MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:1.0 nTPM
HPA Brain:32.3 nTPM
GTEx:1.0 nTPM
FANTOM5:1.1 Scaled Tags Per Million
Pig:14.3 nTPM
Mouse:7.8 nTPM

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 32.3
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 25.2
2219 Male, age 76, both hemispheres 40.8
2019 Male, age 18, unknown 31.9
2586 Male, age 75, left hemisphere 29.3
1827 Male, age 72, unknown 26.5
2666 Male, age 74, left hemisphere 26.3
2828 Female, age 72, unknown 24.9
2411 Female, age 72, unknown 20.4
1833 Male, age 53, unknown 19.2
1830 Male, age 51, unknown 16.4
1870 Female, age 42, unknown 16.4
Dorsal raphe nucleus
nTPM: 23.2
1828 Male, age 53, unknown 31.4
2047 Male, age 72, unknown 25.5
2298 Female, age 72, unknown 23.6
2750 Male, age 76, both hemispheres 19.6
2016 Female, age 72, unknown 16.0
Inferior colliculus
nTPM: 20.0
2097 Female, age 72, unknown 21.7
1890 Male, age 53, unknown 20.1
1848 Female, age 42, unknown 19.3
2849 Male, age 72, unknown 18.9
Median raphe nucleus
nTPM: 27.6
2220 Male, age 76, midline 27.6
Periaquaductal grey, anterior
nTPM: 27.1
2502 Female, age 75, unknown 32.0
1795 Male, age 51, unknown 30.5
1947 Male, age 18, unknown 18.8
Periaquaductal grey, dorsal
nTPM: 20.4
1831 Male, age 72, unknown 24.6
1840 Male, age 53, unknown 19.6
2850 Male, age 76, both hemispheres 19.0
2464 Female, age 72, unknown 18.4
Periaquaductal grey, lateral
nTPM: 17.9
2053 Male, age 18, unknown 20.5
2140 Male, age 76, both hemispheres 18.9
2272 Male, age 74, both hemispheres 14.4
Pretectal area
nTPM: 31.9
1944 Female, age 72, unknown 53.7
1816 Male, age 51, unknown 53.1
1817 Female, age 42, unknown 44.9
2007 Male, age 72, unknown 42.8
1815 Male, age 53, unknown 36.1
2667 Female, age 75, unknown 30.6
2407 Male, age 75, both hemispheres 20.0
2224 Female, age 72, unknown 19.8
2825 Male, age 18, unknown 18.4
2316 Male, age 76, right hemisphere 17.2
2273 Male, age 74, both hemispheres 14.2
Red nucleus
nTPM: 18.1
2785 Male, age 18, unknown 28.1
2584 Male, age 75, left hemisphere 26.0
2823 Male, age 76, right hemisphere 19.8
1821 Female, age 72, unknown 19.3
2588 Male, age 74, left hemisphere 18.3
1954 Female, age 42, unknown 17.0
2503 Female, age 72, unknown 16.0
2769 Male, age 72, unknown 15.9
2227 Male, age 72, unknown 15.0
1865 Male, age 51, unknown 14.9
1904 Male, age 53, unknown 14.9
2725 Female, age 75, unknown 12.4
Substantia nigra
nTPM: 32.3
2665 Male, age 74, both hemispheres 49.0
1916 Female, age 42, unknown 45.3
1889 Female, age 72, unknown 41.1
1941 Male, age 53, unknown 39.1
1851 Male, age 51, unknown 32.0
2241 Male, age 72, unknown 28.2
2409 Female, age 72, unknown 24.7
2699 Male, age 18, unknown 22.5
2583 Male, age 75, right hemisphere 22.2
2590 Female, age 75, unknown 18.4
Superior colliculus
nTPM: 27.6
2668 Female, age 75, unknown 47.5
2087 Female, age 72, unknown 43.2
2261 Male, age 18, unknown 32.4
2664 Male, age 75, both hemispheres 26.5
1796 Male, age 53, unknown 25.1
1895 Male, age 76, right hemisphere 24.6
1913 Female, age 42, unknown 21.8
1839 Male, age 51, unknown 20.1
2587 Male, age 74, left hemisphere 17.7
1995 Male, age 72, unknown 17.5
Ventral tegmental area
nTPM: 25.0
2218 Male, age 76, both hemispheres 33.6
2410 Female, age 72, unknown 30.5
1915 Female, age 42, unknown 28.2
1942 Male, age 51, unknown 24.4
2021 Male, age 53, unknown 17.4
2223 Female, age 72, unknown 16.0

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 1.0
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 1.0
Samples: 139

Max nTPM: 8.0
Min nTPM: 0.0
Std nTPM: 1.3
Median nTPM: 0.4
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 8.0
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 5.6
GTEX-WHSE-0011-R2A-SM-3P5ZL 20-29 years, male 5.2
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 4.9
GTEX-145LS-0011-R2a-SM-5PNZI 60-69 years, female 4.8
GTEX-1GN73-0011-R2a-SM-CJI2V 60-69 years, male 4.5
GTEX-T5JC-0011-R2A-SM-32PLZ 20-29 years, male 4.4
GTEX-1399T-0011-R2b-SM-5DUXM 60-69 years, male 4.3
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 3.9
GTEX-N7MS-0011-R2a-SM-2HML6 60-69 years, male 3.9
GTEX-13SLX-0011-R2b-SM-5S2VP 50-59 years, female 3.5
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 1.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 1.1
FF:10158-103A5 76 years, female 1.1

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 14.3
Pig sample Sample description nTPM
Substantia nigra
nTPM: 11.6
Samples: 4

Max nTPM: 17.7
Min nTPM: 6.6
Sample A Female 13.4
Sample B Female 8.5
Sample C Male 17.7
Sample D Male 6.6
Midbrain
nTPM: 14.2
Samples: 4

Max nTPM: 26.9
Min nTPM: 3.5
Sample A Female 3.5
Sample B Female 9.9
Sample C Male 26.9
Sample D Male 16.4
Periaqueductal gray
nTPM: 9.2
Samples: 3

Max nTPM: 10.7
Min nTPM: 7.3
Sample B Female 9.6
Sample C Male 10.7
Sample D Male 7.3
Superior colliculi
nTPM: 14.3
Samples: 4

Max nTPM: 20.9
Min nTPM: 7.0
Sample A Female 13.8
Sample B Female 7.0
Sample C Male 20.9
Sample D Male 15.4

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 7.8
Mouse sample Sample description nTPM
Midbrain
nTPM: 7.9
Samples: 4

Max nTPM: 8.2
Min nTPM: 7.5
Sample A Male 7.5
Sample B Male 8.2
Sample C Female 7.9
Sample D Female 7.8

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