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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
h
m
l
n
Glial cells:
Not detected
Neuronal cells:
Not detected
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
46.7
nTPM
HPA Brain:
20.0
nTPM
GTEx:
46.7
nTPM
FANTOM5:
46.7
Scaled Tags Per Million
Pig:
7.6
nTPM
Mouse:
18.1
nTPM
Allen mouse:
5.6
Expression energy
HIPPOCAMPUS - Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
Antibody CAB020825
Antibody CAB040557
Glial cells
Not detected
Not detected
Neuronal cells
Low
Not detected
HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
20.0
Sample id
Sample description
nTPM
Hippocampus nTPM: 18.8
1855
Male, age 76, left hemisphere
22.4
1898
Male, age 80, left hemisphere
21.7
1911
Female, age 85, right hemisphere
19.1
2529
Female, age 94, left hemisphere
17.2
2621
Female, age 67, right hemisphere
16.8
2148
Female, age 91, left hemisphere
15.7
Dentate gyrus nTPM: 20.0
2010
Male, age 76, both hemispheres
28.3
2530
Female, age 94, left hemisphere
24.6
2528
Male, age 74, both hemispheres
23.5
2531
Female, age 67, both hemispheres
16.7
2246
Female, age 85, both hemispheres
13.9
1927
Female, age 91, both hemispheres
13.2
Entorhinal gyrus nTPM: 12.2
2117
Female, age 91, right hemisphere
18.0
1787
Male, age 76, left hemisphere
17.4
2686
Male, age 75, right hemisphere
10.9
2764
Male, age 80, right hemisphere
9.7
1938
Female, age 85, left hemisphere
9.4
2613
Female, age 94, left hemisphere
7.8
Hippocampus, CA1 nTPM: 16.1
2045
Male, age 76, both hemispheres
21.1
1873
Female, age 85, both hemispheres
16.9
2082
Female, age 91, right hemisphere
16.8
2527
Male, age 74, both hemispheres
13.2
2749
Male, age 80, left hemisphere
12.8
Hippocampus, CA2 nTPM: 19.6
1940
Female, age 85, left hemisphere
25.6
2249
Male, age 74, both hemispheres
23.4
2437
Female, age 94, left hemisphere
19.8
1892
Male, age 76, both hemispheres
17.1
1963
Male, age 80, left hemisphere
16.4
2113
Female, age 91, right hemisphere
15.2
Hippocampus, CA3 nTPM: 17.5
1867
Male, age 76, both hemispheres
24.6
2861
Female, age 67, both hemispheres
19.7
2436
Male, age 74, both hemispheres
19.3
1891
Female, age 85, both hemispheres
15.7
2137
Male, age 80, left hemisphere
14.1
2620
Female, age 94, left hemisphere
11.5
Parahippocampal cortex nTPM: 12.4
2018
Male, age 76, both hemispheres
26.5
2250
Female, age 67, right hemisphere
17.5
