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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
h
m
l
n
Glial cells:
Low
Neuronal cells:
High
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
21.0
nTPM
HPA Brain:
13.8
nTPM
GTEx:
21.0
nTPM
FANTOM5:
29.1
Scaled Tags Per Million
Pig:
9.6
nTPM
Mouse:
11.3
nTPM
Allen mouse:
2.2
Expression energy
HIPPOCAMPUS - Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
Antibody HPA004940
Glial cells
Low
Neuronal cells
High
HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
13.8
Sample id
Sample description
nTPM
Hippocampus nTPM: 13.3
2529
Female, age 94, left hemisphere
15.8
2621
Female, age 67, right hemisphere
15.8
1855
Male, age 76, left hemisphere
13.1
1911
Female, age 85, right hemisphere
12.2
1898
Male, age 80, left hemisphere
11.8
2148
Female, age 91, left hemisphere
11.0
Dentate gyrus nTPM: 11.9
2530
Female, age 94, left hemisphere
20.0
2246
Female, age 85, both hemispheres
11.7
2010
Male, age 76, both hemispheres
11.5
2531
Female, age 67, both hemispheres
10.7
2528
Male, age 74, both hemispheres
10.3
1927
Female, age 91, both hemispheres
7.2
Entorhinal gyrus nTPM: 11.9
2117
Female, age 91, right hemisphere
14.4
1787
Male, age 76, left hemisphere
12.0
1938
Female, age 85, left hemisphere
12.0
2686
Male, age 75, right hemisphere
11.8
2764
Male, age 80, right hemisphere
11.8
2613
Female, age 94, left hemisphere
9.5
Hippocampus, CA1 nTPM: 10.8
2527
Male, age 74, both hemispheres
13.9
2749
Male, age 80, left hemisphere
12.4
1873
Female, age 85, both hemispheres
12.0
2082
Female, age 91, right hemisphere
10.2
2045
Male, age 76, both hemispheres
5.3
Hippocampus, CA2 nTPM: 11.9
1940
Female, age 85, left hemisphere
12.5
1963
Male, age 80, left hemisphere
12.0
1892
Male, age 76, both hemispheres
11.9
2113
Female, age 91, right hemisphere
11.8
2437
Female, age 94, left hemisphere
11.6
2249
Male, age 74, both hemispheres
11.5
Hippocampus, CA3 nTPM: 10.6
1867
Male, age 76, both hemispheres
13.2
1891
Female, age 85, both hemispheres
13.2
2861
Female, age 67, both hemispheres
11.2
2137
Male, age 80, left hemisphere
10.9
2436
Male, age 74, both hemispheres
8.9
2620
Female, age 94, left hemisphere
6.1
Parahippocampal cortex nTPM: 11.0
2692
Male, age 74, both hemispheres
13.1
2532
Female, age 72, left hemisphere
13.0
2245
Female, age 91, both hemispheres
12.5
2622
