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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
HPA Brain:
44.2
nTPM
FANTOM5:
44.0
Scaled Tags Per Million
Pig:
10.7
nTPM
Allen mouse:
1.2
Expression energy
PONS - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
44.2
Sample id
Sample description
nTPM
Anterior cochlear nucleus, ventral nTPM: 37.2
2188
Female, age 91, both hemispheres
40.6
2301
Female, age 85, both hemispheres
36.8
2090
Male, age 80, both hemispheres
36.4
1984
Male, age 76, both hemispheres
35.0
Dorsal cochlear nucleus nTPM: 34.1
2187
Female, age 91, both hemispheres
40.0
2378
Male, age 80, both hemispheres
36.5
2058
Male, age 76, both hemispheres
33.0
2802
Male, age 74, right hemisphere
30.8
2370
Male, age 61, both hemispheres
30.3
Dorsal tegmental nucleus nTPM: 35.4
2083
Male, age 80, both hemispheres
39.4
1936
Male, age 76, left hemisphere
38.0
2326
Male, age 74, both hemispheres
34.1
2358
Male, age 61, both hemispheres
30.0
Dorsolateral tegmental area nTPM: 42.9
2360
Male, age 74, both hemispheres
47.2
2337
Male, age 61, both hemispheres
45.1
2654
Male, age 80, both hemispheres
44.3
2751
Female, age 85, both hemispheres
40.0
2141
Male, age 76, both hemispheres
38.0
Kolliker-Fuse nucleus nTPM: 40.3
2163
Male, age 80, both hemispheres
45.0
2315
Male, age 76, right hemisphere
40.3
2793
Female, age 91, left hemisphere
35.6
Lateral lemniscal nuclei nTPM: 38.4
2746
Female, age 85, left hemisphere
43.5
2169
Male, age 76, both hemispheres
43.1
2320
Female, age 91, left hemisphere
37.1
2036
Male, age 80, both hemispheres
34.9
2453
Male, age 74, right hemisphere
33.3
Lateral parabrachial nucleus nTPM: 38.4
2139
Female, age 85, right hemisphere
44.6
2013
Male, age 80, both hemispheres
39.0
2790
Male, age 61, both hemispheres
35.5
2792
Male, age 76, both hemispheres
34.7
Lateral vestibular nucleus nTPM: 40.5
2184
Male, age 76, both hemispheres
40.8
2311
Male, age 80, both hemispheres
40.2
Locus coeruleus nTPM: 44.2
2014
Male, age 55, unknown
52.0
2788
Male, age 74, unknown
50.8
2123
Female, age 91, both hemispheres
45.9
1980
Male, age 76, both hemispheres
43.2
2317
Female, age 72, unknown
41.8
2720
Male, age 74, both hemispheres
38.9
2162
Male, age 80, both hemispheres
36.9
Medial parabrachial nucleus nTPM: 41.6
2170
Female, age 91, both hemispheres
49.3
2156
Male, age 61, both hemispheres
42.3
2854
Male, age 80, both hemispheres
40.0
2786
Male, age 76, both hemispheres
39.1
2463
Female, age 85, right hemisphere
37.3
Medial periolivary nuclei nTPM: 41.9
2063
Male, age 76, both hemispheres
48.7
2791
Male, age 74, right hemisphere
46.6
2171
Female, age 85, both hemispheres
42.4
2081
Male, age 80, both hemispheres
36.2
2458
Female, age 91, both hemispheres
35.5
Motor facial nucleus nTPM: 36.7
2062
Male, age 76, both hemispheres
50.1
2365
Male, age 74, right hemisphere
43.1
2697
Female, age 85, both hemispheres
36.5
2795
Female, age 91, both hemispheres
31.4
2126
Male, age 61, both hemispheres
30.5
2327
Male, age 80, both hemispheres
28.9
Motor trigeminal nucleus nTPM: 36.6
2309
Male, age 76, both hemispheres
44.1
2560
Male, age 74, both hemispheres
38.4
2321
Female, age 91, both hemispheres
34.6
2335
Male, age 61, both hemispheres
34.6
2079
Male, age 80, both hemispheres
31.2
Nuclei of the trapezoid body nTPM: 42.2
1983
Male, age 76, both hemispheres
48.8
2735
Female, age 85, both hemispheres
47.3
2159
Male, age 61, both hemispheres
42.0
2166
Male, age 80, both hemispheres
38.2
2368
Female, age 91, both hemispheres
34.5
Nucleus raphe magnus nTPM: 39.2
2172
Female, age 85, both hemispheres
44.9
2051
Male, age 76, both hemispheres