1990
Female, age 91, right hemisphere
11.7
2245
Female, age 91, both hemispheres
11.4
2532
Female, age 72, left hemisphere
10.4
2622
Female, age 67, right hemisphere
9.7
1850
Male, age 80, both hemispheres
9.6
2692
Male, age 74, both hemispheres
9.3
2693
Female, age 94, both hemispheres
9.0
1933
Female, age 85, both hemispheres
8.5
Perirhinal gyrus nTPM: 11.6
2521
Female, age 94, right hemisphere
14.3
1841
Female, age 85, right hemisphere
11.6
1847
Female, age 91, left hemisphere
11.1
2848
Male, age 76, right hemisphere
10.7
1794
Male, age 80, right hemisphere
10.5
Subiculum nTPM: 15.7
2042
Male, age 76, both hemispheres
27.0
2729
Female, age 91, right hemisphere
17.5
2619
Male, age 74, both hemispheres
15.4
1901
Male, age 80, both hemispheres
13.5
1977
Female, age 85, both hemispheres
10.8
2438
Female, age 94, left hemisphere
10.1
HIPPOCAMPAL FORMATION - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
46.7
GTEx sample id
Sample description
nTPM
Brain - Hippocampus Average nTPM: 46.7
Samples: 197
Max nTPM: 256.9
Min nTPM: 9.5
Std nTPM: 33.2
Median nTPM: 37.2
GTEX-X4EP-0011-R1A-SM-3P624
60-69 years, female
256.9
GTEX-11TUW-0011-R1a-SM-DO92S
60-69 years, male
168.9
GTEX-1A32A-0011-R1a-SM-7P8SQ
50-59 years, female
164.4
GTEX-13RTL-0011-R1a-SM-5PNZ8
40-49 years, male
156.3
GTEX-13OW5-0011-R1b-SM-5L3GE
60-69 years, male
153.0
GTEX-13OVJ-0011-R1b-SM-5L3I6
50-59 years, female
144.4
GTEX-13N1W-0011-R1b-SM-5MR4T
70-79 years, male
127.6
GTEX-16NPV-0011-R1b-SM-7MGVZ
50-59 years, female
126.0
GTEX-13NYS-0011-R1b-SM-5MR55
60-69 years, male
123.1
GTEX-1CB4J-0011-R1a-SM-9WG64
60-69 years, male
121.1
GTEX-144GO-0011-R1a-SM-5PNWO
60-69 years, male
106.8
GTEX-16XZZ-0011-R1a-SM-7LTAH
60-69 years, male
103.5
GTEX-1CAV2-0011-R1a-SM-ARZML
40-49 years, female
101.5
GTEX-1GN73-0011-R1a-SM-CKZNT
60-69 years, male
94.6
GTEX-OHPN-0011-R1A-SM-2I5GB
60-69 years, female
93.7
GTEX-1EH9U-0011-R1b-SM-CJI2B
60-69 years, male
92.7
GTEX-14LZ3-0011-R1a-SM-69LP5
60-69 years, female
90.8
GTEX-1GZHY-0011-R1a-SM-CE6RR
50-59 years, female
87.8
GTEX-NPJ8-0011-R1a-SM-33HCB
40-49 years, male
86.8
GTEX-183WM-0011-R1a-SM-718A8
70-79 years, female
81.6
GTEX-1B996-0011-R1b-SM-7P8PO
60-69 years, male
80.2
GTEX-13FTY-0011-R1a-SM-5LZXE
40-49 years, female
79.6
GTEX-13OW8-0011-R1a-SM-5L3HI
60-69 years, male
77.0
GTEX-QVUS-0011-R1A-SM-3GAD2
60-69 years, female
73.5
GTEX-14BIM-0011-R1a-SM-69LQI