Female, age 67, right hemisphere
11.8
2018
Male, age 76, both hemispheres
11.7
1850
Male, age 80, both hemispheres
10.3
1990
Female, age 91, right hemisphere
10.0
1933
Female, age 85, both hemispheres
9.9
2250
Female, age 67, right hemisphere
9.9
2693
Female, age 94, both hemispheres
8.1
Perirhinal gyrus nTPM: 10.5
1794
Male, age 80, right hemisphere
11.9
1841
Female, age 85, right hemisphere
11.5
1847
Female, age 91, left hemisphere
10.7
2848
Male, age 76, right hemisphere
9.5
2521
Female, age 94, right hemisphere
8.8
Subiculum nTPM: 13.8
2438
Female, age 94, left hemisphere
19.3
2042
Male, age 76, both hemispheres
16.4
1901
Male, age 80, both hemispheres
13.8
1977
Female, age 85, both hemispheres
12.6
2619
Male, age 74, both hemispheres
11.7
2729
Female, age 91, right hemisphere
8.9
HIPPOCAMPAL FORMATION - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
21.0
GTEx sample id
Sample description
nTPM
Brain - Hippocampus Average nTPM: 21.0
Samples: 197
Max nTPM: 55.1
Min nTPM: 11.5
Std nTPM: 7.3
Median nTPM: 18.8
GTEX-17HG3-0011-R1a-SM-7LG6H
30-39 years, female
55.1
GTEX-16GPK-0011-R1b-SM-7EWDH
60-69 years, male
51.7
GTEX-13NZ8-0011-R1b-SM-5KM3V
60-69 years, female
46.8
GTEX-1HSMO-0011-R1a-SM-CM2SV
60-69 years, male
45.4
GTEX-144GO-0011-R1a-SM-5PNWO
60-69 years, male
41.5
GTEX-16NPV-0011-R1b-SM-7MGVZ
50-59 years, female
40.3
GTEX-1H4P4-0011-R1b-SM-CL54V
50-59 years, male
40.2
GTEX-1HR98-0011-R1a-SM-ARZLQ
60-69 years, male
39.3
GTEX-1E1VI-0011-R1a-SM-ARZMM
50-59 years, male
36.6
GTEX-13QJC-0011-R1b-SM-5S2UU
60-69 years, female
35.3
GTEX-13NYS-0011-R1b-SM-5MR55
60-69 years, male
35.0
GTEX-1H23P-0011-R1a-SM-ACKVC
60-69 years, male
33.9
GTEX-13RTJ-0011-R1a-SM-5O9D9
60-69 years, male
33.1
GTEX-1F6IF-0011-R1b-SM-9WG78
60-69 years, male
33.1
GTEX-13NYB-0011-R1b-SM-5KM4F
40-49 years, male
32.3
GTEX-183WM-0011-R1a-SM-718A8
70-79 years, female
32.2
GTEX-1CB4J-0011-R1a-SM-9WG64
60-69 years, male
31.8
GTEX-1C6VQ-0011-R1a-SM-7P8Q2
50-59 years, male
31.2
GTEX-1A32A-0011-R1a-SM-7P8SQ
50-59 years, female
30.0
GTEX-1HGF4-0011-R1a-SM-CJI3S
60-69 years, male
29.9
GTEX-13OW5-0011-R1b-SM-5L3GE
60-69 years, male
29.7
GTEX-13RTL-0011-R1a-SM-5PNZ8
40-49 years, male
29.3
GTEX-1CAV2-0011-R1a-SM-ARZML
40-49 years, female
29.0
GTEX-NL3H-0011-R1a-SM-48TDJ
60-69 years, male
28.9
GTEX-18A6Q-0011-R1b-SM-731DI
60-69 years, male
28.6
GTEX-11ZTS-0011-R1a-SM-5BC71
