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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
162.6
nTPM
HPA Brain:
99.7
nTPM
GTEx:
162.6
nTPM
FANTOM5:
128.3
Scaled Tags Per Million
Pig:
155.7
nTPM
Mouse:
511.3
nTPM
Allen mouse:
7.9
Expression energy
MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
99.7
Sample id
Sample description
nTPM
Cuneiform nucleus nTPM: 79.0
2019
Male, age 18, unknown
131.3
2411
Female, age 72, unknown
84.7
1827
Male, age 72, unknown
82.3
2586
Male, age 75, left hemisphere
80.4
1870
Female, age 42, unknown
72.0
2828
Female, age 72, unknown
69.6
1833
Male, age 53, unknown
69.1
2219
Male, age 76, both hemispheres
67.6
2666
Male, age 74, left hemisphere
67.2
1830
Male, age 51, unknown
65.8
Dorsal raphe nucleus nTPM: 80.4
1828
Male, age 53, unknown
100.3
2298
Female, age 72, unknown
94.4
2750
Male, age 76, both hemispheres
72.0
2047
Male, age 72, unknown
70.1
2016
Female, age 72, unknown
65.4
Inferior colliculus nTPM: 87.1
2097
Female, age 72, unknown
114.5
1890
Male, age 53, unknown
93.9
1848
Female, age 42, unknown
82.8
2849
Male, age 72, unknown
56.9
Median raphe nucleus nTPM: 59.9
2220
Male, age 76, midline
59.9
Periaquaductal grey, anterior nTPM: 85.6
2502
Female, age 75, unknown
90.1
1947
Male, age 18, unknown
88.5
1795
Male, age 51, unknown
78.3
Periaquaductal grey, dorsal nTPM: 58.4
1831
Male, age 72, unknown
63.7
2464
Female, age 72, unknown
62.2
1840
Male, age 53, unknown
55.2
2850
Male, age 76, both hemispheres
52.6
Periaquaductal grey, lateral nTPM: 66.2
2272
Male, age 74, both hemispheres
85.8
2053
Male, age 18, unknown
61.6
2140
Male, age 76, both hemispheres
51.0
Pretectal area nTPM: 99.7
1817
Female, age 42, unknown
143.4
2007
Male, age 72, unknown
136.7
1816
Male, age 51, unknown
134.5
1944
Female, age 72, unknown
131.4
2667
Female, age 75, unknown
105.4
1815
Male, age 53, unknown
98.9
2273
Male, age 74, both hemispheres
94.0
2316
Male, age 76, right hemisphere
74.3
2224
Female, age 72, unknown
70.1
2825
Male, age 18, unknown
55.4
2407
Male, age 75, both hemispheres
52.8
Red nucleus nTPM: 94.6
1821
Female, age 72, unknown
130.3
2785
Male, age 18, unknown
116.5
2503
Female, age 72, unknown
103.5
1865
Male, age 51, unknown
96.7
2725
Female, age 75, unknown
94.4
1954
Female, age 42, unknown
92.9
2769
Male, age 72, unknown
90.7
1904
Male, age 53, unknown
90.0
2227
Male, age 72, unknown
90.0
2823
Male, age 76, right hemisphere
88.6
2588
Male, age 74, left hemisphere
76.2
2584
Male, age 75, left hemisphere
65.4
Substantia nigra nTPM: 92.6
1889
Female, age 72, unknown
120.0
1916
Female, age 42, unknown
105.8
1851
Male, age 51, unknown
102.1
2409
Female, age 72, unknown
97.7
1941
Male, age 53, unknown
97.3
2241
Male, age 72, unknown
94.9
2665
Male, age 74, both hemispheres
84.2
2590
Female, age 75, unknown
77.8
2699
Male, age 18, unknown
75.2
2583
Male, age 75, right hemisphere
70.8
