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  • TISSUE

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  • NPIPA9
TISSUE PRIMARY DATA AMYGDALA Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
NASOPHARYNX ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Tissue proteome
Amygdala
Tissue methods
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:119.0 nTPM
HPA Brain:100.2 nTPM
GTEx:119.0 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

100.2
Sample id Sample description nTPM
Amygdala
nTPM: 44.4
2517 Female, age 94, left hemisphere 52.1
2814 Male, age 76, right hemisphere 44.2
2514 Male, age 75, right hemisphere 43.2
2695 Female, age 67, right hemisphere 41.7
1987 Female, age 91, left hemisphere 40.9
Basal amygdala
nTPM: 98.6
2827 Female, age 67, right hemisphere 160.4
2685 Female, age 94, left hemisphere 140.3
2243 Female, age 91, right hemisphere 121.8
2609 Male, age 75, right hemisphere 65.0
1955 Male, age 76, both hemispheres 59.3
2110 Male, age 80, left hemisphere 44.6
Central amygdala
nTPM: 65.6
2701 Female, age 91, right hemisphere 105.8
2239 Male, age 80, left hemisphere 85.4
2826 Female, age 94, left hemisphere 61.0
1905 Male, age 76, both hemispheres 38.8
2515 Male, age 75, right hemisphere 37.0
Corticomedial amygdala
nTPM: 100.2
2535 Female, age 67, right hemisphere 219.1
2242 Female, age 91, right hemisphere 112.6
2429 Female, age 94, left hemisphere 93.9
2240 Male, age 76, both hemispheres 75.9
2829 Male, age 80, left hemisphere 63.0
2428 Male, age 75, right hemisphere 36.9
Lateral amygdala
nTPM: 71.4
2256 Male, age 80, left hemisphere 108.2
2255 Female, age 91, right hemisphere 101.5
2534 Female, age 94, left hemisphere 76.3
2830 Female, age 67, right hemisphere 72.8
2516 Male, age 75, right hemisphere 40.2
1883 Male, age 76, both hemispheres 29.6