60-69 years, female
28.2
GTEX-11TUW-0011-R1a-SM-DO92S
60-69 years, male
27.9
GTEX-X4EP-0011-R1A-SM-3P624
60-69 years, female
27.3
GTEX-14LZ3-0011-R1a-SM-69LP5
60-69 years, female
26.7
GTEX-13PDP-0011-R1a-SM-5PNX5
60-69 years, male
26.5
GTEX-1H3VE-0011-R1a-SM-A9G1K
40-49 years, male
26.5
GTEX-XMD1-0011-R1A-SM-4AT4C
60-69 years, male
26.4
GTEX-ZE7O-0011-R1a-SM-57WDM
50-59 years, female
26.4
GTEX-N7MT-0011-R1a-SM-CNPO1
60-69 years, female
25.7
GTEX-1B996-0011-R1b-SM-7P8PO
60-69 years, male
25.6
GTEX-13NZA-0011-R1b-SM-5LUAF
60-69 years, male
25.5
GTEX-1E2YA-0011-R1b-SM-CJI29
50-59 years, male
25.5
GTEX-1HT8W-0011-R1b-SM-CJI3V
30-39 years, male
25.5
GTEX-17HII-0011-R1b-SM-7MGVW
50-59 years, male
25.4
GTEX-17MF6-0011-R1a-SM-72D6O
40-49 years, male
25.3
GTEX-QVUS-0011-R1A-SM-3GAD2
60-69 years, female
25.3
GTEX-ZVZQ-0011-R1a-SM-57WBU
60-69 years, female
25.3
GTEX-PWO3-0011-R1A-SM-2I5EW
60-69 years, female
25.2
GTEX-145LU-0011-R1a-SM-5Q5CE
50-59 years, male
25.1
GTEX-1399T-0011-R1b-SM-5DUWN
60-69 years, male
25.0
GTEX-UTHO-0011-R1A-SM-3GIJO
60-69 years, male
24.9
GTEX-1J8Q2-0011-R1a-SM-D4P2D
60-69 years, male
24.9
GTEX-1HBPI-0011-R1b-SM-A9SKF
50-59 years, male
24.6
GTEX-1H1CY-0011-R1a-SM-CKZOZ
60-69 years, female
24.3
GTEX-1GTWX-0011-R1a-SM-CE6RL
60-69 years, male
24.2
GTEX-17EVQ-0011-R1a-SM-7189S
70-79 years, male
23.9
GTEX-13FTY-0011-R1a-SM-5LZXE
40-49 years, female
23.8
GTEX-13S7M-0011-R1b-SM-5PNZE
60-69 years, female
23.6
GTEX-ZF28-0011-R1a-SM-4WWD1
60-69 years, male
23.5
GTEX-1GN2E-0011-R1b-SM-CE6RJ
60-69 years, male
23.5
GTEX-1EX96-0011-R1a-SM-CE6R5
50-59 years, male
23.4
GTEX-1I1GV-0011-R1a-SM-CL559
60-69 years, male
23.4
GTEX-132Q8-0011-R1a-SM-5EGLK
60-69 years, male
23.1
GTEX-15UF6-0011-R1a-SM-9QEGH
70-79 years, female
23.0
GTEX-1EH9U-0011-R1b-SM-CJI2B
60-69 years, male
23.0
GTEX-X4XX-0011-R1B-SM-3P622
60-69 years, male
22.9
GTEX-T6MN-0011-R1A-SM-32QOY
50-59 years, male
22.8
GTEX-14PQA-0011-R1b-SM-6EU1G
50-59 years, female
22.7
GTEX-13QIC-0011-R1a-SM-5O9CJ
60-69 years, female
22.4
GTEX-14PJO-0011-R1b-SM-6AJAK
60-69 years, male
22.4
GTEX-1LG7Y-0011-R1a-SM-EYYWV
50-59 years, male
22.3
GTEX-11UD1-0011-R1b-SM-5BC7D
40-49 years, female
22.0
GTEX-TSE9-0011-R1A-SM-3DB7E
60-69 years, female
21.8
GTEX-13FHO-0011-R1b-SM-5KLZG
60-69 years, male
21.6
GTEX-1GF9V-0011-R1a-SM-CKZNQ
60-69 years, male
21.4
GTEX-12WSH-0011-R1a-SM-5GU5V
