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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
HPA Brain:
47.7
nTPM
GTEx:
85.1
nTPM
FANTOM5:
117.6
Scaled Tags Per Million
Pig:
121.8
nTPM
SUBSTANTIA NIGRA - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
47.7
Sample id
Sample description
nTPM
Substantia nigra nTPM: 47.7
2699
Male, age 18, unknown
96.6
1916
Female, age 42, unknown
56.2
2665
Male, age 74, both hemispheres
54.6
1851
Male, age 51, unknown
48.3
1941
Male, age 53, unknown
47.3
2590
Female, age 75, unknown
44.9
2583
Male, age 75, right hemisphere
39.2
2409
Female, age 72, unknown
35.6
1889
Female, age 72, unknown
33.9
2241
Male, age 72, unknown
20.8
SUBSTANTIA NIGRA - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
85.1
GTEx sample id
Sample description
nTPM
Brain - Substantia nigra Average nTPM: 85.1
Samples: 139
Max nTPM: 280.0
Min nTPM: 12.4
Std nTPM: 43.0
Median nTPM: 80.1
GTEX-1H3VE-0011-R2a-SM-CE6SA
40-49 years, male
280.0
GTEX-1GZ2Q-0011-R2b-SM-9OSWO
40-49 years, male
250.3
GTEX-13X6K-0011-R2b-SM-5P9K3
60-69 years, female
215.6
GTEX-1LVAO-0011-R2a-SM-EYYX1
60-69 years, male
189.2
GTEX-1LSNL-0011-R2a-SM-EZ6MK
50-59 years, male
169.3
GTEX-13SLW-0011-R2b-SM-5O9C6
70-79 years, male
163.0
GTEX-13CF2-0011-R2a-SM-5L3DC
60-69 years, male
157.7
GTEX-YJ89-0011-R2b-SM-4RGLT
60-69 years, male
156.0
GTEX-13OVJ-0011-R2b-SM-5L3GP
50-59 years, female
152.0
GTEX-1GMR8-0011-R2a-SM-CE6RD
50-59 years, female
148.7
GTEX-1H3O1-0011-R2b-SM-CKZOT
60-69 years, male
146.6
GTEX-ZV68-0011-R2a-SM-4YCDK
50-59 years, female
146.4
GTEX-1A8G7-0011-R2a-SM-7IGQI
60-69 years, male
144.3
GTEX-1IGQW-0011-R2b-SM-D4P26
60-69 years, male
144.2
GTEX-1EKGG-0011-R2a-SM-CE6R8
60-69 years, male
143.6
GTEX-132Q8-0011-R2b-SM-5EQ5Z
60-69 years, male
136.5
GTEX-1GTWX-0011-R2b-SM-ADEH5
60-69 years, male
133.2
GTEX-1MA7X-0011-R2b-SM-EZ6MT
60-69 years, male
131.8
GTEX-12WSH-0011-R2a-SM-5GU68
50-59 years, male
128.6
GTEX-1F75B-0011-R2a-SM-ARL8I
50-59 years, male
128.5
GTEX-1B8SG-0011-R2b-SM-79OOT
50-59 years, male
125.4
GTEX-1HR98-0011-R2a-SM-ARL7A
60-69 years, male
124.9
GTEX-1GN2E-0011-R2a-SM-9WG7D
60-69 years, male
122.2
GTEX-15EO6-0011-R2a-SM-6M46R
50-59 years, male
120.5
GTEX-13OW8-0011-R2a-SM-5L3G2
60-69 years, male
120.1
GTEX-13NYS-0011-R2b-SM-5MR4G
60-69 years, male
114.4
GTEX-1C6VR-0011-R2a-SM-7RHGZ
60-69 years, male
114.1
GTEX-1F6IF-0011-R2b-SM-9QEHB
60-69 years, male
109.3
GTEX-YFC4-0011-R2a-SM-4V6DZ
40-49 years, female
109.2
GTEX-12ZZX-0011-R2a-SM-5EGLG
40-49 years, female
107.4
GTEX-1H23P-0011-R2a-SM-CKZP3
60-69 years, male
107.4
GTEX-13N2G-0011-R2a-SM-5MR4Q
60-69 years, male
106.3
GTEX-1IKOH-0011-R2a-SM-CMKHO
60-69 years, female
106.3
GTEX-1H1ZS-0011-R2b-SM-CL54Q
70-79 years, male
105.9
GTEX-XMD1-0011-R2B-SM-4AT5N
60-69 years, male
105.8