60-69 years, female
72.7
GTEX-131YS-0011-R1a-SM-5DUXC
60-69 years, female
71.7
GTEX-1E2YA-0011-R1b-SM-CJI29
50-59 years, male
71.5
GTEX-17EVQ-0011-R1a-SM-7189S
70-79 years, male
70.9
GTEX-1F6IF-0011-R1b-SM-9WG78
60-69 years, male
70.7
GTEX-1H1DG-0011-R1b-SM-CKZP1
70-79 years, male
70.6
GTEX-14PN4-0011-R1b-SM-69LP8
50-59 years, male
70.2
GTEX-132Q8-0011-R1a-SM-5EGLK
60-69 years, male
67.1
GTEX-139T8-0011-R1a-SM-5HL75
60-69 years, male
65.9
GTEX-14PQA-0011-R1b-SM-6EU1G
50-59 years, female
65.4
GTEX-13JVG-0011-R1a-SM-5KM32
60-69 years, male
63.3
GTEX-13NZ8-0011-R1b-SM-5KM3V
60-69 years, female
63.2
GTEX-13NZA-0011-R1b-SM-5LUAF
60-69 years, male
62.9
GTEX-UTHO-0011-R1A-SM-3GIJO
60-69 years, male
62.8
GTEX-WHSE-0011-R1A-SM-3P5ZK
20-29 years, male
61.8
GTEX-15UF6-0011-R1a-SM-9QEGH
70-79 years, female
61.8
GTEX-1GN2E-0011-R1b-SM-CE6RJ
60-69 years, male
61.5
GTEX-1H3VE-0011-R1a-SM-A9G1K
40-49 years, male
60.8
GTEX-13CF2-0011-R1a-SM-5LZY1
60-69 years, male
60.3
GTEX-13FHO-0011-R1b-SM-5KLZG
60-69 years, male
60.2
GTEX-11WQC-0011-R1b-SM-DO932
60-69 years, male
60.0
GTEX-13JUV-0011-R1a-SM-5LZY4
40-49 years, female
59.6
GTEX-1C6VQ-0011-R1a-SM-7P8Q2
50-59 years, male
59.4
GTEX-17F97-0011-R1b-SM-7IGM9
50-59 years, male
59.0
GTEX-13SLW-0011-R1a-SM-5S2W7
70-79 years, male
58.5
GTEX-14E7W-0011-R1b-SM-5YYAT
70-79 years, male
56.0
GTEX-13X6I-0011-R1b-SM-5PNZC
60-69 years, male
55.9
GTEX-PWO3-0011-R1A-SM-2I5EW
60-69 years, female
55.8
GTEX-145LS-0011-R1b-SM-5PNUP
60-69 years, female
55.6
GTEX-1E1VI-0011-R1a-SM-ARZMM
50-59 years, male
55.5
GTEX-1399T-0011-R1b-SM-5DUWN
60-69 years, male
55.2
GTEX-XMD1-0011-R1A-SM-4AT4C
60-69 years, male
54.7
GTEX-1GMR8-0011-R1b-SM-CJI2O
50-59 years, female
54.5
GTEX-QVJO-0011-R1A-SM-2S1QI
60-69 years, female
54.4
GTEX-NPJ7-0011-R1a-SM-3GACT
60-69 years, female
54.0
GTEX-ZE7O-0011-R1a-SM-57WDM
50-59 years, female
53.9
GTEX-1A3MX-0011-R1b-SM-7P8PH
60-69 years, male
53.9
GTEX-1GZ2Q-0011-R1a-SM-CJI2Y
40-49 years, male
52.9
GTEX-14C5O-0011-R1b-SM-6AJBW
60-69 years, male
52.6
GTEX-11ZVC-0011-R1b-SM-5BC6M
50-59 years, female
52.0
GTEX-T5JC-0011-R1A-SM-32PM6
20-29 years, male
51.7
GTEX-ZF28-0011-R1a-SM-4WWD1
60-69 years, male
51.0
GTEX-12ZZX-0011-R1a-SM-5EQ6B
40-49 years, female
50.6
GTEX-ZVZQ-0011-R1a-SM-57WBU
60-69 years, female
50.6
GTEX-1H23P-0011-R1a-SM-ACKVC
60-69 years, male
50.5
GTEX-1GN1U-0011-R1a-SM-CJI25
