We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
TAX1BP3
HPA
RESOURCES
  • TISSUE
  • BRAIN
  • SINGLE CELL
  • SUBCELLULAR
  • CANCER
  • BLOOD
  • CELL LINE
  • STRUCTURE
  • INTERACTION
ABOUT
  • INTRODUCTION
  • HISTORY
  • ORGANIZATION
  • PUBLICATIONS
  • ACKNOWLEDGMENTS
  • CONTACT
NEWS
  • NEWS ARTICLES
  • PRESS ROOM
LEARN
  • DICTIONARY
  • PROTEIN CLASSES
  • PROTEIN EVIDENCE
  • METHODS
  • EDUCATIONAL VIDEOS
DATA
  • DOWNLOADABLE DATA
  • PUBLICATION DATA
  • RELEASE HISTORY
HELP
  • HELP & FAQ
  • ANTIBODY AVAILABILITY
  • DISCLAIMER
  • PRIVACY STATEMENT
  • LICENCE & CITATION
Fields »
Search result

Field
Term
Gene name
Class
Subclass
Category
Keyword
Chromosome
External id
Tissue
Cell type
Expression
Antibody panel
Tissue
Main location
Patient ID
Annotation
Tissue
Category
Tau score
Cluster
Reliability
Brain region
Category
Tau score
Brain region
Category
Tau score
Brain region
Category
Tau score
Cluster
Reliability
Tissue
Cell type
Enrichment
Cell type
Category
Tau score
Cell type group
Category
Tau score
Cell type
Category
Tau score
Cell type
Category
Tau score
Cell lineage
Category
Tau score
Cluster
Cluster
Location
Searches
Location
Cell line
Class
Type
Phase
Reliability
Cancer
Prognosis
Cancer
Category
Cancer
Category
Tau score
Cluster
Variants
Interacting gene (ensg_id)
Type
Number of interactions
Pathway
ipTM
Category
Category
Category
Category
Validation
Validation
Validation
Validation
Antibodies
Data type
Column


  • SUMMARY

  • TISSUE

  • BRAIN

  • SINGLE CELL

  • SUBCELL

  • CANCER

  • BLOOD

  • CELL LINE

  • STRUCTURE

  • INTERACTION

  • TAX1BP3
TISSUE PRIMARY DATA VAGINA Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
NASOPHARYNX ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Vagina
Tissue proteome
Vagina
Tissue methods
VAGINA - Expression summary
Protein expression
Vaginai

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Squamous epithelial cells: Medium
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:165.9 nTPM
GTEx:165.9 nTPM
FANTOM5:92.3 Scaled Tags Per Million

VAGINA - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells. Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Ascending and descending describe two types of gradient, based on difference in staining intensity between enterocytes in crypts and apical enterocytes.

Ascending - the staining intensity is stronger in apical enterocytes (towards the lumen) compared to enterocytes in the crypts (gland based)

Descending - the staining is weaker in apical enterocytes compared to enterocytes in crypts