GTEX-1A3MX-0011-R2b-SM-7EWFL
60-69 years, male
105.1
GTEX-17HG3-0011-R2a-SM-7MGVX
30-39 years, female
104.9
GTEX-1EU9M-0011-R2b-SM-9QEH7
60-69 years, male
104.9
GTEX-PWO3-0011-R2A-SM-2S1OX
60-69 years, female
104.6
GTEX-1E1VI-0011-R2a-SM-9QEGS
50-59 years, male
104.6
GTEX-11GSO-0011-R2a-SM-57WDF
60-69 years, male
104.3
GTEX-1J1OQ-0011-R2b-SM-ARU88
40-49 years, female
103.4
GTEX-1F48J-0011-R2a-SM-CL535
50-59 years, female
102.7
GTEX-NPJ8-0011-R2a-SM-2TC6M
40-49 years, male
97.9
GTEX-18464-0011-R2a-SM-731AL
50-59 years, male
96.8
GTEX-13O3O-0011-R2b-SM-5P9H1
60-69 years, female
96.2
GTEX-147GR-0011-R2b-SM-5S2RQ
60-69 years, male
96.2
GTEX-11UD1-0011-R2b-SM-5BC6O
40-49 years, female
96.0
GTEX-1B996-0011-R2a-SM-7IGON
60-69 years, male
95.9
GTEX-14BIN-0011-R2a-SM-5S2RJ
50-59 years, female
95.2
GTEX-12WSD-0011-R2a-SM-5LZWB
60-69 years, female
93.9
GTEX-14PJO-0011-R2a-SM-5ZZVF
60-69 years, male
89.4
GTEX-11TUW-0011-R2b-SM-DO92T
60-69 years, male
87.6
GTEX-13X6I-0011-R2b-SM-5PNWQ
60-69 years, male
86.1
GTEX-131XH-0011-R2b-SM-5DUVY
50-59 years, male
85.5
GTEX-14C5O-0011-R2a-SM-5ZZV2
60-69 years, male
85.5
GTEX-12WSA-0011-R2a-SM-57WDK
60-69 years, male
85.0
GTEX-13O3Q-0011-R2b-SM-5KM3K
50-59 years, male
84.8
GTEX-1LVA9-0011-R2a-SM-EZ6MJ
50-59 years, male
84.3
GTEX-12WSF-0011-R2a-SM-5DUVU
70-79 years, male
83.4
GTEX-14ASI-0011-R2b-SM-5YY9H
60-69 years, male
83.1
GTEX-14JG1-0011-R2a-SM-5ZZVE
40-49 years, male
82.5
GTEX-13RTJ-0011-R2a-SM-5PNW9
60-69 years, male
82.4
GTEX-16Z82-0011-R2b-SM-79OK9
60-69 years, male
82.2
GTEX-13FXS-0011-R2b-SM-5K7XX
50-59 years, male
81.8
GTEX-1F6I4-0011-R2a-SM-CL536
60-69 years, male
81.3
GTEX-13QJC-0011-R2b-SM-5PNUN
60-69 years, female
80.4
GTEX-11PRG-0011-R2a-SM-69LQ5
50-59 years, male
80.3
GTEX-1JMQK-0011-R2a-SM-EYYXQ
60-69 years, male
80.3
GTEX-11GSP-0011-R2b-SM-9QEGE
60-69 years, female
80.1
GTEX-1I1GS-0011-R2b-SM-CMKHG
60-69 years, male
79.9
GTEX-1H1DG-0011-R2a-SM-ADEIQ
70-79 years, male
78.1
GTEX-14BIM-0011-R2b-SM-69LQ6
60-69 years, female
76.1
GTEX-R55E-0011-R2A-SM-EYYV9
20-29 years, male
75.7
GTEX-1CB4G-0011-R2a-SM-9QEGQ
60-69 years, male
75.4
GTEX-NL4W-0011-R2a-SM-2I5GV
50-59 years, male
75.2
GTEX-1IL2U-0011-R2a-SM-ARU6V
60-69 years, male
75.2
GTEX-13PDP-0011-R2b-SM-5O9DH
60-69 years, male
73.8
GTEX-ZDXO-0011-R2b-SM-4WKFG
60-69 years, male
72.7
GTEX-1B8L1-0011-R2a-SM-9OSVL
60-69 years, male
70.5
GTEX-OHPN-0011-R2A-SM-2I5FB
60-69 years, female
70.1
GTEX-1I1CD-0011-R2a-SM-CM2T3
60-69 years, female
69.7
GTEX-1LB8K-0011-R2a-SM-EZ6MQ
50-59 years, male
69.0
GTEX-11ZTS-0011-R2b-SM-5BC75
60-69 years, female
66.4
GTEX-QMR6-0011-R2A-SM-32PKV
50-59 years, male
66.3
GTEX-17EVP-0011-R2a-SM-7LG4W
40-49 years, male
66.1
GTEX-11GS4-0011-R2a-SM-DO942
60-69 years, male
65.8
GTEX-1399T-0011-R2b-SM-5DUXM
60-69 years, male
65.4
