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A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
156.0
nTPM
Monaco:
84.6
nTPM
Schmiedel:
120.8
TPM
T-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
156.0
HPA sample
nTPM
gdT-cell nTPM: 122.5
Samples: 6
Max nTPM: 153.4
Min nTPM: 96.4
P10809_1007
107.9
P10809_1022
153.4
P10809_1041
145.3
P10809_1060
96.4
P10809_1077
119.6
P10809_1098
112.6
MAIT T-cell nTPM: 126.7
Samples: 6
Max nTPM: 153.8
Min nTPM: 94.0
P10809_1006
94.0
P10809_1024
146.4
P10809_1043
139.9
P10809_1062
115.4
P10809_1083
110.4
P10809_1097
153.8
Memory CD4 T-cell nTPM: 115.8
Samples: 6
Max nTPM: 137.0
Min nTPM: 95.4
P10809_1014
95.4
P10809_1026
137.0
P10809_1045
134.4
P10809_1064
104.3
P10809_1086
106.1
P10809_1113
117.7
Memory CD8 T-cell nTPM: 115.9
Samples: 5
Max nTPM: 137.0
Min nTPM: 87.1
P10809_1012
87.1
P10809_1027
137.0
P10809_1046
123.3
P10809_1065
113.2
P10809_1111
118.9
Naive CD4 T-cell nTPM: 115.4
Samples: 6
Max nTPM: 149.6
Min nTPM: 91.0
P10809_1015
91.0
P10809_1030
129.0
P10809_1049
149.6
P10809_1068
102.2
P10809_1085
102.6
P10809_1112
117.8
Naive CD8 T-cell nTPM: 120.9
Samples: 6
Max nTPM: 150.3
Min nTPM: 103.5
P10809_1016
117.4
P10809_1031
150.3
P10809_1050
127.5
P10809_1069
104.8
P10809_1087
103.5
P10809_1110
121.9
T-reg nTPM: 156.1
Samples: 6
Max nTPM: 172.4
Min nTPM: 132.2
P10809_1018
135.7
P10809_1037
168.2
P10809_1056
172.4
P10809_1075
165.6
P10809_1094
162.3
P10809_1106
132.2
T-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
84.6
Monaco sample
nTPM
Central memory CD8 T-cell nTPM: 51.8
Samples: 4
Max nTPM: 72.8
Min nTPM: 37.7
RHH5202_R3573
44.7
RHH5230_R3602
37.7
RHH5259_R3631
52.0
RHH5288_R3660
72.8
Effector memory CD8 T-cell nTPM: 41.4
Samples: 4
Max nTPM: 45.0
Min nTPM: 34.3
RHH5203_R3574
43.1
RHH5231_R3603
45.0
RHH5260_R3632
43.3
RHH5289_R3661
34.3
MAIT T-cell nTPM: 59.6
Samples: 4
Max nTPM: 91.9
Min nTPM: 37.9
RHH5233_R3605
58.3
RHH5205_R3576
50.2
RHH5262_R3634
37.9
RHH5297_R3663
91.9
Memory CD4 T-cell TFH nTPM: 63.4
Samples: 4
Max nTPM: 87.1
Min nTPM: 38.6
RHH5300_R3666
87.1
RHH5236_R3608
62.2
RHH5265_R3637
38.6
RHH5208_R3579
65.5
Memory CD4 T-cell Th1 nTPM: 68.3
Samples: 4
Max nTPM: 95.0
Min nTPM: 39.9
RHH5210_R3581
39.9
RHH5302_R3668
95.0
RHH5238_R3610
80.9
RHH5267_R3639
57.3
Memory CD4 T-cell Th1/Th17 nTPM: 63.3
Samples: 4
Max nTPM: 82.4
Min nTPM: 52.4
RHH5303_R3669
82.4
RHH5211_R3582
52.4
RHH5239_R3611
60.3
RHH5268_R3640
57.9
Memory CD4 T-cell Th17 nTPM: 51.6
Samples: 4
Max nTPM: 69.8
Min nTPM: 41.0
RHH5304_R3670
53.5
RHH5212_R3583
69.8
RHH5240_R3612
42.2
RHH5269_R3641
41.0
Memory CD4 T-cell Th2 nTPM: 64.3
Samples: 4
Max nTPM: 82.3
Min nTPM: 55.4
RHH5305_R3671
82.3
RHH5213_R3584
55.4
RHH5241_R3613
63.9
RHH5270_R3642
55.5
Naive CD4 T-cell nTPM: 58.8
Samples: 4
Max nTPM: 75.2
Min nTPM: 47.1
RHH5306_R3672
64.9
RHH5214_R3585
75.2
RHH5242_R3614
47.1
RHH5271_R3643
48.1
Naive CD8 T-cell nTPM: 53.5
Samples: 4
Max nTPM: 64.0
Min nTPM: 41.2
RHH5201_R3572
41.2
RHH5229_R3601
46.9
RHH5258_R3630
64.0
RHH5287_R3659
61.7
Non-Vd2 gdTCR nTPM: 58.3
Samples: 4
Max nTPM: 103.7
Min nTPM: 28.8
RHH5235_R3607
42.2
RHH5264_R3636
58.4
RHH5207_R3578
28.8
RHH5299_R3665
103.7
T-reg nTPM: 62.4
Samples: 4
Max nTPM: 92.9
Min nTPM: 45.8
RHH5301_R3667
92.9
RHH5237_R3609
55.3
RHH5266_R3638
45.8
RHH5209_R3580
55.6
Terminal effector memory CD4 T-cell nTPM: 46.0
Samples: 2
Max nTPM: 46.8
Min nTPM: 45.1
RHH5243_R3615
45.1
RHH5272_R3644
46.8
Terminal effector memory CD8 T-cell nTPM: 76.2
Samples: 4
Max nTPM: 123.1
Min nTPM: 40.0
RHH5232_R3604
40.0
RHH5204_R3575
123.1
RHH5261_R3633
71.7
RHH5296_R3662
69.9
Vd2 gdTCR nTPM: 84.6
Samples: 4
Max nTPM: 120.5
Min nTPM: 49.5
RHH5234_R3606
52.8
RHH5206_R3577
115.5
RHH5263_R3635
49.5
RHH5298_R3664
120.5
T-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
The Human Protein Atlas project is funded