50-59 years, female
50.3
GTEX-YJ89-0011-R1a-SM-4RGLS
60-69 years, male
48.8
GTEX-11ZTS-0011-R1a-SM-5BC71
60-69 years, female
48.5
GTEX-17HII-0011-R1b-SM-7MGVW
50-59 years, male
48.1
GTEX-1212Z-0011-R1b-SM-5BC72
60-69 years, male
46.1
GTEX-12WSF-0011-R1a-SM-5DUVI
70-79 years, male
45.3
GTEX-1J1OQ-0011-R1a-SM-A9G1Z
40-49 years, female
44.9
GTEX-NL3H-0011-R1a-SM-48TDJ
60-69 years, male
44.4
GTEX-1F75W-0011-R1a-SM-ARU81
60-69 years, male
44.1
GTEX-1H4P4-0011-R1b-SM-CL54V
50-59 years, male
44.0
GTEX-X585-0011-R1B-SM-46MVE
50-59 years, male
43.6
GTEX-11ONC-0011-R1a-SM-57WD4
60-69 years, male
43.2
GTEX-13QJC-0011-R1b-SM-5S2UU
60-69 years, female
43.2
GTEX-N7MT-0011-R1a-SM-CNPO1
60-69 years, female
42.9
GTEX-17MF6-0011-R1a-SM-72D6O
40-49 years, male
42.7
GTEX-1J8Q2-0011-R1a-SM-D4P2D
60-69 years, male
42.3
GTEX-X4XX-0011-R1B-SM-3P622
60-69 years, male
42.2
GTEX-13S7M-0011-R1b-SM-5PNZE
60-69 years, female
41.8
GTEX-1GF9W-0011-R1a-SM-9QEIQ
60-69 years, male
41.8
GTEX-1B933-0011-R1b-SM-9QEGW
50-59 years, female
41.7
GTEX-1BAJH-0011-R1a-SM-7P8SV
70-79 years, male
41.6
GTEX-15DCD-0011-R1b-SM-6LPIJ
70-79 years, female
41.2
GTEX-1GF9V-0011-R1a-SM-CKZNQ
60-69 years, male
40.3
GTEX-11GSO-0011-R1b-SM-57WD3
60-69 years, male
39.7
GTEX-14LLW-0011-R1a-SM-5ZZVD
70-79 years, female
39.3
GTEX-1C64N-0011-R1b-SM-7P8Q7
50-59 years, male
39.1
GTEX-13RTJ-0011-R1a-SM-5O9D9
60-69 years, male
38.9
GTEX-13OVL-0011-R1a-SM-5L3H5
50-59 years, male
38.7
GTEX-15CHQ-0011-R1a-SM-COH27
60-69 years, male
37.7
GTEX-16GPK-0011-R1b-SM-7EWDH
60-69 years, male
37.2
GTEX-1F48J-0011-R1a-SM-9QEIC
50-59 years, female
37.0
GTEX-1H3NZ-0011-R1a-SM-CKZP5
60-69 years, male
36.9
GTEX-1HSKV-0011-R1b-SM-CMKH7
60-69 years, male
36.4
GTEX-14E6D-0011-R1b-SM-5YYAW
50-59 years, male
36.1
GTEX-1H1CY-0011-R1a-SM-CKZOZ
60-69 years, female
36.1
GTEX-1IKK5-0011-R1b-SM-CE6SQ
60-69 years, male
36.1
GTEX-1I1HK-0011-R1b-SM-CM2T7
60-69 years, male
35.5
GTEX-1EX96-0011-R1a-SM-CE6R5
50-59 years, male
35.4
GTEX-1A8G6-0011-R1a-SM-7P8PC
60-69 years, male
35.0
GTEX-TSE9-0011-R1A-SM-3DB7E
60-69 years, female
34.9
GTEX-1I1GS-0011-R1a-SM-CJI43
60-69 years, male
34.6
GTEX-13OW7-0011-R1b-SM-5L3HF
50-59 years, male
34.3
GTEX-QMR6-0011-R1A-SM-32PKW
50-59 years, male
32.8
GTEX-1HGF4-0011-R1a-SM-CJI3S
60-69 years, male
32.8
GTEX-13G51-0011-R1a-SM-5LZYR
60-69 years, male
32.1
GTEX-P44G-0011-R1A-SM-2I3FE
30-39 years, male
31.9