50-59 years, male
21.3
GTEX-13N1W-0011-R1b-SM-5MR4T
70-79 years, male
21.3
GTEX-13FXS-0011-R1a-SM-5K7U6
50-59 years, male
21.2
GTEX-13OW7-0011-R1b-SM-5L3HF
50-59 years, male
21.2
GTEX-13JUV-0011-R1a-SM-5LZY4
40-49 years, female
21.1
GTEX-139T8-0011-R1a-SM-5HL75
60-69 years, male
21.0
GTEX-1H1DG-0011-R1b-SM-CKZP1
70-79 years, male
21.0
GTEX-1H3O1-0011-R1b-SM-CL554
60-69 years, male
20.9
GTEX-13JVG-0011-R1a-SM-5KM32
60-69 years, male
20.8
GTEX-QMR6-0011-R1A-SM-32PKW
50-59 years, male
20.8
GTEX-1F75W-0011-R1a-SM-ARU81
60-69 years, male
20.8
GTEX-14LLW-0011-R1a-SM-5ZZVD
70-79 years, female
20.7
GTEX-1LB8K-0011-R1b-SM-EZ6MV
50-59 years, male
20.5
GTEX-13CF2-0011-R1a-SM-5LZY1
60-69 years, male
20.1
GTEX-P44H-0011-R1A-SM-3NM8J
40-49 years, male
20.0
GTEX-13FHP-0011-R1b-SM-5K7XL
50-59 years, male
19.9
GTEX-17F97-0011-R1b-SM-7IGM9
50-59 years, male
19.5
GTEX-1IOXB-0011-R1a-SM-D4P27
50-59 years, male
19.5
GTEX-12WSF-0011-R1a-SM-5DUVI
70-79 years, male
19.4
GTEX-OHPN-0011-R1A-SM-2I5GB
60-69 years, female
19.4
GTEX-1212Z-0011-R1b-SM-5BC72
60-69 years, male
19.3
GTEX-1GF9W-0011-R1a-SM-9QEIQ
60-69 years, male
19.3
GTEX-1313W-0011-R1b-SM-5EQ4A
50-59 years, female
19.2
GTEX-13OVJ-0011-R1b-SM-5L3I6
50-59 years, female
19.0
GTEX-14BIM-0011-R1a-SM-69LQI
60-69 years, female
19.0
GTEX-15DCD-0011-R1b-SM-6LPIJ
70-79 years, female
19.0
GTEX-145LS-0011-R1b-SM-5PNUP
60-69 years, female
18.9
GTEX-1GMR8-0011-R1b-SM-CJI2O
50-59 years, female
18.8
GTEX-1GN73-0011-R1a-SM-CKZNT
60-69 years, male
18.8
GTEX-11ZVC-0011-R1b-SM-5BC6M
50-59 years, female
18.7
GTEX-13O3Q-0011-R1b-SM-5KM3L
50-59 years, male
18.7
GTEX-13OW6-0011-R1a-SM-5L3HQ
50-59 years, male
18.7
GTEX-1C6VR-0011-R1a-SM-7MXUE
60-69 years, male
18.7
GTEX-12WSM-0011-R1a-SM-5LZW6
60-69 years, male
18.6
GTEX-13OVL-0011-R1a-SM-5L3H5
50-59 years, male
18.6
GTEX-17EVP-0011-R1a-SM-7DHLA
40-49 years, male
18.6
GTEX-NPJ8-0011-R1a-SM-33HCB
40-49 years, male
18.6
GTEX-1A8G6-0011-R1a-SM-7P8PC
60-69 years, male
18.5
GTEX-T5JC-0011-R1A-SM-32PM6
20-29 years, male
18.4
GTEX-11GSO-0011-R1b-SM-57WD3
60-69 years, male
18.2
GTEX-1BAJH-0011-R1a-SM-7P8SV
70-79 years, male
18.2
GTEX-11EI6-0011-R1a-SM-DO93L
60-69 years, male
18.1
GTEX-14PJM-0011-R1a-SM-CNPO3
50-59 years, female
18.1
GTEX-17JCI-0011-R1b-SM-718A3
60-69 years, female
17.9
GTEX-1GZ2Q-0011-R1a-SM-CJI2Y
40-49 years, male
17.9
GTEX-13OW8-0011-R1a-SM-5L3HI