GTEX-1RLM8-0011-R2a-SM-EZ6N4
50-59 years, male
65.2
GTEX-RU72-0011-R2A-SM-2TF6O
50-59 years, female
63.2
GTEX-13G51-0011-R2b-SM-5LZXS
60-69 years, male
62.4
GTEX-Z93S-0011-R2a-SM-4RGNG
50-59 years, male
62.4
GTEX-15RJE-0011-R2b-SM-79OMP
40-49 years, male
60.8
GTEX-1445S-0011-R2b-SM-5PNUH
60-69 years, male
60.4
GTEX-1GN1U-0011-R2a-SM-CL53A
50-59 years, female
60.1
GTEX-1HB9E-0011-R2b-SM-A96RW
50-59 years, male
59.3
GTEX-OXRO-0011-R2A-SM-3NB1W
60-69 years, female
59.1
GTEX-13NYB-0011-R2a-SM-5MR3C
40-49 years, male
58.4
GTEX-1HSMO-0011-R2a-SM-CL553
60-69 years, male
57.6
GTEX-11EMC-0011-R2b-SM-DO114
60-69 years, female
57.2
GTEX-1IY9M-0011-R2a-SM-D4P29
60-69 years, male
56.8
GTEX-13OW6-0011-R2a-SM-5L3HG
50-59 years, male
56.7
GTEX-ZAB4-0011-R2a-SM-4RGNP
40-49 years, male
56.5
GTEX-1J8Q2-0011-R2b-SM-EAZ2X
60-69 years, male
56.3
GTEX-145LS-0011-R2a-SM-5PNZI
60-69 years, female
55.2
GTEX-ZE9C-0011-R2a-SM-4WKGH
60-69 years, male
54.7
GTEX-15DYW-0011-R2b-SM-7KUKY
60-69 years, female
54.5
GTEX-15CHQ-0011-R2b-SM-6AJAD
60-69 years, male
54.0
GTEX-13SLX-0011-R2b-SM-5S2VP
50-59 years, female
52.4
GTEX-11WQC-0011-R2a-SM-DO927
60-69 years, male
51.9
GTEX-14PN4-0011-R2a-SM-6EU2Y
50-59 years, male
51.3
GTEX-1GN73-0011-R2a-SM-CJI2V
60-69 years, male
51.0
GTEX-NPJ7-0011-R2a-SM-2I3GF
60-69 years, female
49.5
GTEX-T6MN-0011-R2A-SM-32QOW
50-59 years, male
49.4
GTEX-WHSE-0011-R2A-SM-3P5ZL
20-29 years, male
49.1
GTEX-1HT8W-0011-R2a-SM-CMKH9
30-39 years, male
49.0
GTEX-139TS-0011-R2b-SM-5J1MX
60-69 years, male
48.1
GTEX-1B933-0011-R2b-SM-7IGNM
50-59 years, female
47.8
GTEX-XLM4-0011-R2B-SM-4AT5Z
60-69 years, male
47.7
GTEX-1I1GV-0011-R2a-SM-ARZLF
60-69 years, male
46.8
GTEX-1EMGI-0011-R2b-SM-9OSVS
60-69 years, male
46.7
GTEX-1HFI6-0011-R2a-SM-CMKH5
40-49 years, male
46.7
GTEX-T5JC-0011-R2A-SM-32PLZ
20-29 years, male
45.6
GTEX-1IKJJ-0011-R2b-SM-ARZLJ
60-69 years, male
45.0
GTEX-S7SE-0011-R2A-SM-2XCDC
50-59 years, male
43.9
GTEX-N7MT-0011-R2a-SM-2I3GI
60-69 years, female
40.7
GTEX-1313W-0011-R2a-SM-5EGLF
50-59 years, female
38.1
GTEX-15DCD-0011-R2b-SM-6LPIE
70-79 years, female
37.6
GTEX-Q2AG-0011-R2A-SM-2HMIT
40-49 years, female
37.2
GTEX-P44G-0011-R2A-SM-2XCD2
30-39 years, male
36.9
GTEX-15ER7-0011-R2a-SM-6M46O
20-29 years, female
32.9
GTEX-N7MS-0011-R2a-SM-2HML6
60-69 years, male
29.4
GTEX-T2IS-0011-R2A-SM-32QPF
20-29 years, female
27.2
GTEX-X585-0011-R2B-SM-46MVF
50-59 years, male
26.2
GTEX-QDT8-0011-R2A-SM-32PKQ
30-39 years, female
21.5
GTEX-1LH75-0011-R2b-SM-EYYWQ
50-59 years, female
21.3
GTEX-11DZ1-0011-R2a-SM-DNZZM
50-59 years, male
17.7
GTEX-UTHO-0011-R2A-SM-3GIKC
60-69 years, male
16.9
GTEX-X4XX-0011-R2A-SM-3P623
60-69 years, male
12.4
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SUBSTANTIA NIGRA - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.