We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
RPS20
HPA
RESOURCES
  • TISSUE
  • BRAIN
  • SINGLE CELL
  • SUBCELLULAR
  • CANCER
  • BLOOD
  • CELL LINE
  • STRUCTURE
  • INTERACTION
ABOUT
  • INTRODUCTION
  • HISTORY
  • ORGANIZATION
  • PUBLICATIONS
  • ACKNOWLEDGMENTS
  • CONTACT
NEWS
  • NEWS ARTICLES
  • PRESS ROOM
LEARN
  • DICTIONARY
  • PROTEIN CLASSES
  • PROTEIN EVIDENCE
  • METHODS
  • EDUCATIONAL VIDEOS
DATA
  • DOWNLOADABLE DATA
  • PUBLICATION DATA
  • RELEASE HISTORY
HELP
  • HELP & FAQ
  • ANTIBODY AVAILABILITY
  • DISCLAIMER
  • PRIVACY STATEMENT
  • LICENCE & CITATION
Fields »
Search result

Field
Term
Gene name
Class
Subclass
Category
Keyword
Chromosome
External id
Tissue
Cell type
Expression
Antibody panel
Tissue
Main location
Patient ID
Annotation
Tissue
Category
Tau score
Cluster
Reliability
Brain region
Category
Tau score
Brain region
Category
Tau score
Brain region
Category
Tau score
Cluster
Reliability
Tissue
Cell type
Enrichment
Cell type
Category
Tau score
Cell type group
Category
Tau score
Cell type
Category
Tau score
Cell type
Category
Tau score
Cell lineage
Category
Tau score
Cluster
Cluster
Location
Searches
Location
Cell line
Class
Type
Phase
Reliability
Cancer
Prognosis
Cancer
Category
Cancer
Category
Tau score
Cluster
Variants
Interacting gene (ensg_id)
Type
Number of interactions
Pathway
ipTM
Category
Category
Category
Category
Validation
Validation
Validation
Validation
Antibodies
Data type
Column


  • SUMMARY

  • TISSUE

  • BRAIN

  • SINGLE CELL

  • SUBCELL

  • CANCER

  • BLOOD

  • CELL LINE

  • STRUCTURE

  • INTERACTION

  • RPS20
TISSUE PRIMARY DATA KIDNEY Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
NASOPHARYNX ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Kidney
Tissue proteome
Kidney
Tissue methods
KIDNEY - Expression summary
Protein expression
Kidneyi

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Cells in glomeruli: Not detected
Cells in tubules: Low
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:2169.1 nTPM
HPA:1021.8 nTPM
GTEx:2169.1 nTPM
FANTOM5:613.7 Scaled Tags Per Million
KIDNEY - SINGLE CELL RNA EXPRESSION
Explore single cell type data

KIDNEY - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells. Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Ascending and descending describe two types of gradient, based on difference in staining intensity between enterocytes in crypts and apical enterocytes.

Ascending - the staining intensity is stronger in apical enterocytes (towards the lumen) compared to enterocytes in the crypts (gland based)

Descending - the staining is weaker in apical enterocytes compared to enterocytes in crypts

Antibody HPA003570
Cells in glomeruli Not detected
Cells in tubules Low



KIDNEY - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.

Average nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

1021.8
overview
Female, age 58
Kidney sample 55
nTPM: 1012.1
Cell types%
Cells in tubules:
60

Cells in glomeruli:
20

Fibroblasts:
5

Other cell types:
15

overview
Female, age 67
Kidney sample 56
nTPM: 1185.1
Cell types%
Cells in tubules:
70

Cells in glomeruli:
15

Fibroblasts:
10

Other cell types:
5

overview
Female, age 55
Kidney sample 57
nTPM: 824.7
Cell types%
Cells in tubules:
80

Cells in glomeruli:
10

Fibroblasts:
5

Other cell types:
5

overview
Male, age 46
Kidney sample 58
nTPM: 1177.8
Cell types%
Cells in tubules:
60

Cells in glomeruli:
25

Fibroblasts:
5

Other cell types:
10

overview
Female, age 57
Kidney sample 358
nTPM: 988.4
Cell types%
Cells in tubules:
60