Antibody HPA063078
Squamous epithelial cells Medium


VAGINA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

165.9
GTEx sample id Sample description nTPM
Vagina
Average nTPM: 165.9
Samples: 170

Max nTPM: 330.3
Min nTPM: 61.8
Std nTPM: 49.8
Median nTPM: 158.3
GTEX-R45C-2226-SM-GQ1EF 60-69 years, female 330.3
GTEX-1A8FM-2426-SM-7IGPE 50-59 years, female 309.2
GTEX-15ER7-2526-SM-7KUFW 20-29 years, female 296.6
GTEX-ZLWG-1126-SM-4WWFQ 50-59 years, female 291.5
GTEX-QCQG-1226-SM-48U23 50-59 years, female 289.9
GTEX-11DXX-1726-SM-5H11T 60-69 years, female 272.9
GTEX-15SDE-1726-SM-6LPJS 50-59 years, female 269.5
GTEX-1AMFI-1526-SM-73KVY 50-59 years, female 268.7
GTEX-1LVAN-1626-SM-CNPQ7 50-59 years, female 265.2
GTEX-S7SF-1426-SM-4AT5A 20-29 years, female 262.3
GTEX-1J8EW-2526-SM-CKZO2 60-69 years, female 261.6
GTEX-1NUQO-1826-SM-E6CQU 20-29 years, female 258.7
GTEX-ZVT2-0626-SM-5GICR 50-59 years, female 256.2
GTEX-X8HC-2826-SM-46MWJ 50-59 years, female 255.0
GTEX-ZZPU-2226-SM-5EGIV 50-59 years, female 249.5
GTEX-14PJ6-1626-SM-6872D 60-69 years, female 247.9
GTEX-1J1OQ-1826-SM-CL53R 40-49 years, female 237.0
GTEX-1JN76-1526-SM-CNPPF 20-29 years, female 237.0
GTEX-13QIC-1826-SM-5J1MY 60-69 years, female 235.4
GTEX-1MCYP-1326-SM-EV7AD 20-29 years, female 235.3
GTEX-YJ8O-1226-SM-5P9JE 40-49 years, female 233.4
GTEX-ZVT3-2726-SM-5GU5X 60-69 years, female 229.3
GTEX-RNOR-2526-SM-F21KT 50-59 years, female 224.8
GTEX-1QP28-1426-SM-EVR4E 50-59 years, female 222.6
GTEX-PWCY-1726-SM-48TD3 20-29 years, female 222.2
GTEX-13QBU-1726-SM-5IJFQ 40-49 years, female 216.5
GTEX-OXRK-2026-SM-GOQY5 50-59 years, female 210.0
GTEX-YFC4-2926-SM-5IFJ8 40-49 years, female 207.6
GTEX-SE5C-1126-SM-4BRWZ 40-49 years, female 207.3
GTEX-PX3G-2526-SM-48TZV 20-29 years, female 207.2
GTEX-T2IS-1926-SM-4DM74 20-29 years, female 207.0
GTEX-ZP4G-0826-SM-4WWF3 20-29 years, female 206.3
GTEX-14A5I-2726-SM-5MR84 50-59 years, female 201.6
GTEX-18A7A-2826-SM-7LT8J 50-59 years, female 199.9
GTEX-1IDJU-1026-SM-AHZ2U 60-69 years, female 199.3
GTEX-QVJO-2526-SM-CYPRA 60-69 years, female 196.3
GTEX-15SB6-1426-SM-7KUEM 50-59 years, female 194.1
GTEX-1LNCM-1026-SM-E9U5D 50-59 years, female 192.1
GTEX-18D9A-1026-SM-7KFRU 30-39 years, female 192.0
GTEX-145ME-1426-SM-5RQJS 40-49 years, female 189.7
GTEX-13PVR-1426-SM-5S2PW 60-69 years, female 189.6
GTEX-1HBPM-2726-SM-9WYUA 60-69 years, female 189.6
GTEX-11EMC-1926-SM-5A5JU 60-69 years, female 188.4
GTEX-13FTY-2026-SM-GIN9K 40-49 years, female 186.7
GTEX-14PKU-1326-SM-6871B 40-49 years, female 186.4
GTEX-15SHU-2926-SM-7KUKT 40-49 years, female 185.7
GTEX-TML8-1126-SM-4DXSS 40-49 years, female 185.6
GTEX-S341-1226-SM-4AD5S 40-49 years, female 185.1
GTEX-S4UY-1026-SM-4AD53 40-49 years, female 184.4
GTEX-13D11-1326-SM-5IJFY 50-59 years, female 184.1
GTEX-ZVZQ-2726-SM-GPRY1 60-69 years, female 183.6
GTEX-X15G-1926-SM-4PQZQ 50-59 years, female 183.3
GTEX-P78B-2226-SM-3P5ZZ 40-49 years, female 182.9
GTEX-1GN1W-1526-SM-7P8TG 50-59 years, female 181.3
GTEX-Y3IK-2226-SM-4YCD4 50-59 years, female 181.2
GTEX-RWS6-1726-SM-47JXP 60-69 years, female 180.9
GTEX-11I78-2026-SM-5987C 50-59 years, female 179.8
