Breast cancer Breast Invasive Carcinoma (BRCA)

Breast cancer

The upper left dot plot(s) shows the consistency between the cancer type related cell lines and their corresponding TCGA disease cohort based on Spearman correlation and normalized enrichment score (NES). In the lower left is a list of the cell lines ranked according to their similarity to the cancer type. By clicking on a cell line in the dot plot or in the ranked list lollipop plots showing the activity of cancer-related pathways inferred using PROGENy and CytoSig cytokines for that particular cell line will be displayed. For more details about the analysis see Methods summary and information about all cell lines can be found here.

Breast Invasive Carcinoma (BRCA)

Explore the disease cohort in TCGA

Ranking	Cell line	Corr	NES
1	BT-483	0.8	2.22
2	MDA-MB-361	0.79	2.11
3	CAMA-1	0.79	2.06
4	HCC1500	0.79	2.13
5	EFM-19	0.79	2.08
6	MDA-MB-175-VII	0.79	1.98
6	UACC-812	0.79	2.02
8	ZR-75-30	0.8	1.89
9	MDA-MB-415	0.79	1.94
10	ZR-75-1	0.78	2
10	EFM-192A	0.8	1.83
12	T-47d	0.78	2
12	BT-474	0.79	1.88
14	MCF-7	0.78	2.05
15	HCC2911	0.78	2.04
16	UACC-893	0.78	1.91
16	HCC2218	0.79	1.8
18	HCC1428	0.78	1.95
19	HCC1419	0.78	1.93
20	KPL-1	0.77	1.96
21	MDA-MB-468	0.78	1.7
22	MDA-MB-134-VI	0.76	2.09
23	HCC2688	0.78	1.79
23	HCC70	0.79	1.48
23	HCC1954	0.78	1.5
26	YMB-1	0.77	1.88
27	SK-BR-3	0.78	1.56
28	CAL-148	0.78	1.56
29	HCC1187	0.77	1.71
30	HCC2157	0.77	1.85
30	HCC38	0.78	1.41
32	CAL-85-1	0.78	1.36
33	HCC1569	0.77	1.75
34	MDA-MB-330	0.77	1.8
34	HCC1599	0.77	1.72
34	HCC202	0.77	1.7
37	MDA-MB-453	0.77	1.73
38	AU565	0.77	1.55
39	HCC1937	0.78	1.28
40	HDQ-P1	0.77	1.27
41	SUM52PE	0.75	1.8
41	HCC1143	0.77	1.23
43	MX-1	0.76	1.57
44	HCC1395	0.77	1.2
45	MFM-223	0.76	1.66
46	JIMT-1	0.77	0.95
47	Evsa-T	0.74	1.69
48	Hs 578T	0.75	1.41
49	HCC1806	0.77	0.7
49	BT-20	0.76	1.13
51	CAL-51	0.76	1.25
52	BT-549	0.76	1.19
53	CAL-120	0.75	1.25
53	MDA-MB-231	0.76	0.78
55	HCC1493	0.76	0.88
56	SUM149PT	0.76	0.92
57	DU4475	0.71	1.26
57	MDA-MB-157	0.75	1.13
59	MDA-MB-436	0.76	0.59
60	SUM1315MO2	0.73	1.01
61	SUM159PT	0.74	0.9
62	HMC-1-8	0.73	0.76

CELL LINE DATA
Cell line	BT-483
Patient:	Female, 23
Disease subtype:	Breast Ductal Carcinoma
Primary/metastasis:	Primary
Sample collection site:	Breast
Cellosaurus:	CVCL_2319
PROGENy

CytoSig