GTEX-1HSMO-0011-R1a-SM-CM2SV
60-69 years, male
31.9
GTEX-1I1GV-0011-R1a-SM-CL559
60-69 years, male
31.9
GTEX-QDT8-0011-R1A-SM-32PKS
30-39 years, female
31.8
GTEX-18A6Q-0011-R1b-SM-731DI
60-69 years, male
31.7
GTEX-13N2G-0011-R1b-SM-5MR3G
60-69 years, male
31.3
GTEX-WVLH-0011-R1A-SM-4MVOK
50-59 years, male
31.2
GTEX-11UD1-0011-R1b-SM-5BC7D
40-49 years, female
31.1
GTEX-13FHP-0011-R1b-SM-5K7XL
50-59 years, male
30.6
GTEX-14PJO-0011-R1b-SM-6AJAK
60-69 years, male
30.6
GTEX-16YQH-0011-R1a-SM-7LT8R
30-39 years, male
30.6
GTEX-13112-0011-R1b-SM-5HL7K
50-59 years, male
30.5
GTEX-17EVP-0011-R1a-SM-7DHLA
40-49 years, male
30.5
GTEX-1H3O1-0011-R1b-SM-CL554
60-69 years, male
30.5
GTEX-16Z82-0011-R1b-SM-7EPHZ
60-69 years, male
29.9
GTEX-1EMGI-0011-R1b-SM-9OSWZ
60-69 years, male
29.7
GTEX-11EI6-0011-R1a-SM-DO93L
60-69 years, male
29.6
GTEX-13QIC-0011-R1a-SM-5O9CJ
60-69 years, female
29.2
GTEX-1LB8K-0011-R1b-SM-EZ6MV
50-59 years, male
28.7
GTEX-WWYW-0011-R1A-SM-3TW8G
50-59 years, female
28.3
GTEX-ZUA1-0011-R1a-SM-4YCE2
40-49 years, male
27.8
GTEX-1EKGG-0011-R1b-SM-9QEI1
60-69 years, male
27.7
GTEX-1ICLZ-0011-R1b-SM-A9SM3
60-69 years, male
27.6
GTEX-17HHY-0011-R1a-SM-7189V
50-59 years, male
27.5
GTEX-1HBPI-0011-R1b-SM-A9SKF
50-59 years, male
27.4
GTEX-14PJM-0011-R1a-SM-CNPO3
50-59 years, female
27.3
GTEX-14ASI-0011-R1b-SM-5S2TY
60-69 years, male
26.6
GTEX-1HR98-0011-R1a-SM-ARZLQ
60-69 years, male
26.6
GTEX-13FXS-0011-R1a-SM-5K7U6
50-59 years, male
26.5
GTEX-1F6I4-0011-R1a-SM-9OSWU
60-69 years, male
25.7
GTEX-1B8L1-0011-R1a-SM-7P8SS
60-69 years, male
25.6
GTEX-1CB4G-0011-R1b-SM-9QEHT
60-69 years, male
25.6
GTEX-12WSM-0011-R1a-SM-5LZW6
60-69 years, male
25.3
GTEX-1H1ZS-0011-R1b-SM-A9G1E
70-79 years, male
24.9
GTEX-13PDP-0011-R1a-SM-5PNX5
60-69 years, male
24.2
GTEX-1I1GQ-0011-R1a-SM-CY8GG
50-59 years, male
24.2
GTEX-14JIY-0011-R1a-SM-68713
60-69 years, male
23.8
GTEX-Y8DK-0011-R1A-SM-4RGLO
60-69 years, male
23.2
GTEX-1EWIQ-0011-R1a-SM-9OSX7
70-79 years, female
23.0
GTEX-12WSD-0011-R1b-SM-5LZVY
60-69 years, female
22.9
GTEX-11GS4-0011-R1a-SM-DO129
60-69 years, male
22.9
GTEX-1IDJH-0011-R1b-SM-ARU6U
70-79 years, male
22.9
GTEX-145LU-0011-R1a-SM-5Q5CE
50-59 years, male
22.6
GTEX-13NYB-0011-R1b-SM-5KM4F
40-49 years, male
22.5
GTEX-1IY9M-0011-R1a-SM-EXURZ
60-69 years, male
22.2
GTEX-11GSP-0011-R1a-SM-9QEJ3
60-69 years, female
22.0
GTEX-1B8SF-0011-R1b-SM-7P8Q8