GTEX-12WSD-2926-SM-5LZUH 60-69 years, female 179.5
GTEX-1LVAM-1926-SM-E6CIM 50-59 years, female 178.1
GTEX-1R9JW-1426-SM-DTX9K 30-39 years, female 175.4
GTEX-113JC-1926-SM-5N9GE 50-59 years, female 175.3
GTEX-WEY5-0826-SM-4LMIH 40-49 years, female 174.5
GTEX-1MA7W-1226-SM-HL9SB 20-29 years, female 174.4
GTEX-XV7Q-1626-SM-4BRWC 40-49 years, female 174.4
GTEX-T6MO-1226-SM-4DM5S 40-49 years, female 174.1
GTEX-TMMY-1926-SM-4DXUU 40-49 years, female 172.9
GTEX-11P81-2126-SM-5HL6N 30-39 years, female 171.3
GTEX-1117F-2526-SM-5GZY6 60-69 years, female 170.3
GTEX-U3ZN-0926-SM-4DXTU 30-39 years, female 169.3
GTEX-1EWIQ-2326-SM-7IGNF 70-79 years, female 169.2
GTEX-1C475-0526-SM-793AC 40-49 years, female 168.6
GTEX-139D8-2626-SM-GJ3QN 30-39 years, female 167.0
GTEX-146FH-2626-SM-5Q5E1 50-59 years, female 166.3
GTEX-1LKK1-1826-SM-GNIPA 50-59 years, female 166.2
GTEX-1CAMS-2326-SM-793CR 40-49 years, female 166.0
GTEX-14PN3-1626-SM-6AJAV 60-69 years, female 165.8
GTEX-11VI4-0726-SM-5GU5B 40-49 years, female 164.9
GTEX-S4P3-1126-SM-4AD52 50-59 years, female 164.6
GTEX-11XUK-1326-SM-5EQM4 40-49 years, female 164.3
GTEX-16NGA-1626-SM-72D6M 40-49 years, female 163.3
GTEX-1HCUA-1026-SM-A9SMI 50-59 years, female 161.9
GTEX-XYKS-2826-SM-H7OG8 60-69 years, female 160.3
GTEX-PWN1-2526-SM-48TDS 40-49 years, female 159.9
GTEX-1HBPH-2926-SM-9WPNX 40-49 years, female 159.5
GTEX-TSE9-2526-SM-4DXUS 60-69 years, female 158.4
GTEX-N7MT-1926-SM-3LK5N 60-69 years, female 158.3
GTEX-NPJ7-2526-SM-EV79A 60-69 years, female 157.3
GTEX-11TTK-2726-SM-5GU58 60-69 years, female 156.8
GTEX-ZC5H-2226-SM-4WAWS 40-49 years, female 156.2
GTEX-17JCI-2526-SM-7DHLB 60-69 years, female 156.1
GTEX-15UF6-2126-SM-6M46Z 70-79 years, female 156.0
GTEX-OHPK-2526-SM-3MJH9 50-59 years, female 154.4
GTEX-1399S-2326-SM-5K7YV 30-39 years, female 154.3
GTEX-1F5PL-1826-SM-7P8PP 40-49 years, female 154.1
GTEX-SN8G-2626-SM-EXUQT 50-59 years, female 153.5
GTEX-Q734-1426-SM-DTXFX 40-49 years, female 153.4
GTEX-ZE7O-2426-SM-57WD7 50-59 years, female 152.3
GTEX-13PL7-2726-SM-5L3GB 60-69 years, female 147.5
GTEX-WRHU-2926-SM-4MVNQ 50-59 years, female 147.0
GTEX-OHPN-2426-SM-E9TI5 60-69 years, female 146.8
GTEX-QDT8-2526-SM-48TYX 30-39 years, female 146.3
GTEX-1GN1U-2426-SM-9KNTU 50-59 years, female 146.0
GTEX-ZGAY-2226-SM-4YCCX 40-49 years, female 145.2
GTEX-14H4A-2426-SM-664OQ 40-49 years, female 144.8
GTEX-OHPL-2526-SM-3MJGT 60-69 years, female 144.0
GTEX-1JN1M-2326-SM-ARZNG 60-69 years, female 142.0
GTEX-1ICG6-1626-SM-ARL81 70-79 years, female 141.8
GTEX-1LH75-1726-SM-DHXKZ 50-59 years, female 141.6
GTEX-17F9Y-2326-SM-7DUFP 70-79 years, female 141.0
GTEX-12ZZX-1926-SM-5EGKC 40-49 years, female 140.8
GTEX-ZXES-0626-SM-5E45P 30-39 years, female 140.7
GTEX-ZV6S-1326-SM-59HJA 40-49 years, female 139.2
GTEX-W5X1-2226-SM-GRR1G 40-49 years, female 138.0
GTEX-131XG-2126-SM-5DUXG 50-59 years, female 137.8
GTEX-183WM-2126-SM-7LG4I 70-79 years, female 137.6
GTEX-145LS-2526-SM-5TDC9 60-69 years, female 136.2
GTEX-XUW1-0326-SM-4BOOR 50-59 years, female 135.9
GTEX-1LGOU-1126-SM-D3LAI 20-29 years, female 134.9
GTEX-13U4I-2026-SM-5LU3L 40-49 years, female 134.7
GTEX-1GF9U-1926-SM-7P8TZ 40-49 years, female 134.6