Cells in glomeruli:
10

Fibroblasts:
10

Other cell types:
20

overview
Male, age 78
Kidney sample 377
nTPM: 869.6
Cell types%
Cells in tubules:
65

Cells in glomeruli:
10

Fibroblasts:
5

Other cell types:
20

overview
Male, age 73
Kidney sample 380
nTPM: 1716.4
Cell types%
Cells in tubules:
60

Cells in glomeruli:
10

Fibroblasts:
10

Other cell types:
20

overview
Female, age 59
Kidney sample 394
nTPM: 599.3
Cell types%
Cells in tubules:
65

Cells in glomeruli:
10

Fibroblasts:
10

Other cell types:
15

overview
Female, age 48
Kidney sample 414
nTPM: 823.2
Cell types%
Cells in tubules:
60

Cells in glomeruli:
5

Fibroblasts:
10

Other cell types:
25


KIDNEY - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

2169.1
GTEx sample id Sample description nTPM
Kidney - Cortex
Average nTPM: 1872.5
Samples: 104

Max nTPM: 3800.9
Min nTPM: 970.2
Std nTPM: 584.0
Median nTPM: 1741.8
GTEX-11TTK-1926-SM-5PNW8 60-69 years, female 3800.9
GTEX-1O9I2-1926-SM-F2TBQ 50-59 years, male 3384.7
GTEX-15DCD-1926-SM-HAV33 70-79 years, female 3356.6
GTEX-1PWST-2226-SM-EVR3G 70-79 years, male 3252.1
GTEX-13NYB-1726-SM-5N9G2 40-49 years, male 3146.3
GTEX-WL46-1926-SM-GNIN6 50-59 years, male 3110.9
GTEX-14E6D-2526-SM-5YYA9 50-59 years, male 2956.3
GTEX-1JMPZ-1226-SM-ARU8Y 30-39 years, male 2948.0
GTEX-1JJE9-1026-SM-HL9TH 70-79 years, male 2909.5
GTEX-1CB4J-1926-SM-7MGX8 60-69 years, male 2771.3
GTEX-T6MN-1826-SM-EXOHN 50-59 years, male 2746.2
GTEX-1JMQJ-1726-SM-E9U4V 50-59 years, male 2690.6
GTEX-11OF3-1326-SM-5N9FJ 60-69 years, male 2514.6
GTEX-1N2DW-1826-SM-EAZ54 50-59 years, male 2492.9
GTEX-ZYT6-2226-SM-5GIC9 30-39 years, male 2454.3
GTEX-1QP6S-1526-SM-EXUSG 40-49 years, male 2451.3
GTEX-14C5O-2026-SM-5YYB1 60-69 years, male 2445.2
GTEX-17F97-1926-SM-7IGM4 50-59 years, male 2378.8
GTEX-15CHQ-2126-SM-6871M 60-69 years, male 2358.5
GTEX-1C6VQ-2326-SM-7IGN1 50-59 years, male 2356.3
GTEX-1117F-2126-SM-GIN9G 60-69 years, female 2354.8
GTEX-1NV8Z-2226-SM-EXOJ2 60-69 years, male 2288.1
GTEX-1LH75-1326-SM-F2I1R 50-59 years, female 2278.8
GTEX-ZDXO-0226-SM-4WKH7 60-69 years, male 2257.2
GTEX-17HHY-2326-SM-7KFSR 50-59 years, male 2236.1
GTEX-1JMQK-1926-SM-CJI3B 60-69 years, male 2183.9
GTEX-T5JC-1526-SM-4DM68 20-29 years, male 2166.1
GTEX-1GTWX-1826-SM-9QEHG 60-69 years, male 2148.2
GTEX-1J1OQ-1426-SM-AHZ3P 40-49 years, female 2142.0
GTEX-13OVL-1826-SM-5KLZR 50-59 years, male 2090.4
GTEX-16XZY-1026-SM-HAV39 70-79 years, male 2080.9
GTEX-13RTJ-2226-SM-5S2Q1 60-69 years, male 2071.7
GTEX-1399S-0526-SM-5IJG8 30-39 years, female 2043.7
GTEX-1RQEC-2426-SM-F2I1J 60-69 years, male 2040.1
GTEX-1QAET-2126-SM-F2TBS 50-59 years, male 2029.1
GTEX-13FHP-2126-SM-GIN8J 50-59 years, male 2016.6
GTEX-1KWVE-0826-SM-CXZKO 30-39 years, male 1989.5
GTEX-13112-2126-SM-5GCO4 50-59 years, male 1971.0
GTEX-1R9PO-1626-SM-E6CPT 60-69 years, female 1969.4
GTEX-16XZZ-2226-SM-HAV34 60-69 years, male 1951.9
GTEX-QDT8-1726-SM-EYYV6 30-39 years, female 1940.9
GTEX-13O1R-2526-SM-5N9FW 60-69 years, male 1915.9
GTEX-ZLFU-0926-SM-5P9F8 40-49 years, male 1899.4
GTEX-1GN1U-2126-SM-AHZ4J 50-59 years, female 1894.4