60-69 years, male
21.8
GTEX-1IOXB-0011-R1a-SM-D4P27
50-59 years, male
21.8
GTEX-17HG3-0011-R1a-SM-7LG6H
30-39 years, female
21.7
GTEX-S7SE-0011-R1A-SM-2XCDE
50-59 years, male
21.6
GTEX-12WSH-0011-R1a-SM-5GU5V
50-59 years, male
21.5
GTEX-1AX9I-0011-R1b-SM-7RHG2
60-69 years, male
21.4
GTEX-ZDXO-0011-R1a-SM-4WKF4
60-69 years, male
21.3
GTEX-P44H-0011-R1A-SM-3NM8J
40-49 years, male
20.9
GTEX-1C6VR-0011-R1a-SM-7MXUE
60-69 years, male
20.7
GTEX-17JCI-0011-R1b-SM-718A3
60-69 years, female
20.6
GTEX-ZAB4-0011-R1a-SM-4RGNO
40-49 years, male
20.5
GTEX-YFC4-0011-R1a-SM-4V6EH
40-49 years, female
19.9
GTEX-1313W-0011-R1b-SM-5EQ4A
50-59 years, female
19.6
GTEX-T6MN-0011-R1A-SM-32QOY
50-59 years, male
19.5
GTEX-1LG7Y-0011-R1a-SM-EYYWV
50-59 years, male
18.9
GTEX-N7MS-0011-R1a-SM-2HMJG
60-69 years, male
18.7
GTEX-PVOW-0011-R1A-SM-32PL6
40-49 years, male
18.1
GTEX-15ER7-0011-R1b-SM-7KUE1
20-29 years, female
17.9
GTEX-1GTWX-0011-R1a-SM-CE6RL
60-69 years, male
17.7
GTEX-R55E-0011-R1A-SM-2TC6N
20-29 years, male
17.6
GTEX-13OW6-0011-R1a-SM-5L3HQ
50-59 years, male
17.4
GTEX-WZTO-0011-R1B-SM-3NMAR
40-49 years, male
17.3
GTEX-11DXW-0011-R1a-SM-DNZZD
40-49 years, male
17.2
GTEX-WL46-0011-R1A-SM-3LK6M
50-59 years, male
16.9
GTEX-144GL-0011-R1a-SM-5PNZ5
50-59 years, male
16.7
GTEX-139TT-0011-R1a-SM-5LZVD
60-69 years, male
16.2
GTEX-1F75A-0011-R1b-SM-CE6RA
50-59 years, male
16.2
GTEX-13O3Q-0011-R1b-SM-5KM3L
50-59 years, male
15.9
GTEX-14ABY-0011-R1a-SM-6EU2W
50-59 years, male
15.8
GTEX-131XH-0011-R1a-SM-5DUWA
50-59 years, male
15.2
GTEX-13O3O-0011-R1b-SM-5KM2K
60-69 years, female
15.0
GTEX-RNOR-0011-R1A-SM-CNNP5
50-59 years, female
14.5
GTEX-Q2AG-0011-R1A-SM-2HMJI
40-49 years, female
14.4
GTEX-145MH-0011-R1b-SM-5PNWY
50-59 years, male
12.4
GTEX-13FLW-0011-R1b-SM-5LZX2
50-59 years, male
11.3
GTEX-1HT8W-0011-R1b-SM-CJI3V
30-39 years, male
10.6
GTEX-12WSE-0011-R1b-SM-5GU4V
20-29 years, male
9.5
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
18.1
Mouse sample
Sample description
nTPM
Entorhinal cortex nTPM: 18.1
Samples: 4
Max nTPM: 19.8
Min nTPM: 16.5
Sample A
Male
16.5
Sample B
Male
17.0
Sample C
Female
19.8
Sample D
Female
18.9
Hippocampal formation nTPM: 18.1
Samples: 4
Max nTPM: 19.6
Min nTPM: 16.4
Sample A
Male
19.1
Sample B
Male
17.3
Sample C
Female
16.4
Sample D
Female
19.6
HIPPOCAMPAL FORMATION - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.