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TISSUE PRIMARY DATA VAGINA Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
NASOPHARYNX ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Vagina
Tissue proteome
Vagina
Tissue methods
VAGINA - Expression summary
Protein expression
Vaginai

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Squamous epithelial cells: Low
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:52.9 nTPM
GTEx:52.9 nTPM
FANTOM5:80.3 Scaled Tags Per Million

VAGINA - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells. Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Ascending and descending describe two types of gradient, based on difference in staining intensity between enterocytes in crypts and apical enterocytes.

Ascending - the staining intensity is stronger in apical enterocytes (towards the lumen) compared to enterocytes in the crypts (gland based)

Descending - the staining is weaker in apical enterocytes compared to enterocytes in crypts

Antibody HPA035008
Squamous epithelial cells Low


VAGINA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

52.9
GTEx sample id Sample description nTPM
Vagina
Average nTPM: 52.9
Samples: 170

Max nTPM: 179.5
Min nTPM: 5.7
Std nTPM: 36.8
Median nTPM: 47.7
GTEX-11TTK-2726-SM-5GU58 60-69 years, female 179.5
GTEX-1JMQL-2326-SM-CNNPV 50-59 years, female 176.2
GTEX-132AR-1626-SM-5EGHP 50-59 years, female 152.0
GTEX-1LNCM-1026-SM-E9U5D 50-59 years, female 147.0
GTEX-X8HC-2826-SM-46MWJ 50-59 years, female 146.4
GTEX-ZAJG-2926-SM-5HL8P 50-59 years, female 139.9
GTEX-1J1OQ-1826-SM-CL53R 40-49 years, female 138.9
GTEX-1HBPH-2926-SM-9WPNX 40-49 years, female 138.3
GTEX-14AS3-1726-SM-5RQJV 40-49 years, female 134.1
GTEX-17F9Y-2326-SM-7DUFP 70-79 years, female 119.3
GTEX-1J8EW-2526-SM-CKZO2 60-69 years, female 116.8
GTEX-11I78-2026-SM-5987C 50-59 years, female 112.4
GTEX-15ER7-2526-SM-7KUFW 20-29 years, female 111.4
GTEX-1LVAN-1626-SM-CNPQ7 50-59 years, female 111.2
GTEX-1117F-2526-SM-5GZY6 60-69 years, female 108.7
GTEX-1HBPM-2726-SM-9WYUA 60-69 years, female 105.0
GTEX-SE5C-1126-SM-4BRWZ 40-49 years, female 104.1
GTEX-1A8FM-2426-SM-7IGPE 50-59 years, female 101.3
GTEX-11EMC-1926-SM-5A5JU 60-69 years, female 99.6
GTEX-11XUK-1326-SM-5EQM4 40-49 years, female 98.3
GTEX-15SDE-1726-SM-6LPJS 50-59 years, female 97.6
GTEX-131XG-2126-SM-5DUXG 50-59 years, female 93.9
GTEX-N7MT-1926-SM-3LK5N 60-69 years, female 90.2
GTEX-1QP28-1426-SM-EVR4E 50-59 years, female 90.0