60-69 years, male
17.8
GTEX-17HHY-0011-R1a-SM-7189V
50-59 years, male
17.7
GTEX-QVJO-0011-R1A-SM-2S1QI
60-69 years, female
17.7
GTEX-1B933-0011-R1b-SM-9QEGW
50-59 years, female
17.7
GTEX-1GZHY-0011-R1a-SM-CE6RR
50-59 years, female
17.7
GTEX-16XZZ-0011-R1a-SM-7LTAH
60-69 years, male
17.6
GTEX-1B8SF-0011-R1b-SM-7P8Q8
60-69 years, male
17.4
GTEX-1C64N-0011-R1b-SM-7P8Q7
50-59 years, male
17.4
GTEX-1CB4G-0011-R1b-SM-9QEHT
60-69 years, male
17.4
GTEX-1F48J-0011-R1a-SM-9QEIC
50-59 years, female
17.4
GTEX-13112-0011-R1b-SM-5HL7K
50-59 years, male
17.3
GTEX-ZUA1-0011-R1a-SM-4YCE2
40-49 years, male
17.2
GTEX-WHSE-0011-R1A-SM-3P5ZK
20-29 years, male
17.1
GTEX-16Z82-0011-R1b-SM-7EPHZ
60-69 years, male
17.0
GTEX-1H3NZ-0011-R1a-SM-CKZP5
60-69 years, male
17.0
GTEX-14E6D-0011-R1b-SM-5YYAW
50-59 years, male
16.9
GTEX-15ER7-0011-R1b-SM-7KUE1
20-29 years, female
16.9
GTEX-N7MS-0011-R1a-SM-2HMJG
60-69 years, male
16.9
GTEX-1F6I4-0011-R1a-SM-9OSWU
60-69 years, male
16.9
GTEX-13SLW-0011-R1a-SM-5S2W7
70-79 years, male
16.8
GTEX-NPJ7-0011-R1a-SM-3GACT
60-69 years, female
16.8
GTEX-PVOW-0011-R1A-SM-32PL6
40-49 years, male
16.8
GTEX-WWYW-0011-R1A-SM-3TW8G
50-59 years, female
16.8
GTEX-11DXW-0011-R1a-SM-DNZZD
40-49 years, male
16.8
GTEX-13O3O-0011-R1b-SM-5KM2K
60-69 years, female
16.7
GTEX-13X6I-0011-R1b-SM-5PNZC
60-69 years, male
16.7
GTEX-1IKK5-0011-R1b-SM-CE6SQ
60-69 years, male
16.7
GTEX-1GN1U-0011-R1a-SM-CJI25
50-59 years, female
16.6
GTEX-11WQC-0011-R1b-SM-DO932
60-69 years, male
16.2
GTEX-1A3MX-0011-R1b-SM-7P8PH
60-69 years, male
16.2
GTEX-1EKGG-0011-R1b-SM-9QEI1
60-69 years, male
16.2
GTEX-WL46-0011-R1A-SM-3LK6M
50-59 years, male
16.1
GTEX-1F75A-0011-R1b-SM-CE6RA
50-59 years, male
16.1
GTEX-14PN4-0011-R1b-SM-69LP8
50-59 years, male
15.9
GTEX-12ZZX-0011-R1a-SM-5EQ6B
40-49 years, female
15.8
GTEX-14ABY-0011-R1a-SM-6EU2W
50-59 years, male
15.8
GTEX-15CHQ-0011-R1a-SM-COH27
60-69 years, male
15.8
GTEX-ZAB4-0011-R1a-SM-4RGNO
40-49 years, male
15.7
GTEX-1AX9I-0011-R1b-SM-7RHG2
60-69 years, male
15.5
GTEX-1HSKV-0011-R1b-SM-CMKH7
60-69 years, male
15.5
GTEX-14E7W-0011-R1b-SM-5YYAT
70-79 years, male
15.4
GTEX-1B8L1-0011-R1a-SM-7P8SS
60-69 years, male
15.2
GTEX-1J1OQ-0011-R1a-SM-A9G1Z
40-49 years, female
15.2
GTEX-Q2AG-0011-R1A-SM-2HMJI
40-49 years, female
15.1
GTEX-WZTO-0011-R1B-SM-3NMAR
40-49 years, male
15.1
GTEX-11ONC-0011-R1a-SM-57WD4
60-69 years, male