Superior colliculus nTPM: 82.6
2087
Female, age 72, unknown
110.3
1895
Male, age 76, right hemisphere
92.3
2587
Male, age 74, left hemisphere
89.2
1995
Male, age 72, unknown
83.0
1796
Male, age 53, unknown
82.9
2261
Male, age 18, unknown
80.5
2668
Female, age 75, unknown
80.3
1913
Female, age 42, unknown
77.9
1839
Male, age 51, unknown
72.3
2664
Male, age 75, both hemispheres
57.2
Ventral tegmental area nTPM: 77.2
2410
Female, age 72, unknown
108.4
1915
Female, age 42, unknown
84.9
2218
Male, age 76, both hemispheres
82.0
1942
Male, age 51, unknown
65.9
2223
Female, age 72, unknown
64.3
2021
Male, age 53, unknown
57.6
MIDBRAIN - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
162.6
GTEx sample id
Sample description
nTPM
Brain - Substantia nigra Average nTPM: 162.6
Samples: 139
Max nTPM: 273.4
Min nTPM: 80.3
Std nTPM: 36.5
Median nTPM: 159.7
GTEX-Z93S-0011-R2a-SM-4RGNG
50-59 years, male
273.4
GTEX-1GZ2Q-0011-R2b-SM-9OSWO
40-49 years, male
260.8
GTEX-1LVAO-0011-R2a-SM-EYYX1
60-69 years, male
252.9
GTEX-15ER7-0011-R2a-SM-6M46O
20-29 years, female
249.3
GTEX-1B8L1-0011-R2a-SM-9OSVL
60-69 years, male
237.0
GTEX-13O3Q-0011-R2b-SM-5KM3K
50-59 years, male
225.7
GTEX-12ZZX-0011-R2a-SM-5EGLG
40-49 years, female
224.1
GTEX-13OVJ-0011-R2b-SM-5L3GP
50-59 years, female
220.1
GTEX-11TUW-0011-R2b-SM-DO92T
60-69 years, male
219.7
GTEX-1B933-0011-R2b-SM-7IGNM
50-59 years, female
216.6
GTEX-1EMGI-0011-R2b-SM-9OSVS
60-69 years, male
213.5
GTEX-1IY9M-0011-R2a-SM-D4P29
60-69 years, male
213.4
GTEX-1LVA9-0011-R2a-SM-EZ6MJ
50-59 years, male
210.9
GTEX-1MA7X-0011-R2b-SM-EZ6MT
60-69 years, male
209.3
GTEX-1313W-0011-R2a-SM-5EGLF
50-59 years, female
207.7
GTEX-14C5O-0011-R2a-SM-5ZZV2
60-69 years, male
206.3
GTEX-WHSE-0011-R2A-SM-3P5ZL
20-29 years, male
206.3
GTEX-1J1OQ-0011-R2b-SM-ARU88
40-49 years, female
205.6
GTEX-13CF2-0011-R2a-SM-5L3DC
60-69 years, male
205.3
GTEX-1HFI6-0011-R2a-SM-CMKH5
40-49 years, male
204.8
GTEX-1EKGG-0011-R2a-SM-CE6R8
60-69 years, male
203.7
GTEX-R55E-0011-R2A-SM-EYYV9
20-29 years, male
203.4
GTEX-1B8SG-0011-R2b-SM-79OOT
50-59 years, male
203.2
GTEX-1CB4G-0011-R2a-SM-9QEGQ
60-69 years, male
202.2
GTEX-13SLX-0011-R2b-SM-5S2VP
50-59 years, female
199.8
GTEX-1C6VR-0011-R2a-SM-7RHGZ
60-69 years, male
199.7
GTEX-11GSP-0011-R2b-SM-9QEGE
60-69 years, female
198.7
GTEX-1E1VI-0011-R2a-SM-9QEGS
50-59 years, male
197.4
GTEX-14PN4-0011-R2a-SM-6EU2Y
50-59 years, male
194.0
GTEX-1B996-0011-R2a-SM-7IGON
60-69 years, male
193.8
GTEX-1H3VE-0011-R2a-SM-CE6SA
40-49 years, male
189.9
GTEX-17HG3-0011-R2a-SM-7MGVX
30-39 years, female
189.3
GTEX-14BIM-0011-R2b-SM-69LQ6
60-69 years, female
189.2
GTEX-14JG1-0011-R2a-SM-5ZZVE
40-49 years, male
189.1
GTEX-12WSH-0011-R2a-SM-5GU68
50-59 years, male
186.7
GTEX-1GN2E-0011-R2a-SM-9WG7D
60-69 years, male
185.6
GTEX-1445S-0011-R2b-SM-5PNUH
60-69 years, male
183.7
GTEX-1F6I4-0011-R2a-SM-CL536
60-69 years, male
