MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:1.3 nTPM
HPA Brain:8.8 nTPM
GTEx:1.3 nTPM
FANTOM5:14.1 Scaled Tags Per Million
Pig:26.6 nTPM
Mouse:7.5 nTPM
Allen mouse:0.9 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 8.8
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 7.1
2019 Male, age 18, unknown 11.7
2666 Male, age 74, left hemisphere 8.2
1827 Male, age 72, unknown 6.8
2411 Female, age 72, unknown 6.7
1870 Female, age 42, unknown 6.4
2828 Female, age 72, unknown 6.4
1833 Male, age 53, unknown 6.3
2586 Male, age 75, left hemisphere 6.3
1830 Male, age 51, unknown 6.2
2219 Male, age 76, both hemispheres 5.8
Dorsal raphe nucleus
nTPM: 5.8
1828 Male, age 53, unknown 7.4
2016 Female, age 72, unknown 5.6
2750 Male, age 76, both hemispheres 5.5
2047 Male, age 72, unknown 5.3
2298 Female, age 72, unknown 5.1
Inferior colliculus
nTPM: 6.2
2097 Female, age 72, unknown 7.3
1890 Male, age 53, unknown 6.2
1848 Female, age 42, unknown 6.1
2849 Male, age 72, unknown 5.0
Median raphe nucleus
nTPM: 5.8
2220 Male, age 76, midline 5.8
Periaquaductal grey, anterior
nTPM: 6.0
2502 Female, age 75, unknown 6.5
1947 Male, age 18, unknown 5.9
1795 Male, age 51, unknown 5.6
Periaquaductal grey, dorsal
nTPM: 5.6
1831 Male, age 72, unknown 7.2
2850 Male, age 76, both hemispheres 5.7
2464 Female, age 72, unknown 5.6
1840 Male, age 53, unknown 4.0
Periaquaductal grey, lateral
nTPM: 5.5
2140 Male, age 76, both hemispheres 5.9
2272 Male, age 74, both hemispheres 5.6
2053 Male, age 18, unknown 5.0
Pretectal area
nTPM: 8.8
2007 Male, age 72, unknown 14.4
1817 Female, age 42, unknown 13.5
1816 Male, age 51, unknown 13.2
1944 Female, age 72, unknown 11.1
1815 Male, age 53, unknown 10.3
2273 Male, age 74, both hemispheres 7.2
2667 Female, age 75, unknown 6.9
2316 Male, age 76, right hemisphere 6.0
2407 Male, age 75, both hemispheres 5.4
2224 Female, age 72, unknown 5.0
2825 Male, age 18, unknown 4.4
Red nucleus
nTPM: 7.2
2785 Male, age 18, unknown 10.7
2588 Male, age 74, left hemisphere 7.8
1821 Female, age 72, unknown 7.4
2503 Female, age 72, unknown 7.4
1865 Male, age 51, unknown 7.3
1954 Female, age 42, unknown 7.3
1904 Male, age 53, unknown 7.1
2725 Female, age 75, unknown 6.4
2584 Male, age 75, left hemisphere 6.2
2227 Male, age 72, unknown 6.1
2769 Male, age 72, unknown 6.1
2823 Male, age 76, right hemisphere 6.0
Substantia nigra
nTPM: 6.8
1889 Female, age 72, unknown 9.7
2665 Male, age 74, both hemispheres 8.8
1941 Male, age 53, unknown 8.5
2583 Male, age 75, right hemisphere 7.1
2409 Female, age 72, unknown 6.7
2590 Female, age 75, unknown 6.4
1851 Male, age 51, unknown 5.8
1916 Female, age 42, unknown 5.4
2241 Male, age 72, unknown 5.2
2699 Male, age 18, unknown 4.3
Superior colliculus
nTPM: 7.0
2087 Female, age 72, unknown 9.4
2668 Female, age 75, unknown 8.7
2261 Male, age 18, unknown 8.1
1913 Female, age 42, unknown 8.0
2587 Male, age 74, left hemisphere 7.4
1995 Male, age 72, unknown 6.7
1796 Male, age 53, unknown 5.9
1895 Male, age 76, right hemisphere 5.8
1839 Male, age 51, unknown 5.4
2664 Male, age 75, both hemispheres 5.1
Ventral tegmental area
nTPM: 5.6
2410 Female, age 72, unknown 7.0
2223 Female, age 72, unknown 6.1
1942 Male, age 51, unknown 5.7
2218 Male, age 76, both hemispheres 5.5
1915 Female, age 42, unknown 4.8
2021 Male, age 53, unknown 4.5

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 1.3
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 1.3
Samples: 139

Max nTPM: 3.1
Min nTPM: 0.4
Std nTPM: 0.4
Median nTPM: 1.3
GTEX-1JMQK-0011-R2a-SM-EYYXQ 60-69 years, male 3.1
GTEX-OHPN-0011-R2A-SM-2I5FB 60-69 years, female 2.4
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 2.4
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 2.3
GTEX-14BIN-0011-R2a-SM-5S2RJ 50-59 years, female 2.3
GTEX-T5JC-0011-R2A-SM-32PLZ 20-29 years, male 2.3
GTEX-132Q8-0011-R2b-SM-5EQ5Z 60-69 years, male 2.2
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 2.2
GTEX-11TUW-0011-R2b-SM-DO92T 60-69 years, male 2.2
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 2.1
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 2.1
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 14.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 14.1
FF:10158-103A5 76 years, female 14.1

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 26.6
Pig sample Sample description nTPM
Substantia nigra
nTPM: 16.1
Samples: 4

Max nTPM: 16.9
Min nTPM: 15.6
Sample A Female 15.6
Sample B Female 16.4
Sample C Male 15.6
Sample D Male 16.9
Midbrain
nTPM: 20.8
Samples: 4

Max nTPM: 36.0
Min nTPM: 15.4
Sample A Female 16.2
Sample B Female 15.5
Sample C Male 36.0
Sample D Male 15.4
Periaqueductal gray
nTPM: 13.3
Samples: 3

Max nTPM: 14.6
Min nTPM: 11.8
Sample B Female 14.6
Sample C Male 13.5
Sample D Male 11.8
Superior colliculi
nTPM: 26.7
Samples: 4

Max nTPM: 44.2
Min nTPM: 16.5
Sample A Female 16.5
Sample B Female 25.9
Sample C Male 44.2
Sample D Male 20.0

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 7.5
Mouse sample Sample description nTPM
Midbrain
nTPM: 7.5
Samples: 4

Max nTPM: 8.3
Min nTPM: 6.4
Sample A Male 6.4
Sample B Male 8.3
Sample C Female 7.9
Sample D Female 7.5

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 0.9
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.9
74514186 Antisense, RP_060208_02_B02, Mouse strain C57BL/6J (56 days, male) 0.9

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