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  • DBNDD2
TISSUE PRIMARY DATA AMYGDALA Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
NASOPHARYNX ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Tissue proteome
Amygdala
Tissue methods
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:454.6 nTPM
HPA Brain:459.2 nTPM
GTEx:454.6 nTPM
FANTOM5:205.4 Scaled Tags Per Million
Pig:39.1 nTPM
Mouse:109.9 nTPM
Allen mouse:22.0 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

459.2
Sample id Sample description nTPM
Amygdala
nTPM: 459.2
2814 Male, age 76, right hemisphere 644.2
2514 Male, age 75, right hemisphere 486.1
2695 Female, age 67, right hemisphere 484.0
2517 Female, age 94, left hemisphere 387.4
1987 Female, age 91, left hemisphere 294.5
Basal amygdala
nTPM: 326.6
2827 Female, age 67, right hemisphere 403.2
2685 Female, age 94, left hemisphere 390.9
2110 Male, age 80, left hemisphere 360.1
2609 Male, age 75, right hemisphere 327.1
1955 Male, age 76, both hemispheres 315.4
2243 Female, age 91, right hemisphere 163.1
Central amygdala
nTPM: 384.6
1905 Male, age 76, both hemispheres 491.4
2826 Female, age 94, left hemisphere 481.9
2701 Female, age 91, right hemisphere 329.4
2239 Male, age 80, left hemisphere 318.4
2515 Male, age 75, right hemisphere 301.9
Corticomedial amygdala
nTPM: 232.2
2428 Male, age 75, right hemisphere 319.8
2429 Female, age 94, left hemisphere 273.0
2535 Female, age 67, right hemisphere 240.1
2240 Male, age 76, both hemispheres 237.0
2829 Male, age 80, left hemisphere 209.7
2242 Female, age 91, right hemisphere 113.3
Lateral amygdala
nTPM: 438.6
2830 Female, age 67, right hemisphere 543.5
1883 Male, age 76, both hemispheres 471.7
2516 Male, age 75, right hemisphere 456.6
2256 Male, age 80, left hemisphere 441.1
2534 Female, age 94, left hemisphere 421.2
2255 Female, age 91, right hemisphere 297.6