181.9
GTEX-11DZ1-0011-R2a-SM-DNZZM
50-59 years, male
181.5
GTEX-1H3O1-0011-R2b-SM-CKZOT
60-69 years, male
181.4
GTEX-1HT8W-0011-R2a-SM-CMKH9
30-39 years, male
180.4
GTEX-1H1ZS-0011-R2b-SM-CL54Q
70-79 years, male
180.1
GTEX-15EO6-0011-R2a-SM-6M46R
50-59 years, male
179.9
GTEX-131XH-0011-R2b-SM-5DUVY
50-59 years, male
179.7
GTEX-15RJE-0011-R2b-SM-79OMP
40-49 years, male
178.2
GTEX-T5JC-0011-R2A-SM-32PLZ
20-29 years, male
178.0
GTEX-1IGQW-0011-R2b-SM-D4P26
60-69 years, male
177.0
GTEX-12WSF-0011-R2a-SM-5DUVU
70-79 years, male
176.3
GTEX-YJ89-0011-R2b-SM-4RGLT
60-69 years, male
175.9
GTEX-1H23P-0011-R2a-SM-CKZP3
60-69 years, male
174.6
GTEX-11GS4-0011-R2a-SM-DO942
60-69 years, male
174.1
GTEX-1EU9M-0011-R2b-SM-9QEH7
60-69 years, male
173.7
GTEX-13SLW-0011-R2b-SM-5O9C6
70-79 years, male
172.4
GTEX-1399T-0011-R2b-SM-5DUXM
60-69 years, male
171.5
GTEX-11EMC-0011-R2b-SM-DO114
60-69 years, female
171.3
GTEX-1IKOH-0011-R2a-SM-CMKHO
60-69 years, female
171.0
GTEX-1GN73-0011-R2a-SM-CJI2V
60-69 years, male
169.6
GTEX-13N2G-0011-R2a-SM-5MR4Q
60-69 years, male
168.2
GTEX-1A3MX-0011-R2b-SM-7EWFL
60-69 years, male
167.5
GTEX-1LSNL-0011-R2a-SM-EZ6MK
50-59 years, male
167.1
GTEX-1F48J-0011-R2a-SM-CL535
50-59 years, female
166.8
GTEX-145LS-0011-R2a-SM-5PNZI
60-69 years, female
164.6
GTEX-132Q8-0011-R2b-SM-5EQ5Z
60-69 years, male
163.5
GTEX-11PRG-0011-R2a-SM-69LQ5
50-59 years, male
163.1
GTEX-1I1GS-0011-R2b-SM-CMKHG
60-69 years, male
162.6
GTEX-X585-0011-R2B-SM-46MVF
50-59 years, male
161.8
GTEX-ZV68-0011-R2a-SM-4YCDK
50-59 years, female
161.5
GTEX-1LH75-0011-R2b-SM-EYYWQ
50-59 years, female
160.6
GTEX-1A8G7-0011-R2a-SM-7IGQI
60-69 years, male
159.9
GTEX-13OW8-0011-R2a-SM-5L3G2
60-69 years, male
159.7
GTEX-13OW6-0011-R2a-SM-5L3HG
50-59 years, male
159.2
GTEX-QDT8-0011-R2A-SM-32PKQ
30-39 years, female
158.4
GTEX-1HB9E-0011-R2b-SM-A96RW
50-59 years, male
158.1
GTEX-S7SE-0011-R2A-SM-2XCDC
50-59 years, male
157.8
GTEX-N7MS-0011-R2a-SM-2HML6
60-69 years, male
157.7
GTEX-T6MN-0011-R2A-SM-32QOW
50-59 years, male
157.7
GTEX-1GTWX-0011-R2b-SM-ADEH5
60-69 years, male
157.6
GTEX-ZDXO-0011-R2b-SM-4WKFG
60-69 years, male
156.0
GTEX-13G51-0011-R2b-SM-5LZXS
60-69 years, male
155.5
GTEX-13PDP-0011-R2b-SM-5O9DH
60-69 years, male
153.5
GTEX-1GMR8-0011-R2a-SM-CE6RD
50-59 years, female
152.7
GTEX-13O3O-0011-R2b-SM-5P9H1
60-69 years, female
152.0
GTEX-14ASI-0011-R2b-SM-5YY9H
60-69 years, male
149.8
GTEX-Q2AG-0011-R2A-SM-2HMIT
40-49 years, female
149.2
GTEX-13NYS-0011-R2b-SM-5MR4G
60-69 years, male
148.8
GTEX-T2IS-0011-R2A-SM-32QPF
20-29 years, female
148.1
GTEX-13RTJ-0011-R2a-SM-5PNW9
60-69 years, male
147.7
GTEX-RU72-0011-R2A-SM-2TF6O
50-59 years, female
147.0
GTEX-15CHQ-0011-R2b-SM-6AJAD
60-69 years, male
146.0
GTEX-1JMQK-0011-R2a-SM-EYYXQ
60-69 years, male
146.0
GTEX-1I1GV-0011-R2a-SM-ARZLF
60-69 years, male
145.8
GTEX-11WQC-0011-R2a-SM-DO927
60-69 years, male
