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TISSUE AMYGDALA Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE
MIDBRAIN OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
Dictionary
Tissue proteome
Amygdala
Tissue methods
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:189.2 nTPM
HPA Brain:141.4 nTPM
GTEx:189.2 nTPM
FANTOM5:45.3 Scaled Tags Per Million
Pig:58.8 nTPM
Mouse:105.4 nTPM
Allen mouse:5.9 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

AMYGDALA - Annotated protein expression
Pending normal tissue analysis

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

141.4
Sample id Sample description nTPM
Amygdala
nTPM: 88.1
2814 Male, age 76, right hemisphere 134.5
2517 Female, age 94, left hemisphere 105.8
1987 Female, age 91, left hemisphere 84.3
2695 Female, age 67, right hemisphere 60.7
2514 Male, age 75, right hemisphere 55.4
Basal amygdala
nTPM: 141.4
2685 Female, age 94, left hemisphere 197.9
2827 Female, age 67, right hemisphere 170.5
2243 Female, age 91, right hemisphere 140.8
2110 Male, age 80, left hemisphere 118.8
1955 Male, age 76, both hemispheres 110.3
2609 Male, age 75, right hemisphere 109.9
Central amygdala
nTPM: 138.7
2826 Female, age 94, left hemisphere 263.2
2239 Male, age 80, left hemisphere 127.1
1905 Male, age 76, both hemispheres 122.3
2701 Female, age 91, right hemisphere 105.2
2515 Male, age 75, right hemisphere 75.7
Corticomedial amygdala
nTPM: 117.6
2535 Female, age 67, right hemisphere 154.2
2829 Male, age 80, left hemisphere 148.6
2429 Female, age 94, left hemisphere 122.4
2242 Female, age 91, right hemisphere 110.9
2240 Male, age 76, both hemispheres 90.8
2428 Male, age 75, right hemisphere 78.7
Lateral amygdala
nTPM: 132.0
2534 Female, age 94, left hemisphere 229.9
2830 Female, age 67, right hemisphere 141.0
1883 Male, age 76, both hemispheres 117.0
2256 Male, age 80, left hemisphere 113.9
2255 Female, age 91, right hemisphere 111.2
2516 Male, age 75, right hemisphere 79.2