44.7
2160
Male, age 61, both hemispheres
40.9
2455
Male, age 74, both hemispheres
40.2
2328
Male, age 80, both hemispheres
33.4
2459
Female, age 91, both hemispheres
31.2
Paramedian reticular nucleus nTPM: 43.2
2057
Male, age 80, both hemispheres
45.6
2052
Male, age 76, both hemispheres
45.5
2050
Female, age 85, both hemispheres
42.2
2313
Male, age 61, both hemispheres
39.4
Pedunculopontine tegmental nucleus nTPM: 42.4
2338
Male, age 61, both hemispheres
42.6
2334
Male, age 80, both hemispheres
42.5
1921
Female, age 85, both hemispheres
42.1
Pontine nuclei nTPM: 43.1
2454
Male, age 74, left hemisphere
49.4
2787
Female, age 85, both hemispheres
48.2
1968
Male, age 76, left hemisphere
45.1
1863
Male, age 55, unknown
44.6
2109
Female, age 72, unknown
43.3
2115
Male, age 80, left hemisphere
38.8
2727
Male, age 61, right hemisphere
38.7
2319
Female, age 91, both hemispheres
36.5
Pontine raphe nucleus nTPM: 39.1
2853
Male, age 76, midline
40.4
2122
Female, age 85, midline
37.7
Posteroventral cochlear nucleus nTPM: 38.2
2341
Male, age 80, both hemispheres
43.1
2135
Female, age 91, both hemispheres
40.2
2752
Female, age 85, both hemispheres
39.2
2070
Male, age 76, both hemispheres
36.6
2371
Male, age 61, both hemispheres
32.1
Principal sensory trigeminal nucleus nTPM: 38.4
2158
Male, age 61, both hemispheres
40.6
2324
Male, age 76, both hemispheres
40.6
2008
Male, age 80, left hemisphere
37.6
2367
Female, age 91, left hemisphere
34.7
Reticular pontine nucleus, caudal nTPM: 37.0
2559
Male, age 74, both hemispheres
45.1
2092
Male, age 76, both hemispheres
40.3
2457
Female, age 91, both hemispheres
31.9
2332
Male, age 80, right hemisphere
30.7
Reticular pontine nucleus, oral nTPM: 43.7
2361
Male, age 74, both hemispheres
58.9
2012
Female, age 85, both hemispheres
44.1
1939
Male, age 80, both hemispheres
43.7
2167
Male, age 76, both hemispheres
39.4
2366
Female, age 91, both hemispheres
32.5
Reticulotegmental nucleus nTPM: 38.2
2325
Male, age 76, both hemispheres
42.5
2333
Male, age 80, both hemispheres
39.9
2322
Female, age 91, both hemispheres
36.7
2452
Male, age 74, both hemispheres
33.5
Spinal trigeminal nucleus, oral nTPM: 39.9
1978
Male, age 76, both hemispheres
41.5
2164
Male, age 80, both hemispheres
40.0
2737
Female, age 85, both hemispheres
38.3
Subcoeruleus area nTPM: 39.5
2369
Female, age 85, left hemisphere
42.2
2089
Male, age 76, left hemisphere
39.7
2323
Female, age 91, left hemisphere
39.5
1958
Male, age 80, both hemispheres
38.7
2451
Male, age 74, both hemispheres
37.5
Superior olive nTPM: 39.0
2364
Male, age 74, right hemisphere
43.9
1875
Female, age 85, both hemispheres
42.4
2020
Male, age 76, both hemispheres
40.6
2329
Male, age 80, right hemisphere
37.5
2561
Female, age 91, both hemispheres
30.4
Ventral periolivary nuclei nTPM: 37.0
2130
Female, age 85, both hemispheres
44.3
2023
Male, age 76, both hemispheres
38.8
2165
Male, age 80, both hemispheres
35.3
2794
Female, age 91, left hemisphere
29.6
Ventrolateral tegmental area, A5 NE cell group nTPM: 38.8
1959
Male, age 76, both hemispheres
45.5
2840
Female, age 85, both hemispheres
45.2
2449
Male, age 74, both hemispheres
37.4
2359
Male, age 61, both hemispheres
37.1
2161
Male, age 80, both hemispheres
36.0
2456
Female, age 91, both hemispheres
31.8
PONS - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
10.7
Pig sample
Sample description
nTPM
Pons nTPM: 10.7
Samples: 4
Max nTPM: 13.7
Min nTPM: 9.2
Sample A
Female
13.7
Sample B
Female
9.2
Sample C
Male
9.7
Sample D
Male
10.2
PONS - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.
The Human Protein Atlas project is funded
