MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:54.0 nTPM
HPA Brain:112.0 nTPM
GTEx:54.0 nTPM
FANTOM5:129.8 Scaled Tags Per Million
Pig:30.0 nTPM
Mouse:25.7 nTPM
Allen mouse:5.6 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 112.0
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 74.2
2019 Male, age 18, unknown 102.6
2411 Female, age 72, unknown 95.5
1830 Male, age 51, unknown 93.1
1833 Male, age 53, unknown 88.4
1870 Female, age 42, unknown 71.3
2666 Male, age 74, left hemisphere 65.1
2828 Female, age 72, unknown 64.5
2586 Male, age 75, left hemisphere 54.5
1827 Male, age 72, unknown 53.7
2219 Male, age 76, both hemispheres 53.7
Dorsal raphe nucleus
nTPM: 57.4
2750 Male, age 76, both hemispheres 99.2
2016 Female, age 72, unknown 63.2
1828 Male, age 53, unknown 54.5
2298 Female, age 72, unknown 39.2
2047 Male, age 72, unknown 31.0
Inferior colliculus
nTPM: 49.5
1890 Male, age 53, unknown 60.8
1848 Female, age 42, unknown 48.8
2097 Female, age 72, unknown 45.1
2849 Male, age 72, unknown 43.0
Median raphe nucleus
nTPM: 38.1
2220 Male, age 76, midline 38.1
Periaquaductal grey, anterior
nTPM: 44.0
1947 Male, age 18, unknown 50.1
2502 Female, age 75, unknown 43.0
1795 Male, age 51, unknown 38.9
Periaquaductal grey, dorsal
nTPM: 35.9
2464 Female, age 72, unknown 62.4
1831 Male, age 72, unknown 34.4
2850 Male, age 76, both hemispheres 25.9
1840 Male, age 53, unknown 21.0
Periaquaductal grey, lateral
nTPM: 40.1
2272 Male, age 74, both hemispheres 48.5
2053 Male, age 18, unknown 42.9
2140 Male, age 76, both hemispheres 28.9
Pretectal area
nTPM: 50.0
2316 Male, age 76, right hemisphere 90.0
1815 Male, age 53, unknown 73.7
2007 Male, age 72, unknown 63.7
2407 Male, age 75, both hemispheres 56.8
1817 Female, age 42, unknown 49.0
2825 Male, age 18, unknown 47.5
2224 Female, age 72, unknown 44.5
2273 Male, age 74, both hemispheres 40.5
1816 Male, age 51, unknown 30.1
2667 Female, age 75, unknown 27.2
1944 Female, age 72, unknown 27.1
Red nucleus
nTPM: 112.0
2823 Male, age 76, right hemisphere 159.8
1904 Male, age 53, unknown 138.3
1865 Male, age 51, unknown 131.3
1821 Female, age 72, unknown 122.9
2769 Male, age 72, unknown 121.0
2227 Male, age 72, unknown 120.9
2785 Male, age 18, unknown 111.0
2503 Female, age 72, unknown 106.0
2588 Male, age 74, left hemisphere 91.7
1954 Female, age 42, unknown 90.8
2725 Female, age 75, unknown 89.0
2584 Male, age 75, left hemisphere 61.7
Substantia nigra
nTPM: 59.6
2590 Female, age 75, unknown 97.4
2583 Male, age 75, right hemisphere 76.1
2409 Female, age 72, unknown 72.7
1851 Male, age 51, unknown 67.6
1889 Female, age 72, unknown 63.5
2699 Male, age 18, unknown 51.2
2241 Male, age 72, unknown 48.3
1941 Male, age 53, unknown 43.1
1916 Female, age 42, unknown 40.0
2665 Male, age 74, both hemispheres 36.5
Superior colliculus
nTPM: 64.8
1995 Male, age 72, unknown 104.6
1895 Male, age 76, right hemisphere 104.1
1913 Female, age 42, unknown 81.5
2668 Female, age 75, unknown 74.7
1839 Male, age 51, unknown 64.6
2587 Male, age 74, left hemisphere 61.2
1796 Male, age 53, unknown 47.0
2087 Female, age 72, unknown 38.4
2261 Male, age 18, unknown 36.2
2664 Male, age 75, both hemispheres 35.8
Ventral tegmental area
nTPM: 56.9
2410 Female, age 72, unknown 78.5
2223 Female, age 72, unknown 67.9
1915 Female, age 42, unknown 51.8
1942 Male, age 51, unknown 48.6
2218 Male, age 76, both hemispheres 47.9
2021 Male, age 53, unknown 46.7

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 54.0
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 54.0
Samples: 139

Max nTPM: 240.5
Min nTPM: 10.8
Std nTPM: 34.9
Median nTPM: 41.6
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 240.5
GTEX-T5JC-0011-R2A-SM-32PLZ 20-29 years, male 160.9
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 154.0
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 148.6
GTEX-N7MT-0011-R2a-SM-2I3GI 60-69 years, female 143.0
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 136.9
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 128.0
GTEX-1GN1U-0011-R2a-SM-CL53A 50-59 years, female 119.8
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 119.4
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 116.3
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 115.7
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 129.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 129.8
FF:10158-103A5 76 years, female 129.8

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 30.0
Pig sample Sample description nTPM
Substantia nigra
nTPM: 30.0
Samples: 4

Max nTPM: 44.0
Min nTPM: 23.5
Sample A Female 28.7
Sample B Female 23.5
Sample C Male 23.8
Sample D Male 44.0
Midbrain
nTPM: 27.8
Samples: 4

Max nTPM: 35.7
Min nTPM: 18.6
Sample A Female 35.7
Sample B Female 33.2
Sample C Male 18.6
Sample D Male 23.8
Periaqueductal gray
nTPM: 25.4
Samples: 3

Max nTPM: 28.9
Min nTPM: 20.2
Sample B Female 28.9
Sample C Male 20.2
Sample D Male 27.1
Superior colliculi
nTPM: 26.7
Samples: 4

Max nTPM: 29.3
Min nTPM: 24.3
Sample A Female 26.9
Sample B Female 24.3
Sample C Male 26.2
Sample D Male 29.3

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 25.7
Mouse sample Sample description nTPM
Midbrain
nTPM: 25.7
Samples: 4

Max nTPM: 29.5
Min nTPM: 23.2
Sample A Male 26.8
Sample B Male 23.3
Sample C Female 23.2
Sample D Female 29.5

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 5.6
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 5.6
576427 Antisense, RP_040826_01_H01, Mouse strain C57BL/6J (56 days, male) 5.6

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