GTEX-113JC-1926-SM-5N9GE 50-59 years, female 89.6
GTEX-ZC5H-2226-SM-4WAWS 40-49 years, female 89.1
GTEX-Q734-1426-SM-DTXFX 40-49 years, female 88.3
GTEX-16NGA-1626-SM-72D6M 40-49 years, female 87.4
GTEX-1MCYP-1326-SM-EV7AD 20-29 years, female 87.3
GTEX-S341-1226-SM-4AD5S 40-49 years, female 84.7
GTEX-14PN3-1626-SM-6AJAV 60-69 years, female 84.3
GTEX-1IDJU-1026-SM-AHZ2U 60-69 years, female 83.6
GTEX-14PJ6-1626-SM-6872D 60-69 years, female 83.3
GTEX-XYKS-2826-SM-H7OG8 60-69 years, female 82.4
GTEX-T2IS-1926-SM-4DM74 20-29 years, female 80.9
GTEX-1LVAM-1926-SM-E6CIM 50-59 years, female 78.6
GTEX-ZZPU-2226-SM-5EGIV 50-59 years, female 78.4
GTEX-YJ8O-1226-SM-5P9JE 40-49 years, female 77.7
GTEX-Y3IK-2226-SM-4YCD4 50-59 years, female 77.4
GTEX-ZVT2-0626-SM-5GICR 50-59 years, female 77.4
GTEX-11P81-2126-SM-5HL6N 30-39 years, female 76.4
GTEX-ZLWG-1126-SM-4WWFQ 50-59 years, female 76.0
GTEX-U3ZN-0926-SM-4DXTU 30-39 years, female 75.4
GTEX-QVJO-2526-SM-CYPRA 60-69 years, female 74.8
GTEX-1GF9U-1926-SM-7P8TZ 40-49 years, female 72.5
GTEX-1LKK1-1826-SM-GNIPA 50-59 years, female 72.5
GTEX-14PKU-1326-SM-6871B 40-49 years, female 72.0
GTEX-TML8-1126-SM-4DXSS 40-49 years, female 71.8
GTEX-11VI4-0726-SM-5GU5B 40-49 years, female 71.5
GTEX-S7SF-1426-SM-4AT5A 20-29 years, female 69.8
GTEX-S4UY-1026-SM-4AD53 40-49 years, female 68.1
GTEX-1GN1W-1526-SM-7P8TG 50-59 years, female 66.9
GTEX-13QBU-1726-SM-5IJFQ 40-49 years, female 66.8
GTEX-1MA7W-1226-SM-HL9SB 20-29 years, female 64.5
GTEX-SN8G-2626-SM-EXUQT 50-59 years, female 64.5
GTEX-1NUQO-1826-SM-E6CQU 20-29 years, female 63.0
GTEX-11DXX-1726-SM-5H11T 60-69 years, female 61.1
GTEX-1F5PL-1826-SM-7P8PP 40-49 years, female 61.1
GTEX-1JN76-1526-SM-CNPPF 20-29 years, female 61.1
GTEX-145ME-1426-SM-5RQJS 40-49 years, female 60.5
GTEX-T6MO-1226-SM-4DM5S 40-49 years, female 60.3
GTEX-1C475-0526-SM-793AC 40-49 years, female 59.9
GTEX-1AMFI-1526-SM-73KVY 50-59 years, female 59.6
GTEX-13PL7-2726-SM-5L3GB 60-69 years, female 58.6
GTEX-OHPK-2526-SM-3MJH9 50-59 years, female 57.5
GTEX-1399S-2326-SM-5K7YV 30-39 years, female 56.9
GTEX-1399U-1526-SM-5J2N7 50-59 years, female 56.5
GTEX-1S5ZU-2626-SM-E9TII 20-29 years, female 55.9
GTEX-1LH75-1726-SM-DHXKZ 50-59 years, female 55.3
GTEX-139D8-2626-SM-GJ3QN 30-39 years, female 55.2
GTEX-18A7A-2826-SM-7LT8J 50-59 years, female 54.6
GTEX-1HCU6-2326-SM-ACKXP 60-69 years, female 53.3
GTEX-PWN1-2526-SM-48TDS 40-49 years, female 52.0
GTEX-1CAMS-2326-SM-793CR 40-49 years, female 51.7
GTEX-14A5I-2726-SM-5MR84 50-59 years, female 51.6