GTEX-15DYW-2926-SM-6PANA 60-69 years, female 134.5
GTEX-132AR-1626-SM-5EGHP 50-59 years, female 134.1
GTEX-XUZC-1226-SM-4BRVJ 30-39 years, female 133.8
GTEX-ZTPG-2226-SM-57WF9 20-29 years, female 133.7
GTEX-13OVI-0926-SM-5J1MI 60-69 years, female 133.6
GTEX-16MT8-2426-SM-GQ1DK 60-69 years, female 133.1
GTEX-1GMR8-2526-SM-7RHI9 50-59 years, female 133.0
GTEX-W5WG-1026-SM-4LMIF 50-59 years, female 132.2
GTEX-131YS-2426-SM-5J2OD 60-69 years, female 131.3
GTEX-WYVS-1426-SM-4ONCV 40-49 years, female 130.5
GTEX-14DAQ-2326-SM-5S2QX 60-69 years, female 129.8
GTEX-14AS3-1726-SM-5RQJV 40-49 years, female 129.7
GTEX-1QPFJ-1626-SM-DTX7X 30-39 years, female 129.0
GTEX-1F48J-2526-SM-7P8TU 50-59 years, female 128.1
GTEX-1399U-1526-SM-5J2N7 50-59 years, female 127.6
GTEX-RU1J-1426-SM-46MUV 20-29 years, female 127.3
GTEX-ZQG8-1126-SM-51MRL 60-69 years, female 125.7
GTEX-ZYVF-0326-SM-5GIES 50-59 years, female 125.4
GTEX-WYBS-2826-SM-GOQYI 60-69 years, female 125.2
GTEX-14BMU-1926-SM-5S2QC 20-29 years, female 124.8
GTEX-146FR-2426-SM-5NQAU 60-69 years, female 124.1
GTEX-O5YV-2226-SM-HM8V7 60-69 years, female 122.9
GTEX-1I4MK-1726-SM-ARL7O 50-59 years, female 122.8
GTEX-14PJM-2926-SM-69LOE 50-59 years, female 122.3
GTEX-UJHI-1326-SM-4IHJO 50-59 years, female 122.2
GTEX-1JMQL-2326-SM-CNNPV 50-59 years, female 122.1
GTEX-16NPV-2526-SM-6M483 50-59 years, female 121.8
GTEX-12WSJ-1326-SM-5GCOB 40-49 years, female 116.8
GTEX-P4PP-2526-SM-3P61P 30-39 years, female 115.5
GTEX-PLZ4-2726-SM-3P61A 50-59 years, female 114.5
GTEX-ZYY3-2626-SM-5N9DH 60-69 years, female 114.5
GTEX-ZAK1-2426-SM-EXOHM 50-59 years, female 114.1
GTEX-11GSP-2226-SM-5HL5Q 60-69 years, female 112.1
GTEX-1I1GT-1226-SM-B2LVK 60-69 years, female 111.5
GTEX-ZAJG-2926-SM-5HL8P 50-59 years, female 109.4
GTEX-147F3-1526-SM-5MR7L 50-59 years, female 108.3
GTEX-1PIEJ-1926-SM-EVYB7 20-29 years, female 105.4
GTEX-13W3W-2326-SM-5LU4Y 60-69 years, female 104.2
GTEX-1HCU6-2326-SM-ACKXP 60-69 years, female 102.9
GTEX-1MCC2-1126-SM-EVYD6 30-39 years, female 99.1
GTEX-WI4N-2626-SM-GPI8F 40-49 years, female 97.8
GTEX-11EM3-1826-SM-5A5KO 20-29 years, female 95.8
GTEX-14JG6-0726-SM-69LQH 30-39 years, female 95.7
GTEX-1S5ZU-2626-SM-E9TII 20-29 years, female 94.4
GTEX-1QCLZ-2226-SM-DTX7R 60-69 years, female 91.5
GTEX-RTLS-2126-SM-GPRWH 60-69 years, female 87.7
GTEX-1HFI7-1126-SM-A96S5 50-59 years, female 79.7
GTEX-1LGRB-2126-SM-COH48 50-59 years, female 79.7
GTEX-1IE54-2626-SM-CMKFY 40-49 years, female 72.5
GTEX-13N11-1526-SM-5L3FL 50-59 years, female 61.8
Show allShow less

VAGINA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

92.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Vagina
Scaled Tags Per Million: 92.3
FF:10204-103F6 68 years, female 92.3

Contact

  • NEWS ARTICLES
  • PRESS ROOM

The Project

  • INTRODUCTION
  • ORGANIZATION
  • PUBLICATIONS

The Human Protein Atlas

  • DOWNLOADABLE DATA
  • LICENCE & CITATION
  • HELP & FAQ
KAW logo The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.

Facebook logo X logo Bluesky logo Linkedin logo RSS feed logo contact@proteinatlas.org
GCBR logo Elixir core logo SciLifeLab logo Uppsala university logo KI logo KTH logo