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

189.2
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 189.2
Samples: 181

Max nTPM: 772.0
Min nTPM: 58.9
Std nTPM: 88.6
Median nTPM: 176.0
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 772.0
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 494.6
GTEX-14BMV-0011-R4a-SM-H6Q7P 50-59 years, male 430.7
GTEX-11DYG-0011-R4b-SM-GJ3RG 60-69 years, male 400.6
GTEX-1RQED-0011-R4b-SM-F2I2X 60-69 years, male 385.9
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 384.8
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 369.7
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 366.3
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 365.6
GTEX-1JMLX-0011-R4a-SM-EY5YJ 50-59 years, male 339.6
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 330.0
GTEX-1P4AB-0011-R4b-SM-F2T9S 50-59 years, male 329.9
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 321.9
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 310.6
GTEX-11GS4-0011-R4a-SM-GJ3RJ 60-69 years, male 309.6
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 308.5
GTEX-1RQEC-0011-R4b-SM-F342C 60-69 years, male 306.5
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 295.6
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 291.1
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 289.2
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 287.7
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 279.8
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 278.7
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 277.5
GTEX-145LU-0011-R4b-SM-5P9K1 50-59 years, male 275.0
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 273.9
GTEX-111FC-0011-R4a-SM-GIN8K 60-69 years, male 273.2
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 271.1
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 267.3
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 262.2
GTEX-1NV8Z-0011-R4b-SM-G8LMZ 60-69 years, male 262.1
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 260.1
GTEX-147F4-0011-R4b-SM-GJ3R4 50-59 years, male 256.9
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 251.8
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 248.1
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 247.6
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 238.9
GTEX-117XS-0011-R4b-SM-GJ3PR 60-69 years, male 226.4
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 225.9
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 224.7
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 223.9
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 223.2
GTEX-PVOW-0011-R4A-SM-H6Q8O 40-49 years, male 222.6
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 222.5
GTEX-12WSC-0011-R4a-SM-H6Q8M 50-59 years, male 216.3
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 215.8
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 214.1
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 214.0
GTEX-1PWST-0011-R4a-SM-F2T9X 70-79 years, male 213.9
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 213.4
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 211.8
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 211.0
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 210.6
GTEX-1JJ6O-0011-R4a-SM-EY5YM 60-69 years, male 209.0
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 208.1
GTEX-1PIIG-0011-R4a-SM-F2TAQ 30-39 years, male 206.6
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 206.2
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 204.8
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 204.4
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 204.4
GTEX-11NV4-0011-R4a-SM-GI4XC 60-69 years, male 202.8
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 202.2
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 200.4
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 199.5
GTEX-1PPGY-0011-R4a-SM-F3K4F 60-69 years, male 198.2
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 197.2
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 196.8
GTEX-1MJK2-0011-R4a-SM-F3426 50-59 years, male 196.7
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 195.0
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 194.0
GTEX-11DXY-0011-R4b-SM-GI4VR 60-69 years, male 192.3
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 192.0
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 191.8
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 191.7
GTEX-1KWVE-0011-R4a-SM-F3K5X 30-39 years, male 190.7
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 190.6
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 189.9
GTEX-1LKK1-0011-R4b-SM-EY5YA 50-59 years, female 187.0
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 186.1
GTEX-1RDX4-0011-R4b-SM-F3K43 50-59 years, female 185.9
GTEX-1LVA9-0011-R4a-SM-F2TA2 50-59 years, male 185.6
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 183.2
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 181.8
GTEX-11GSO-0011-R4b-SM-GJ3R8 60-69 years, male 181.1
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 180.3
GTEX-1N2EF-0011-R4a-SM-F341F 60-69 years, male 180.1
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 179.7
GTEX-1R46S-0011-R4b-SM-F2TBF 60-69 years, female 177.7
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 177.5
GTEX-1POEN-0011-R4b-SM-F3K4O 30-39 years, female 177.3
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 176.0
GTEX-1OJC4-0011-R4a-SM-F3K54 50-59 years, female 174.4
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 173.7
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 173.3
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 172.6
GTEX-1JMOU-0011-R4b-SM-EY5ZL 60-69 years, female 172.0
GTEX-12ZZY-0011-R4a-SM-GIN9F 60-69 years, male 171.9
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 171.9
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 171.8
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 171.0
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 169.6
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 169.0
GTEX-14C5O-0011-R4b-SM-G9ERF 60-69 years, male 168.2
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 167.9
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 166.3
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 165.7
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 165.6
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 165.4
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 165.4
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 160.1
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 159.1
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 158.3
GTEX-13FHO-0011-R4b-SM-H6611 60-69 years, male 157.8
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 155.1
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 154.6
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 154.6
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 152.8
GTEX-11OF3-0011-R4a-SM-GJ3RB 60-69 years, male 150.5
GTEX-13PLJ-0011-R4b-SM-GJ3R6 60-69 years, female 149.1
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 149.1
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 147.2
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 146.4
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 145.1
GTEX-1JMQK-0011-R4a-SM-G8LLQ 60-69 years, male 143.8
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 143.1
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 142.6
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 141.1
GTEX-15RJE-0011-R4a-SM-H7OH4 40-49 years, male 140.0
GTEX-13QJC-0011-R4a-SM-H65ZP 60-69 years, female 138.4
GTEX-1LB8K-0011-R4b-SM-F6487 50-59 years, male 135.0
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 134.6
GTEX-1O9I2-0011-R4b-SM-F3K4K 50-59 years, male 134.0
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 133.9
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 132.9
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 131.8
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 131.7
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 131.2
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 128.5
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 127.5
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 127.4
GTEX-11ZTS-0011-R4b-SM-GINAQ 60-69 years, female 125.4
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 124.6
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 123.9
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 122.3
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 122.0
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 121.9
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 118.8
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 117.1
GTEX-1117F-0011-R4b-SM-GI4VM 60-69 years, female 116.7
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 115.4
GTEX-ZYY3-0011-R4a-SM-GQ1CY 60-69 years, female 112.9
GTEX-ZZPT-0011-R4a-SM-GPRX4 50-59 years, male 110.7
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 107.8
GTEX-1LH75-0011-R4a-SM-F2TAM 50-59 years, female 107.7
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 107.4
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 107.1
GTEX-1QMI2-0011-R4b-SM-F3K4R 60-69 years, male 106.8
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 106.0
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 105.0
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 104.4
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 103.0
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 101.6
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 100.0
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 99.2
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 98.9
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 97.3
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 94.5
GTEX-1QP6S-0011-R4b-SM-F33ZY 40-49 years, male 91.9
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 89.9
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 89.0
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 88.3
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 86.7
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 78.4
GTEX-1JN1M-0011-R4b-SM-F6494 60-69 years, female 76.5
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 76.4
GTEX-1RLM8-0011-R4a-SM-F2TBL 50-59 years, male 69.4
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 69.4
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 67.1
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 66.9
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 62.7
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 58.9
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

45.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 45.3
FF:10151-102I7 76 years, female 45.3

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

58.8
Pig sample Sample description nTPM
Amygdala
nTPM: 58.8
Samples: 4

Max nTPM: 80.2
Min nTPM: 37.5
Sample A Female 80.2
Sample B Female 54.0
Sample C Male 63.5
Sample D Male 37.5

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

105.4
Mouse sample Sample description nTPM
Amygdala
nTPM: 105.4
Samples: 4

Max nTPM: 122.2
Min nTPM: 95.8
Sample A Male 96.6
Sample B Male 106.9
Sample C Female 122.2
Sample D Female 95.8

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

5.9
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 5.9
79544844 Antisense, RP_071101_01_A06, Mouse strain C57BL/6J (56 days, male) 6.4
79556628 Antisense, RP_071101_01_A06, Mouse strain C57BL/6J (56 days, male) 5.6
2042 Antisense, RP_040324_01_C10, Mouse strain C57BL/6J (56 days, male) 5.4

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