GTEX-14H4A-2426-SM-664OQ 40-49 years, female 50.8
GTEX-14JG6-0726-SM-69LQH 30-39 years, female 50.7
GTEX-18D9A-1026-SM-7KFRU 30-39 years, female 50.4
GTEX-1HCUA-1026-SM-A9SMI 50-59 years, female 50.4
GTEX-PWCY-1726-SM-48TD3 20-29 years, female 49.6
GTEX-P78B-2226-SM-3P5ZZ 40-49 years, female 49.1
GTEX-1LGOU-1126-SM-D3LAI 20-29 years, female 48.5
GTEX-ZYY3-2626-SM-5N9DH 60-69 years, female 48.3
GTEX-15SB6-1426-SM-7KUEM 50-59 years, female 47.8
GTEX-RNOR-2526-SM-F21KT 50-59 years, female 47.7
GTEX-W5X1-2226-SM-GRR1G 40-49 years, female 47.6
GTEX-QCQG-1226-SM-48U23 50-59 years, female 47.0
GTEX-ZXES-0626-SM-5E45P 30-39 years, female 46.9
GTEX-ZP4G-0826-SM-4WWF3 20-29 years, female 46.3
GTEX-15SHU-2926-SM-7KUKT 40-49 years, female 46.0
GTEX-13D11-1326-SM-5IJFY 50-59 years, female 45.4
GTEX-1ICG6-1626-SM-ARL81 70-79 years, female 43.5
GTEX-XUW1-0326-SM-4BOOR 50-59 years, female 42.0
GTEX-PX3G-2526-SM-48TZV 20-29 years, female 41.8
GTEX-14BMU-1926-SM-5S2QC 20-29 years, female 40.6
GTEX-1R9JW-1426-SM-DTX9K 30-39 years, female 39.7
GTEX-TMMY-1926-SM-4DXUU 40-49 years, female 38.9
GTEX-XV7Q-1626-SM-4BRWC 40-49 years, female 38.4
GTEX-16NPV-2526-SM-6M483 50-59 years, female 38.0
GTEX-146FH-2626-SM-5Q5E1 50-59 years, female 37.5
GTEX-R45C-2226-SM-GQ1EF 60-69 years, female 37.0
GTEX-ZTPG-2226-SM-57WF9 20-29 years, female 36.4
GTEX-S4P3-1126-SM-4AD52 50-59 years, female 36.2
GTEX-146FR-2426-SM-5NQAU 60-69 years, female 35.1
GTEX-17JCI-2526-SM-7DHLB 60-69 years, female 35.1
GTEX-13QIC-1826-SM-5J1MY 60-69 years, female 34.2
GTEX-TSE9-2526-SM-4DXUS 60-69 years, female 34.0
GTEX-WYVS-1426-SM-4ONCV 40-49 years, female 33.9
GTEX-X15G-1926-SM-4PQZQ 50-59 years, female 33.8
GTEX-P4PP-2526-SM-3P61P 30-39 years, female 32.7
GTEX-1GN1U-2426-SM-9KNTU 50-59 years, female 31.8
GTEX-16MT8-2426-SM-GQ1DK 60-69 years, female 31.5
GTEX-WI4N-2626-SM-GPI8F 40-49 years, female 30.8
GTEX-13PVR-1426-SM-5S2PW 60-69 years, female 30.7
GTEX-PLZ4-2726-SM-3P61A 50-59 years, female 30.3
GTEX-OHPL-2526-SM-3MJGT 60-69 years, female 29.4
GTEX-1PIEJ-1926-SM-EVYB7 20-29 years, female 28.7
GTEX-QDT8-2526-SM-48TYX 30-39 years, female 28.5
GTEX-ZE7O-2426-SM-57WD7 50-59 years, female 27.3
GTEX-ZVZQ-2726-SM-GPRY1 60-69 years, female 26.7
GTEX-13U4I-2026-SM-5LU3L 40-49 years, female 26.0
GTEX-OHPN-2426-SM-E9TI5 60-69 years, female 25.0
GTEX-ZGAY-2226-SM-4YCCX 40-49 years, female 25.0
GTEX-XUZC-1226-SM-4BRVJ 30-39 years, female 24.7
GTEX-ZQG8-1126-SM-51MRL 60-69 years, female 24.0
