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A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
4.1
nTPM
Monaco:
16.7
nTPM
Schmiedel:
18.8
TPM
T-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
4.1
HPA sample
nTPM
gdT-cell nTPM: 4.1
Samples: 6
Max nTPM: 8.9
Min nTPM: 1.1
P10809_1007
2.6
P10809_1022
5.4
P10809_1041
8.9
P10809_1060
3.8
P10809_1077
2.8
P10809_1098
1.1
MAIT T-cell nTPM: 3.1
Samples: 6
Max nTPM: 6.4
Min nTPM: 0.0
P10809_1006
3.2
P10809_1024
2.0
P10809_1043
3.6
P10809_1062
6.4
P10809_1083
3.1
P10809_1097
0.0
Memory CD4 T-cell nTPM: 2.3
Samples: 6
Max nTPM: 4.3
Min nTPM: 0.8
P10809_1014
0.8
P10809_1026
2.0
P10809_1045
1.3
P10809_1064
4.3
P10809_1086
2.5
P10809_1113
2.6
Memory CD8 T-cell nTPM: 2.2
Samples: 5
Max nTPM: 3.3
Min nTPM: 1.1
P10809_1012
1.2
P10809_1027
2.5
P10809_1046
3.3
P10809_1065
2.7
P10809_1111
1.1
Naive CD4 T-cell nTPM: 2.8
Samples: 6
Max nTPM: 4.6
Min nTPM: 1.0
P10809_1015
1.8
P10809_1030
2.7
P10809_1049
1.0
P10809_1068
2.8
P10809_1085
4.6
P10809_1112
3.7
Naive CD8 T-cell nTPM: 1.5
Samples: 6
Max nTPM: 4.3
Min nTPM: 0.0
P10809_1016
1.7
P10809_1031
0.0
P10809_1050
0.8
P10809_1069
4.3
P10809_1087
1.4
P10809_1110
0.5
T-reg nTPM: 3.2
Samples: 6
Max nTPM: 14.5
Min nTPM: 0.1
P10809_1018
1.6
P10809_1037
0.1
P10809_1056
1.2
P10809_1075
14.5
P10809_1094
0.4
P10809_1106
1.1
T-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
16.7
Monaco sample
nTPM
Central memory CD8 T-cell nTPM: 10.7
Samples: 4
Max nTPM: 20.2
Min nTPM: 6.2
RHH5202_R3573
9.9
RHH5230_R3602
6.4
RHH5259_R3631
6.2
RHH5288_R3660
20.2
Effector memory CD8 T-cell nTPM: 10.7
Samples: 4
Max nTPM: 17.7
Min nTPM: 6.5
RHH5203_R3574
8.8
RHH5231_R3603
9.8
RHH5260_R3632
6.5
RHH5289_R3661
17.7
MAIT T-cell nTPM: 12.1
Samples: 4
Max nTPM: 17.4
Min nTPM: 7.8
RHH5233_R3605
14.1
RHH5205_R3576
7.8
RHH5262_R3634
9.0
RHH5297_R3663
17.4
Memory CD4 T-cell TFH nTPM: 12.7
Samples: 4
Max nTPM: 19.7
Min nTPM: 8.1
RHH5300_R3666
14.5
RHH5236_R3608
8.1
RHH5265_R3637
8.6
RHH5208_R3579
19.7
Memory CD4 T-cell Th1 nTPM: 8.2
Samples: 4
Max nTPM: 10.9
Min nTPM: 4.6
RHH5210_R3581
10.9
RHH5302_R3668
4.6
RHH5238_R3610
9.0
RHH5267_R3639
8.3
Memory CD4 T-cell Th1/Th17 nTPM: 10.0
Samples: 4
Max nTPM: 15.4
Min nTPM: 4.7
RHH5303_R3669
11.8
RHH5211_R3582
8.1
RHH5239_R3611
15.4
RHH5268_R3640
4.7
Memory CD4 T-cell Th17 nTPM: 10.3
Samples: 4
Max nTPM: 15.6
Min nTPM: 6.6
RHH5304_R3670
15.6
RHH5212_R3583
8.1
RHH5240_R3612
6.6
RHH5269_R3641
10.9
Memory CD4 T-cell Th2 nTPM: 13.6
Samples: 4
Max nTPM: 17.5
Min nTPM: 11.6
RHH5305_R3671
11.6
RHH5213_R3584
17.5
RHH5241_R3613
13.5
RHH5270_R3642
11.9
Naive CD4 T-cell nTPM: 8.5
Samples: 4
Max nTPM: 11.9
Min nTPM: 5.5
RHH5306_R3672
11.9
RHH5214_R3585
6.9
RHH5242_R3614
5.5
RHH5271_R3643
9.7
Naive CD8 T-cell nTPM: 8.5
Samples: 4
Max nTPM: 11.5
Min nTPM: 6.1
RHH5201_R3572
11.5
RHH5229_R3601
6.1
RHH5258_R3630
7.6
RHH5287_R3659
8.7
Non-Vd2 gdTCR nTPM: 11.5
Samples: 4
Max nTPM: 14.7
Min nTPM: 9.4
RHH5235_R3607
9.4
RHH5264_R3636
12.2
RHH5207_R3578
14.7
RHH5299_R3665
9.6
T-reg nTPM: 16.7
Samples: 4
Max nTPM: 25.2
Min nTPM: 11.9
RHH5301_R3667
12.9
RHH5237_R3609
25.2
RHH5266_R3638
11.9
RHH5209_R3580
16.7
Terminal effector memory CD4 T-cell nTPM: 15.1
Samples: 2
Max nTPM: 19.3
Min nTPM: 10.9
RHH5243_R3615
19.3
RHH5272_R3644
10.9
Terminal effector memory CD8 T-cell nTPM: 14.1
Samples: 4
Max nTPM: 18.7
Min nTPM: 8.4
RHH5232_R3604
18.7
RHH5204_R3575
15.6
RHH5261_R3633
13.6
RHH5296_R3662
8.4
Vd2 gdTCR nTPM: 12.3
Samples: 4
Max nTPM: 16.0
Min nTPM: 5.0
RHH5234_R3606
16.0
RHH5206_R3577
5.0
RHH5263_R3635
14.3
RHH5298_R3664
13.8
T-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
The Human Protein Atlas project is funded
