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TISSUE PRIMARY DATA RETINA Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
NASOPHARYNX ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Tissue proteome
Eye
Retina
Tissue methods
RETINA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:297.0 nTPM
GTEx:297.0 nTPM
FANTOM5:108.9 Scaled Tags Per Million
EYE - SINGLE CELL RNA EXPRESSION
Explore single cell type data

RETINA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

297.0
GTEx sample id Sample description nTPM
Retina
Average nTPM: 297.0
Samples: 105

Max nTPM: 413.4
Min nTPM: 193.9
Std nTPM: 44.7
Median nTPM:
237_1 82 years, male 413.4
396_1 62 years, male 387.8
375_1 74 years, female 385.4
229_1 69 years, female 380.1
177_1 74 years, male 376.6
379_1 60 years, male 375.2
243_1 75 years, male 374.7
246_1 77 years, male 369.7
452_1 88 years, female 369.0
153_1 70 years, female 365.4
447_1 81 years, male 357.6
347_1 72 years, male 357.4
189_1 76 years, male 356.7
162_1 79 years, female 356.6
384_1 83 years, male 356.1
265_1 87 years, male 356.0
377_1 82 years, female 350.6
321_1 62 years, female 345.0
163_1 78 years, male 338.7
506_1 65 years, male 334.7
394_1 75 years, female 333.8
414_1 84 years, female 333.0
120_1 70 years, female 331.6
313_1 79 years, female 327.9
35_1 74 years, female 327.1
319_1 81 years, male 326.5
354_1 81 years, female 326.2
468_1 89 years, male 325.3
218_1 71 years, female 324.1
315_1 62 years, female 322.7
386_1 76 years, male 316.7
217_1 76 years, male 315.4
355_1 70 years, female 313.9
526_1 61 years, male 312.3
115_1 83 years, male 310.4
41_1 94 years, female 310.0
142_1 61 years, female 308.3
376_1 75 years, female 307.1
9_1 66 years, female 307.0
42_1 85 years, male 306.5
389_1 86 years, female 306.1
349_1 83 years, male 305.5
172_1 72 years, female 305.0
99_1 64 years, male 304.6
425_1 59 years, female 302.7
404_1 82 years, female 301.5
6_1 73 years, female 300.3
145_1 84 years, male 299.9
117_1 61 years, male 299.0
335_1 73 years, female 297.8
4_1 88 years, female 297.6
350_1 84 years, female 297.3
352_1 62 years, male 296.3
173_1 67 years, male 296.2
126_1 63 years, male 294.1
254_1 77 years, female 293.7
264_1 73 years, female 292.6
405_1 91 years, male 292.5
266_1 85 years, male 291.0
324_1 76 years, male 290.0
503_1 68 years, male 288.9
286_1 68 years, female 286.6
356_1 87 years, female 285.8
307_1 66 years, female 282.8
2_1 77 years, female 281.9
499_1 55 years, female 279.2
406_1 79 years, male 277.9
415_1 77 years, female 277.0
353_1 82 years, female 276.7
17_1 71 years, male 276.6
351_1 91 years, male 276.6
480_1 63 years, male 276.3
322_1 76 years, male 270.9
318_1 68 years, male 270.7
517_1 88 years, male 269.7
119_1 70 years, female 269.6
251_1 78 years, male 266.8
81_1 67 years, male 266.4
295_1 61 years, female 265.0
137_1 83 years, male 264.3
518_1 75 years, female 263.1
109_1 81 years, female 263.0
308_1 70 years, female 262.8
317_1 60 years, male 260.5
288_1 66 years, female 259.3
18_1 88 years, male 259.2
314_1 67 years, male 259.2
292_1 71 years, male 253.6
316_1 62 years, male 251.7
311_1 78 years, male 251.6
43_1 64 years, female 249.6
139_1 64 years, female 246.0
413_1 59 years, female 243.4
320_1 89 years, female 239.3
32_1 67 years, male 238.9
466_1 57 years, female 237.2
291_1 76 years, male 235.8
501_1 88 years, male 234.2
89_1 63 years, male 228.6
348_1 84 years, male 225.9
495_1 57 years, female 225.7
490_1 67 years, female 221.6
293_1 68 years, female 218.7
149_1 88 years, male 196.7
491_1 89 years, female 193.9
Show allShow less

RETINA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

108.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Retina
Scaled Tags Per Million: 108.9
FF:10030-101E3 24-65 years, mixed 108.9

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