GTEX-1HB9E-1826-SM-D4P33 50-59 years, male 1866.0
GTEX-1ICLY-2026-SM-GA913 50-59 years, male 1835.5
GTEX-13OW6-1826-SM-5N9F9 50-59 years, male 1795.4
GTEX-14PJ2-1826-SM-HL9UB 50-59 years, male 1791.9
GTEX-1BAJH-1826-SM-731DA 70-79 years, male 1770.3
GTEX-1F48J-2226-SM-7MXTN 50-59 years, female 1769.4
GTEX-1GF9V-1926-SM-9JGHE 60-69 years, male 1755.2
GTEX-1HCVE-2126-SM-HL9UO 50-59 years, male 1751.2
GTEX-14JG1-2326-SM-HAUZ5 40-49 years, male 1732.5
GTEX-ZE9C-1426-SM-4WKGM 60-69 years, male 1714.9
GTEX-1GF9W-1326-SM-7P8PX 60-69 years, male 1703.3
GTEX-1IL2V-1826-SM-ARU7R 70-79 years, male 1699.3
GTEX-13OVI-1126-SM-5KLZF 60-69 years, female 1662.2
GTEX-ZXG5-2026-SM-HAUZV 60-69 years, male 1640.2
GTEX-REY6-1826-SM-EAZAT 60-69 years, male 1630.2
GTEX-1I1GP-1926-SM-CNNQU 50-59 years, male 1626.7
GTEX-15DYW-2026-SM-6AJBD 60-69 years, female 1622.6
GTEX-147F4-2626-SM-5Q5CS 50-59 years, male 1620.5
GTEX-1A3MW-2226-SM-73KUX 60-69 years, female 1620.3
GTEX-1N2EF-1426-SM-EXUSH 60-69 years, male 1614.4
GTEX-1E2YA-1626-SM-7MGXS 50-59 years, male 1610.4
GTEX-17F96-1926-SM-7MGWY 70-79 years, male 1575.0
GTEX-16Z82-2826-SM-HAUZZ 60-69 years, male 1572.6
GTEX-QDVN-1726-SM-HL9TO 50-59 years, male 1567.8
GTEX-W5X1-1626-SM-H7OGO 40-49 years, female 1533.5
GTEX-1OJC4-2326-SM-DTXA5 50-59 years, female 1514.6
GTEX-1LG7Y-2726-SM-D5OVW 50-59 years, male 1509.4
GTEX-12696-0926-SM-5FQTV 60-69 years, male 1505.5
GTEX-14C39-2126-SM-664OH 40-49 years, male 1502.5
GTEX-1HBPI-2026-SM-CE6RZ 50-59 years, male 1477.4
GTEX-16MT8-1926-SM-7EPGL 60-69 years, female 1476.5
GTEX-1H3NZ-2126-SM-9WPQ6 60-69 years, male 1475.4
GTEX-145MN-0326-SM-5QGQI 30-39 years, male 1458.2
GTEX-O5YV-1226-SM-EV795 60-69 years, female 1454.5
GTEX-1EKGG-2226-SM-7IGOA 60-69 years, male 1448.3
GTEX-RN64-1626-SM-48FD7 50-59 years, male 1441.3
GTEX-1MUQO-2526-SM-E9TJN 60-69 years, male 1439.8
GTEX-Y5V5-1226-SM-EYYVP 60-69 years, female 1437.0
GTEX-13O3O-1726-SM-GJ3RL 60-69 years, female 1400.6
GTEX-1H3VY-1926-SM-9JGHJ 50-59 years, male 1376.0
GTEX-ZVZP-0926-SM-5GIDB 50-59 years, male 1369.0
GTEX-S33H-1426-SM-EZ6L7 30-39 years, male 1330.7
GTEX-1A8FM-2026-SM-7P8RN 50-59 years, female 1330.5
GTEX-1JJ6O-2526-SM-AHZ3J 60-69 years, male 1283.4
GTEX-QLQW-1626-SM-CMKFE 30-39 years, male 1282.0
GTEX-1HCU7-1826-SM-A9G2A 50-59 years, male 1280.3
GTEX-ZC5H-1726-SM-5HL7X 40-49 years, female 1264.5
GTEX-1IKK5-0926-SM-A9G2U 60-69 years, male 1256.9
GTEX-ZYFG-1626-SM-5GZYY 60-69 years, female 1228.9
GTEX-1K9T9-1826-SM-CXZK2 50-59 years, female 1222.5
GTEX-11GS4-2326-SM-5A5KS 60-69 years, male 1217.6
GTEX-P4QS-1126-SM-3NMD5 60-69 years, male 1214.7
GTEX-XPVG-0526-SM-4B65N 50-59 years, male 1211.2
GTEX-Y5V6-2026-SM-5IFHO 60-69 years, male 1210.9
GTEX-1AX8Z-2326-SM-731CR 60-69 years, male 1199.2
GTEX-1GMR3-2426-SM-7MXV2 40-49 years, male 1183.3
GTEX-NFK9-1826-SM-HL9T3 40-49 years, male 1146.5
GTEX-1JMLX-1526-SM-AHZ3N 50-59 years, male 1076.1
GTEX-1497J-0826-SM-5NQAJ 60-69 years, male 977.1
GTEX-12WSG-0826-SM-5EQ5A 50-59 years, female 970.2
Show allShow less
Kidney - Medulla
Average nTPM: 2169.1
Samples: 11