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

119.0
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 119.0
Samples: 181

Max nTPM: 424.7
Min nTPM: 16.5
Std nTPM: 71.3
Median nTPM: 107.3
GTEX-1NV8Z-0011-R4b-SM-G8LMZ 60-69 years, male 424.7
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 404.3
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 350.8
GTEX-1RQED-0011-R4b-SM-F2I2X 60-69 years, male 323.3
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 321.6
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 270.6
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 260.3
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 258.0
GTEX-ZYY3-0011-R4a-SM-GQ1CY 60-69 years, female 258.0
GTEX-147F4-0011-R4b-SM-GJ3R4 50-59 years, male 244.6
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 243.0
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 241.7
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 241.6
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 232.8
GTEX-13QJC-0011-R4a-SM-H65ZP 60-69 years, female 228.6
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 219.6
GTEX-117XS-0011-R4b-SM-GJ3PR 60-69 years, male 218.8
GTEX-1RQEC-0011-R4b-SM-F342C 60-69 years, male 214.6
GTEX-1R46S-0011-R4b-SM-F2TBF 60-69 years, female 213.6
GTEX-11DYG-0011-R4b-SM-GJ3RG 60-69 years, male 206.8
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 205.5
GTEX-1JMLX-0011-R4a-SM-EY5YJ 50-59 years, male 203.5
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 201.4
GTEX-11GS4-0011-R4a-SM-GJ3RJ 60-69 years, male 196.5
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 195.7
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 194.4
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 193.5
GTEX-1PPGY-0011-R4a-SM-F3K4F 60-69 years, male 189.2
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 184.7
GTEX-1LKK1-0011-R4b-SM-EY5YA 50-59 years, female 182.2
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 180.5
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 169.4
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 168.8
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 165.7
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 163.1
GTEX-1JMQK-0011-R4a-SM-G8LLQ 60-69 years, male 162.9
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 161.6
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 160.7
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 155.8
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 154.6
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 154.5
GTEX-12ZZY-0011-R4a-SM-GIN9F 60-69 years, male 153.9
GTEX-ZZPT-0011-R4a-SM-GPRX4 50-59 years, male 148.7
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 147.3
GTEX-11DXY-0011-R4b-SM-GI4VR 60-69 years, male 146.8
GTEX-15RJE-0011-R4a-SM-H7OH4 40-49 years, male 145.3
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 144.8
GTEX-145LU-0011-R4b-SM-5P9K1 50-59 years, male 144.2
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 142.4
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 142.3
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 142.0
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 141.2
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 139.4
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 139.2
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 138.9
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 138.8
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 138.4
GTEX-1O9I2-0011-R4b-SM-F3K4K 50-59 years, male 138.1
GTEX-1LB8K-0011-R4b-SM-F6487 50-59 years, male 136.8
GTEX-1OJC4-0011-R4a-SM-F3K54 50-59 years, female 136.2
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 136.1
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 135.5
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 133.0
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 132.9
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 132.0
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 130.5
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 130.5
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 129.1
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 128.6
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 128.2
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 127.4
GTEX-12WSC-0011-R4a-SM-H6Q8M 50-59 years, male 126.8
GTEX-1RDX4-0011-R4b-SM-F3K43 50-59 years, female 121.1
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 120.2
GTEX-1KWVE-0011-R4a-SM-F3K5X 30-39 years, male 120.2
GTEX-1POEN-0011-R4b-SM-F3K4O 30-39 years, female 119.2
GTEX-13FHO-0011-R4b-SM-H6611 60-69 years, male 116.5
GTEX-1PWST-0011-R4a-SM-F2T9X 70-79 years, male 115.4
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 114.8
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 113.7
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 113.4
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 113.3
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 113.1
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 112.4
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 112.2
GTEX-1MJK2-0011-R4a-SM-F3426 50-59 years, male 111.9
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 111.0
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 110.8
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 109.3
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 107.7
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 107.3
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 106.4
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 105.9
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 105.9
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 104.2
GTEX-13PLJ-0011-R4b-SM-GJ3R6 60-69 years, female 98.0
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 97.8
GTEX-14BMV-0011-R4a-SM-H6Q7P 50-59 years, male 96.2
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 95.9
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 95.5
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 95.3
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 95.0
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 95.0
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 94.6
GTEX-1QMI2-0011-R4b-SM-F3K4R 60-69 years, male 93.8
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 93.6
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 93.1
GTEX-1JJ6O-0011-R4a-SM-EY5YM 60-69 years, male 92.4
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 92.3
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 91.6
GTEX-1LH75-0011-R4a-SM-F2TAM 50-59 years, female 90.5
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 89.6
GTEX-1P4AB-0011-R4b-SM-F2T9S 50-59 years, male 88.4
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 87.9
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 87.5
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 87.3
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 87.2
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 86.2
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 85.6
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 85.5
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 85.1
GTEX-11GSO-0011-R4b-SM-GJ3R8 60-69 years, male 83.5
GTEX-11ZTS-0011-R4b-SM-GINAQ 60-69 years, female 79.7
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 79.0
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 78.0
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 77.9
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 77.4
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 76.5
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 74.8
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 74.8
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 74.6
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 73.6
GTEX-1JN1M-0011-R4b-SM-F6494 60-69 years, female 72.2
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 70.4
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 69.2
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 67.5
GTEX-PVOW-0011-R4A-SM-H6Q8O 40-49 years, male 66.9
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 66.8
GTEX-1LVA9-0011-R4a-SM-F2TA2 50-59 years, male 66.5
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 64.0
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 63.7
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 62.8
GTEX-1QP6S-0011-R4b-SM-F33ZY 40-49 years, male 62.4
GTEX-11NV4-0011-R4a-SM-GI4XC 60-69 years, male 62.0
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 61.8
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 61.6
GTEX-1JMOU-0011-R4b-SM-EY5ZL 60-69 years, female 60.8
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 60.6
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 57.7
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 56.9
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 56.6
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 55.0
GTEX-111FC-0011-R4a-SM-GIN8K 60-69 years, male 54.4
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 53.9
GTEX-1PIIG-0011-R4a-SM-F2TAQ 30-39 years, male 53.7
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 53.6
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 50.0
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 49.5
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 48.7
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 44.5
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 43.6
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 43.1
GTEX-1N2EF-0011-R4a-SM-F341F 60-69 years, male 40.3
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 39.7
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 38.3
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 37.1
GTEX-14C5O-0011-R4b-SM-G9ERF 60-69 years, male 37.0
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 36.1
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 34.1
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 33.8
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 33.8
GTEX-1RLM8-0011-R4a-SM-F2TBL 50-59 years, male 33.4
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 29.3
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 28.5
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 25.6
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 24.4
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 22.8
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 21.4
GTEX-11OF3-0011-R4a-SM-GJ3RB 60-69 years, male 20.6
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 18.7
GTEX-1117F-0011-R4b-SM-GI4VM 60-69 years, female 16.5
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