145.5
GTEX-14PJO-0011-R2a-SM-5ZZVF
60-69 years, male
144.2
GTEX-13X6I-0011-R2b-SM-5PNWQ
60-69 years, male
143.5
GTEX-P44G-0011-R2A-SM-2XCD2
30-39 years, male
141.8
GTEX-YFC4-0011-R2a-SM-4V6DZ
40-49 years, female
141.2
GTEX-13X6K-0011-R2b-SM-5P9K3
60-69 years, female
140.1
GTEX-XLM4-0011-R2B-SM-4AT5Z
60-69 years, male
140.0
GTEX-13NYB-0011-R2a-SM-5MR3C
40-49 years, male
138.8
GTEX-QMR6-0011-R2A-SM-32PKV
50-59 years, male
137.9
GTEX-1J8Q2-0011-R2b-SM-EAZ2X
60-69 years, male
136.4
GTEX-16Z82-0011-R2b-SM-79OK9
60-69 years, male
135.2
GTEX-PWO3-0011-R2A-SM-2S1OX
60-69 years, female
134.8
GTEX-ZAB4-0011-R2a-SM-4RGNP
40-49 years, male
134.4
GTEX-1HR98-0011-R2a-SM-ARL7A
60-69 years, male
133.3
GTEX-1GN1U-0011-R2a-SM-CL53A
50-59 years, female
133.2
GTEX-1F75B-0011-R2a-SM-ARL8I
50-59 years, male
133.1
GTEX-1H1DG-0011-R2a-SM-ADEIQ
70-79 years, male
131.7
GTEX-13QJC-0011-R2b-SM-5PNUN
60-69 years, female
130.2
GTEX-11ZTS-0011-R2b-SM-5BC75
60-69 years, female
129.9
GTEX-11UD1-0011-R2b-SM-5BC6O
40-49 years, female
128.6
GTEX-UTHO-0011-R2A-SM-3GIKC
60-69 years, male
128.3
GTEX-1F6IF-0011-R2b-SM-9QEHB
60-69 years, male
127.3
GTEX-15DYW-0011-R2b-SM-7KUKY
60-69 years, female
127.2
GTEX-11GSO-0011-R2a-SM-57WDF
60-69 years, male
126.8
GTEX-17EVP-0011-R2a-SM-7LG4W
40-49 years, male
126.2
GTEX-15DCD-0011-R2b-SM-6LPIE
70-79 years, female
125.2
GTEX-1RLM8-0011-R2a-SM-EZ6N4
50-59 years, male
125.2
GTEX-1IL2U-0011-R2a-SM-ARU6V
60-69 years, male
124.3
GTEX-13FXS-0011-R2b-SM-5K7XX
50-59 years, male
123.8
GTEX-N7MT-0011-R2a-SM-2I3GI
60-69 years, female
123.1
GTEX-18464-0011-R2a-SM-731AL
50-59 years, male
122.6
GTEX-NPJ7-0011-R2a-SM-2I3GF
60-69 years, female
122.0
GTEX-XMD1-0011-R2B-SM-4AT5N
60-69 years, male
120.7
GTEX-14BIN-0011-R2a-SM-5S2RJ
50-59 years, female
120.4
GTEX-1I1CD-0011-R2a-SM-CM2T3
60-69 years, female
119.4
GTEX-147GR-0011-R2b-SM-5S2RQ
60-69 years, male
118.0
GTEX-X4XX-0011-R2A-SM-3P623
60-69 years, male
117.0
GTEX-NL4W-0011-R2a-SM-2I5GV
50-59 years, male
116.2
GTEX-12WSA-0011-R2a-SM-57WDK
60-69 years, male
115.9
GTEX-OHPN-0011-R2A-SM-2I5FB
60-69 years, female
110.3
GTEX-OXRO-0011-R2A-SM-3NB1W
60-69 years, female
109.6
GTEX-12WSD-0011-R2a-SM-5LZWB
60-69 years, female
109.3
GTEX-1LB8K-0011-R2a-SM-EZ6MQ
50-59 years, male
108.2
GTEX-1IKJJ-0011-R2b-SM-ARZLJ
60-69 years, male
107.5
GTEX-NPJ8-0011-R2a-SM-2TC6M
40-49 years, male
100.6
GTEX-139TS-0011-R2b-SM-5J1MX
60-69 years, male
92.9
GTEX-ZE9C-0011-R2a-SM-4WKGH
60-69 years, male
92.9
GTEX-1HSMO-0011-R2a-SM-CL553
60-69 years, male
80.3
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MIDBRAIN - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
511.3
Mouse sample
Sample description
nTPM
Midbrain nTPM: 511.3
Samples: 4
Max nTPM: 522.0
Min nTPM: 502.3
Sample A
Male
522.0
Sample B
Male
505.9
Sample C
Female
502.3
Sample D
Female
514.8
MIDBRAIN - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.