14.9
GTEX-139TT-0011-R1a-SM-5LZVD
60-69 years, male
14.9
GTEX-14JIY-0011-R1a-SM-68713
60-69 years, male
14.9
GTEX-ZDXO-0011-R1a-SM-4WKF4
60-69 years, male
14.9
GTEX-1I1GQ-0011-R1a-SM-CY8GG
50-59 years, male
14.9
GTEX-1EMGI-0011-R1b-SM-9OSWZ
60-69 years, male
14.8
GTEX-1I1GS-0011-R1a-SM-CJI43
60-69 years, male
14.8
GTEX-P44G-0011-R1A-SM-2I3FE
30-39 years, male
14.7
GTEX-11GSP-0011-R1a-SM-9QEJ3
60-69 years, female
14.6
GTEX-13FLW-0011-R1b-SM-5LZX2
50-59 years, male
14.5
GTEX-13N2G-0011-R1b-SM-5MR3G
60-69 years, male
14.5
GTEX-144GL-0011-R1a-SM-5PNZ5
50-59 years, male
14.5
GTEX-1IY9M-0011-R1a-SM-EXURZ
60-69 years, male
14.5
GTEX-131YS-0011-R1a-SM-5DUXC
60-69 years, female
14.4
GTEX-X585-0011-R1B-SM-46MVE
50-59 years, male
14.4
GTEX-YFC4-0011-R1a-SM-4V6EH
40-49 years, female
14.3
GTEX-13G51-0011-R1a-SM-5LZYR
60-69 years, male
14.2
GTEX-1ICLZ-0011-R1b-SM-A9SM3
60-69 years, male
14.0
GTEX-1EWIQ-0011-R1a-SM-9OSX7
70-79 years, female
13.8
GTEX-QDT8-0011-R1A-SM-32PKS
30-39 years, female
13.7
GTEX-WVLH-0011-R1A-SM-4MVOK
50-59 years, male
13.7
GTEX-Y8DK-0011-R1A-SM-4RGLO
60-69 years, male
13.7
GTEX-12WSD-0011-R1b-SM-5LZVY
60-69 years, female
13.6
GTEX-145MH-0011-R1b-SM-5PNWY
50-59 years, male
13.6
GTEX-16YQH-0011-R1a-SM-7LT8R
30-39 years, male
13.6
GTEX-1H1ZS-0011-R1b-SM-A9G1E
70-79 years, male
13.5
GTEX-1I1HK-0011-R1b-SM-CM2T7
60-69 years, male
13.5
GTEX-14C5O-0011-R1b-SM-6AJBW
60-69 years, male
13.4
GTEX-YJ89-0011-R1a-SM-4RGLS
60-69 years, male
13.3
GTEX-RNOR-0011-R1A-SM-CNNP5
50-59 years, female
13.2
GTEX-1IDJH-0011-R1b-SM-ARU6U
70-79 years, male
13.0
GTEX-R55E-0011-R1A-SM-2TC6N
20-29 years, male
12.8
GTEX-12WSE-0011-R1b-SM-5GU4V
20-29 years, male
12.4
GTEX-14ASI-0011-R1b-SM-5S2TY
60-69 years, male
12.2
GTEX-S7SE-0011-R1A-SM-2XCDE
50-59 years, male
11.9
GTEX-131XH-0011-R1a-SM-5DUWA
50-59 years, male
11.6
GTEX-11GS4-0011-R1a-SM-DO129
60-69 years, male
11.5
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
11.3
Mouse sample
Sample description
nTPM
Entorhinal cortex nTPM: 11.2
Samples: 4
Max nTPM: 11.4
Min nTPM: 11.0
Sample A
Male
11.0
Sample B
Male
11.0
Sample C
Female
11.4
Sample D
Female
11.4
Hippocampal formation nTPM: 11.3
Samples: 4
Max nTPM: 12.2
Min nTPM: 9.8
Sample A
Male
11.5
Sample B
Male
12.2
Sample C
Female
11.6
Sample D
Female
9.8
HIPPOCAMPAL FORMATION - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.