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

454.6
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 454.6
Samples: 181

Max nTPM: 1979.3
Min nTPM: 135.5
Std nTPM: 248.0
Median nTPM: 379.6
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 1979.3
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 1273.1
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 1204.8
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 1162.6
GTEX-PVOW-0011-R4A-SM-H6Q8O 40-49 years, male 1008.5
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 990.8
GTEX-1NV8Z-0011-R4b-SM-G8LMZ 60-69 years, male 985.7
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 951.8
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 942.6
GTEX-1QP6S-0011-R4b-SM-F33ZY 40-49 years, male 925.7
GTEX-1JJ6O-0011-R4a-SM-EY5YM 60-69 years, male 893.8
GTEX-1PPGY-0011-R4a-SM-F3K4F 60-69 years, male 861.6
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 853.7
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 850.5
GTEX-11ZTS-0011-R4b-SM-GINAQ 60-69 years, female 840.9
GTEX-1POEN-0011-R4b-SM-F3K4O 30-39 years, female 832.0
GTEX-1JN1M-0011-R4b-SM-F6494 60-69 years, female 812.5
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 798.2
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 777.1
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 759.5
GTEX-1JMLX-0011-R4a-SM-EY5YJ 50-59 years, male 755.3
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 739.0
GTEX-ZYY3-0011-R4a-SM-GQ1CY 60-69 years, female 722.0
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 698.3
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 694.4
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 684.6
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 684.6
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 666.9
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 664.5
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 664.1
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 655.4
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 654.4
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 649.5
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 628.8
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 625.9
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 602.0
GTEX-ZZPT-0011-R4a-SM-GPRX4 50-59 years, male 596.9
GTEX-145LU-0011-R4b-SM-5P9K1 50-59 years, male 593.8
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 588.9
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 579.8
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 577.2
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 576.7
GTEX-147F4-0011-R4b-SM-GJ3R4 50-59 years, male 565.9
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 555.0
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 549.8
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 549.0
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 546.5
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 535.9
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 531.0
GTEX-11DYG-0011-R4b-SM-GJ3RG 60-69 years, male 530.0
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 528.2
GTEX-12ZZY-0011-R4a-SM-GIN9F 60-69 years, male 513.5
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 512.9
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 512.1
GTEX-117XS-0011-R4b-SM-GJ3PR 60-69 years, male 510.6
GTEX-1MJK2-0011-R4a-SM-F3426 50-59 years, male 510.0
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 509.0
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 506.2
GTEX-1R46S-0011-R4b-SM-F2TBF 60-69 years, female 505.3
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 498.3
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 495.7
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 481.9
GTEX-1RDX4-0011-R4b-SM-F3K43 50-59 years, female 480.2
GTEX-1RQED-0011-R4b-SM-F2I2X 60-69 years, male 478.3
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 475.8
GTEX-13PLJ-0011-R4b-SM-GJ3R6 60-69 years, female 473.2
GTEX-13QJC-0011-R4a-SM-H65ZP 60-69 years, female 473.2
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 458.9
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 458.4
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 453.9
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 450.4
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 447.9
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 444.3
GTEX-111FC-0011-R4a-SM-GIN8K 60-69 years, male 444.1
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 443.6
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 441.8
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 435.8
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 435.5
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 430.0
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 428.8
GTEX-14C5O-0011-R4b-SM-G9ERF 60-69 years, male 420.8
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 416.8
GTEX-1RQEC-0011-R4b-SM-F342C 60-69 years, male 413.4
GTEX-11NV4-0011-R4a-SM-GI4XC 60-69 years, male 407.6
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 402.1
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 402.0
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 398.8
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 393.5
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 391.2
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 384.9
GTEX-1QMI2-0011-R4b-SM-F3K4R 60-69 years, male 379.6
GTEX-1PWST-0011-R4a-SM-F2T9X 70-79 years, male 375.5
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 373.3
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 372.5
GTEX-11GS4-0011-R4a-SM-GJ3RJ 60-69 years, male 370.2
GTEX-1OJC4-0011-R4a-SM-F3K54 50-59 years, female 369.9
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 369.2
GTEX-1LB8K-0011-R4b-SM-F6487 50-59 years, male 367.1
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 366.2
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 365.9
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 361.0
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 354.7
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 352.1
GTEX-1PIIG-0011-R4a-SM-F2TAQ 30-39 years, male 349.8
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 344.7
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 342.6
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 333.8
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 332.3
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 330.8
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 329.5
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 327.2
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 326.5
GTEX-12WSC-0011-R4a-SM-H6Q8M 50-59 years, male 323.8
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 323.8
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 322.9
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 320.7
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 320.7
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 317.2
GTEX-1117F-0011-R4b-SM-GI4VM 60-69 years, female 316.4
GTEX-1KWVE-0011-R4a-SM-F3K5X 30-39 years, male 314.1
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 313.4
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 313.2
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 311.5
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 311.2
GTEX-1LH75-0011-R4a-SM-F2TAM 50-59 years, female 309.6
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 307.8
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 301.9
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 301.7
GTEX-1JMQK-0011-R4a-SM-G8LLQ 60-69 years, male 300.3
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 299.7
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 298.7
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 296.3
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 295.6
GTEX-1LKK1-0011-R4b-SM-EY5YA 50-59 years, female 295.2
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 293.8
GTEX-13FHO-0011-R4b-SM-H6611 60-69 years, male 293.7
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 291.7
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 289.6
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 289.5
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 288.1
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 286.6
GTEX-11DXY-0011-R4b-SM-GI4VR 60-69 years, male 283.1
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 281.9
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 275.8
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 274.7
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 274.6
GTEX-1RLM8-0011-R4a-SM-F2TBL 50-59 years, male 274.3
GTEX-1O9I2-0011-R4b-SM-F3K4K 50-59 years, male 271.5
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 263.0
GTEX-1N2EF-0011-R4a-SM-F341F 60-69 years, male 262.4
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 257.8
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 255.9
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 255.0
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 251.9
GTEX-1LVA9-0011-R4a-SM-F2TA2 50-59 years, male 240.3
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 238.9
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 231.2
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 229.2
GTEX-1JMOU-0011-R4b-SM-EY5ZL 60-69 years, female 228.7
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 228.1
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 227.1
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 226.5
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 224.2
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 224.2
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 223.9
GTEX-11GSO-0011-R4b-SM-GJ3R8 60-69 years, male 223.0
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 220.9
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 217.3
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 217.2
GTEX-11OF3-0011-R4a-SM-GJ3RB 60-69 years, male 215.1
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 206.7
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 200.5
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 199.1
GTEX-1P4AB-0011-R4b-SM-F2T9S 50-59 years, male 180.5
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 173.4
GTEX-15RJE-0011-R4a-SM-H7OH4 40-49 years, male 172.2
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 164.7
GTEX-14BMV-0011-R4a-SM-H6Q7P 50-59 years, male 160.2
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 158.1
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 150.5
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 135.5
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

205.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 205.4
FF:10151-102I7 76 years, female 205.4

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

39.1
Pig sample Sample description nTPM
Amygdala
nTPM: 39.1
Samples: 4

Max nTPM: 43.7
Min nTPM: 30.7
Sample A Female 43.5
Sample B Female 43.7
Sample C Male 38.5
Sample D Male 30.7

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

109.9
Mouse sample Sample description nTPM
Amygdala
nTPM: 109.9
Samples: 4

Max nTPM: 130.1
Min nTPM: 100.3
Sample A Male 100.4
Sample B Male 108.8
Sample C Female 130.1
Sample D Female 100.3

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

22.0
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 22.0
45668 Antisense, RP_040324_01_H05, Mouse strain C57BL/6J (56 days, male) 22.0
67936386 Antisense, RP_040324_01_H05, Mouse strain C57BL/6J (56 days, male) 10.2

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