GTEX-ZYVF-0326-SM-5GIES 50-59 years, female 23.9
GTEX-1GMR8-2526-SM-7RHI9 50-59 years, female 23.8
GTEX-NPJ7-2526-SM-EV79A 60-69 years, female 21.3
GTEX-131YS-2426-SM-5J2OD 60-69 years, female 20.6
GTEX-ZV6S-1326-SM-59HJA 40-49 years, female 19.9
GTEX-12ZZX-1926-SM-5EGKC 40-49 years, female 19.8
GTEX-1I4MK-1726-SM-ARL7O 50-59 years, female 19.5
GTEX-1I1GT-1226-SM-B2LVK 60-69 years, female 19.3
GTEX-1F48J-2526-SM-7P8TU 50-59 years, female 19.2
GTEX-1IE54-2626-SM-CMKFY 40-49 years, female 18.8
GTEX-1QCLZ-2226-SM-DTX7R 60-69 years, female 18.8
GTEX-1HFI7-1126-SM-A96S5 50-59 years, female 18.3
GTEX-RWS6-1726-SM-47JXP 60-69 years, female 18.3
GTEX-O5YV-2226-SM-HM8V7 60-69 years, female 18.0
GTEX-W5WG-1026-SM-4LMIF 50-59 years, female 17.8
GTEX-1LGRB-2126-SM-COH48 50-59 years, female 17.0
GTEX-1MCC2-1126-SM-EVYD6 30-39 years, female 16.8
GTEX-RU1J-1426-SM-46MUV 20-29 years, female 16.1
GTEX-15DYW-2926-SM-6PANA 60-69 years, female 16.0
GTEX-UJHI-1326-SM-4IHJO 50-59 years, female 16.0
GTEX-14PJM-2926-SM-69LOE 50-59 years, female 15.6
GTEX-183WM-2126-SM-7LG4I 70-79 years, female 15.3
GTEX-12WSJ-1326-SM-5GCOB 40-49 years, female 14.4
GTEX-13W3W-2326-SM-5LU4Y 60-69 years, female 14.3
GTEX-OXRK-2026-SM-GOQY5 50-59 years, female 14.2
GTEX-ZVT3-2726-SM-5GU5X 60-69 years, female 13.7
GTEX-1JN1M-2326-SM-ARZNG 60-69 years, female 13.6
GTEX-15UF6-2126-SM-6M46Z 70-79 years, female 13.4
GTEX-1QPFJ-1626-SM-DTX7X 30-39 years, female 12.2
GTEX-14DAQ-2326-SM-5S2QX 60-69 years, female 12.0
GTEX-WRHU-2926-SM-4MVNQ 50-59 years, female 11.7
GTEX-WEY5-0826-SM-4LMIH 40-49 years, female 11.5
GTEX-1EWIQ-2326-SM-7IGNF 70-79 years, female 10.3
GTEX-145LS-2526-SM-5TDC9 60-69 years, female 10.1
GTEX-13N11-1526-SM-5L3FL 50-59 years, female 9.7
GTEX-147F3-1526-SM-5MR7L 50-59 years, female 9.0
GTEX-11GSP-2226-SM-5HL5Q 60-69 years, female 8.2
GTEX-RTLS-2126-SM-GPRWH 60-69 years, female 7.8
GTEX-WYBS-2826-SM-GOQYI 60-69 years, female 7.6
GTEX-ZAK1-2426-SM-EXOHM 50-59 years, female 7.6
GTEX-YFC4-2926-SM-5IFJ8 40-49 years, female 6.8
GTEX-13OVI-0926-SM-5J1MI 60-69 years, female 6.6
GTEX-12WSD-2926-SM-5LZUH 60-69 years, female 6.3
GTEX-11EM3-1826-SM-5A5KO 20-29 years, female 6.2
GTEX-13FTY-2026-SM-GIN9K 40-49 years, female 5.7
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VAGINA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

80.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Vagina
Scaled Tags Per Million: 80.3
FF:10204-103F6 68 years, female 80.3

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