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A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
20.8
nTPM
Monaco:
43.5
nTPM
Schmiedel:
14.5
TPM
T-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
20.8
HPA sample
nTPM
gdT-cell nTPM: 20.8
Samples: 6
Max nTPM: 25.8
Min nTPM: 16.0
P10809_1007
16.0
P10809_1022
23.6
P10809_1041
17.7
P10809_1060
18.2
P10809_1077
25.8
P10809_1098
23.5
MAIT T-cell nTPM: 12.7
Samples: 6
Max nTPM: 18.0
Min nTPM: 6.8
P10809_1006
6.8
P10809_1024
13.3
P10809_1043
12.0
P10809_1062
14.8
P10809_1083
11.2
P10809_1097
18.0
Memory CD4 T-cell nTPM: 14.5
Samples: 6
Max nTPM: 22.4
Min nTPM: 10.2
P10809_1014
10.2
P10809_1026
11.7
P10809_1045
14.3
P10809_1064
16.3
P10809_1086
22.4
P10809_1113
12.3
Memory CD8 T-cell nTPM: 14.4
Samples: 5
Max nTPM: 17.3
Min nTPM: 12.4
P10809_1012
12.4
P10809_1027
15.9
P10809_1046
13.8
P10809_1065
17.3
P10809_1111
12.4
Naive CD4 T-cell nTPM: 14.1
Samples: 6
Max nTPM: 18.3
Min nTPM: 8.8
P10809_1015
9.1
P10809_1030
8.8
P10809_1049
18.3
P10809_1068
18.2
P10809_1085
16.4
P10809_1112
13.9
Naive CD8 T-cell nTPM: 12.2
Samples: 6
Max nTPM: 19.0
Min nTPM: 6.6
P10809_1016
7.5
P10809_1031
6.6
P10809_1050
11.6
P10809_1069
19.0
P10809_1087
17.3
P10809_1110
11.0
T-reg nTPM: 2.3
Samples: 6
Max nTPM: 4.3
Min nTPM: 0.0
P10809_1018
3.7
P10809_1037
4.3
P10809_1056
0.0
P10809_1075
0.4
P10809_1094
4.1
P10809_1106
1.2
T-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
43.5
Monaco sample
nTPM
Central memory CD8 T-cell nTPM: 24.2
Samples: 4
Max nTPM: 29.8
Min nTPM: 20.0
RHH5202_R3573
29.8
RHH5230_R3602
20.0
RHH5259_R3631
20.6
RHH5288_R3660
26.5
Effector memory CD8 T-cell nTPM: 19.9
Samples: 4
Max nTPM: 30.1
Min nTPM: 14.1
RHH5203_R3574
16.2
RHH5231_R3603
30.1
RHH5260_R3632
19.3
RHH5289_R3661
14.1
MAIT T-cell nTPM: 25.3
Samples: 4
Max nTPM: 32.1
Min nTPM: 19.9
RHH5233_R3605
19.9
RHH5205_R3576
24.0
RHH5262_R3634
32.1
RHH5297_R3663
25.1
Memory CD4 T-cell TFH nTPM: 22.9
Samples: 4
Max nTPM: 32.0
Min nTPM: 19.0
RHH5300_R3666
19.0
RHH5236_R3608
32.0
RHH5265_R3637
21.4
RHH5208_R3579
19.1
Memory CD4 T-cell Th1 nTPM: 22.6
Samples: 4
Max nTPM: 28.9
Min nTPM: 11.8
RHH5210_R3581
25.5
RHH5302_R3668
24.2
RHH5238_R3610
11.8
RHH5267_R3639
28.9
Memory CD4 T-cell Th1/Th17 nTPM: 30.0
Samples: 4
Max nTPM: 52.6
Min nTPM: 14.9
RHH5303_R3669
52.6
RHH5211_R3582
28.9
RHH5239_R3611
14.9
RHH5268_R3640
23.4
Memory CD4 T-cell Th17 nTPM: 23.1
Samples: 4
Max nTPM: 34.4
Min nTPM: 15.2
RHH5304_R3670
22.4
RHH5212_R3583
34.4
RHH5240_R3612
20.2
RHH5269_R3641
15.2
Memory CD4 T-cell Th2 nTPM: 23.2
Samples: 4
Max nTPM: 31.8
Min nTPM: 17.3
RHH5305_R3671
19.0
RHH5213_R3584
31.8
RHH5241_R3613
24.6
RHH5270_R3642
17.3
Naive CD4 T-cell nTPM: 23.4
Samples: 4
Max nTPM: 29.8
Min nTPM: 18.3
RHH5306_R3672
26.5
RHH5214_R3585
29.8
RHH5242_R3614
19.0
RHH5271_R3643
18.3
Naive CD8 T-cell nTPM: 15.2
Samples: 4
Max nTPM: 23.2
Min nTPM: 5.8
RHH5201_R3572
23.2
RHH5229_R3601
5.8
RHH5258_R3630
14.4
RHH5287_R3659
17.5
Non-Vd2 gdTCR nTPM: 30.0
Samples: 4
Max nTPM: 61.1
Min nTPM: 14.6
RHH5235_R3607
18.6
RHH5264_R3636
25.8
RHH5207_R3578
61.1
RHH5299_R3665
14.6
T-reg nTPM: 18.7
Samples: 4
Max nTPM: 30.0
Min nTPM: 9.9
RHH5301_R3667
9.9
RHH5237_R3609
30.0
RHH5266_R3638
18.5
RHH5209_R3580
16.2
Terminal effector memory CD4 T-cell nTPM: 33.8
Samples: 2
Max nTPM: 34.6
Min nTPM: 33.0
RHH5243_R3615
33.0
RHH5272_R3644
34.6
Terminal effector memory CD8 T-cell nTPM: 32.8
Samples: 4
Max nTPM: 39.1
Min nTPM: 20.1
RHH5232_R3604
39.1
RHH5204_R3575
20.1
RHH5261_R3633
35.2
RHH5296_R3662
36.6
Vd2 gdTCR nTPM: 43.5
Samples: 4
Max nTPM: 61.6
Min nTPM: 32.7
RHH5234_R3606
37.1
RHH5206_R3577
61.6
RHH5263_R3635
42.5
RHH5298_R3664
32.7
T-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
The Human Protein Atlas project is funded