Max nTPM: 5498.0
Min nTPM: 1048.3
Std nTPM: 1291.1
Median nTPM: 1854.4
GTEX-N7MS-1526-SM-HAUZP 60-69 years, male 5498.0
GTEX-QEG5-2026-SM-H6Q6I 20-29 years, male 3850.3
GTEX-RU72-1926-SM-EAZ3F 50-59 years, female 2335.7
GTEX-SIU8-1926-SM-H7OG4 50-59 years, male 2024.9
GTEX-T5JC-1626-SM-EZ6KW 20-29 years, male 1965.0
GTEX-T6MN-1926-SM-GOQYD 50-59 years, male 1854.4
GTEX-QEG4-1526-SM-GPRWK 30-39 years, male 1514.0
GTEX-R55E-2026-SM-EZ6L1 20-29 years, male 1450.0
GTEX-P4QS-1226-SM-HPAG8 60-69 years, male 1197.7
GTEX-TKQ2-0626-SM-EZ6LB 50-59 years, male 1122.1
GTEX-S33H-1526-SM-GQ1CB 30-39 years, male 1048.3
Show allShow less

KIDNEY - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

613.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Kidney
Scaled Tags Per Million: 613.7
FF:10017-101C8 60,62,63 years, female 613.7

Contact

  • NEWS ARTICLES
  • PRESS ROOM

The Project

  • INTRODUCTION
  • ORGANIZATION
  • PUBLICATIONS

The Human Protein Atlas

  • DOWNLOADABLE DATA
  • LICENCE & CITATION
  • HELP & FAQ
KAW logo The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.

Facebook logo X logo Bluesky logo Linkedin logo RSS feed logo contact@proteinatlas.org
GCBR logo Elixir core logo SciLifeLab logo Uppsala university logo KI logo KTH logo