
GTEX-12WSJ-1326-SM-5GCOB 40-49 years, female 224.7
GTEX-13W3W-2326-SM-5LU4Y 60-69 years, female 218.9
GTEX-ZV6S-1326-SM-59HJA 40-49 years, female 218.3
GTEX-OHPL-2526-SM-3MJGT 60-69 years, female 215.8
GTEX-14DAQ-2326-SM-5S2QX 60-69 years, female 215.5
GTEX-WI4N-2626-SM-GPI8F 40-49 years, female 214.9
GTEX-13QIC-1826-SM-5J1MY 60-69 years, female 213.2
GTEX-131YS-2426-SM-5J2OD 60-69 years, female 212.2
GTEX-1I4MK-1726-SM-ARL7O 50-59 years, female 212.1
GTEX-1HFI7-1126-SM-A96S5 50-59 years, female 199.7
GTEX-1QPFJ-1626-SM-DTX7X 30-39 years, female 196.1
GTEX-OHPN-2426-SM-E9TI5 60-69 years, female 189.3
GTEX-ZVT3-2726-SM-5GU5X 60-69 years, female 188.5
GTEX-TSE9-2526-SM-4DXUS 60-69 years, female 184.3
GTEX-O5YV-2226-SM-HM8V7 60-69 years, female 183.4
GTEX-ZAK1-2426-SM-EXOHM 50-59 years, female 180.3
GTEX-15UF6-2126-SM-6M46Z 70-79 years, female 180.2
GTEX-145LS-2526-SM-5TDC9 60-69 years, female 178.9
GTEX-17JCI-2526-SM-7DHLB 60-69 years, female 169.8
GTEX-1EWIQ-2326-SM-7IGNF 70-79 years, female 168.4
GTEX-WYBS-2826-SM-GOQYI 60-69 years, female 161.5
GTEX-1LGRB-2126-SM-COH48 50-59 years, female 160.4
GTEX-183WM-2126-SM-7LG4I 70-79 years, female 155.3
GTEX-13N11-1526-SM-5L3FL 50-59 years, female 153.0
GTEX-1F48J-2526-SM-7P8TU 50-59 years, female 145.2
GTEX-R45C-2226-SM-GQ1EF 60-69 years, female 143.9
GTEX-1JN1M-2326-SM-ARZNG 60-69 years, female 108.7
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VAGINA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

256.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Vagina
Scaled Tags Per Million: 256.5
FF:10204-103F6 68 years, female 256.5

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