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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
h
m
l
n
Glial cells:
Not detected
Neuronal cells:
Medium
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
28.7
nTPM
HPA Brain:
11.6
nTPM
GTEx:
28.7
nTPM
FANTOM5:
12.3
Scaled Tags Per Million
Pig:
41.1
nTPM
Mouse:
41.0
nTPM
Allen mouse:
12.0
Expression energy
HIPPOCAMPUS - Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
Antibody HPA046871
Glial cells
Not detected
Neuronal cells
Medium
HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
11.6
Sample id
Sample description
nTPM
Hippocampus nTPM: 7.5
1898
Male, age 80, left hemisphere
10.4
2529
Female, age 94, left hemisphere
7.9
2148
Female, age 91, left hemisphere
7.8
1911
Female, age 85, right hemisphere
7.5
2621
Female, age 67, right hemisphere
6.4
1855
Male, age 76, left hemisphere
4.9
Dentate gyrus nTPM: 8.4
2531
Female, age 67, both hemispheres
10.5
2246
Female, age 85, both hemispheres
10.4
2528
Male, age 74, both hemispheres
10.1
2530
Female, age 94, left hemisphere
7.0
2010
Male, age 76, both hemispheres
6.7
1927
Female, age 91, both hemispheres
5.7
Entorhinal gyrus nTPM: 11.6
1787
Male, age 76, left hemisphere
16.3
2613
Female, age 94, left hemisphere
15.8
2686
Male, age 75, right hemisphere
11.5
2764
Male, age 80, right hemisphere
10.6
2117
Female, age 91, right hemisphere
9.2
1938
Female, age 85, left hemisphere
6.2
Hippocampus, CA1 nTPM: 6.8
2749
Male, age 80, left hemisphere
11.6
1873
Female, age 85, both hemispheres
7.8
2082
Female, age 91, right hemisphere
5.8
2527
Male, age 74, both hemispheres
5.7
2045
Male, age 76, both hemispheres
2.9
Hippocampus, CA2 nTPM: 8.4
1963
Male, age 80, left hemisphere
11.5
2113
Female, age 91, right hemisphere
8.6
2437
Female, age 94, left hemisphere
8.5
1940
Female, age 85, left hemisphere
7.6
2249
Male, age 74, both hemispheres
7.5
1892
Male, age 76, both hemispheres
6.6
Hippocampus, CA3 nTPM: 7.2
2861
Female, age 67, both hemispheres
10.8
2620
Female, age 94, left hemisphere
8.6
2436
Male, age 74, both hemispheres
8.5
2137
Male, age 80, left hemisphere
5.2
1891
Female, age 85, both hemispheres
5.1
1867
Male, age 76, both hemispheres
4.8
Parahippocampal cortex nTPM: 7.1
2693
Female, age 94, both hemispheres
10.4
2692
Male, age 74, both hemispheres
9.2
1990
Female, age 91, right hemisphere
8.5
1850
Male, age 80, both hemispheres
8.4
2250
Female, age 67, right hemisphere
7.4
2622
Female, age 67, right hemisphere
7.2
2532
Female, age 72, left hemisphere
7.1
2245
Female, age 91, both hemispheres
5.5
1933
Female, age 85, both hemispheres
4.9
2018
Male, age 76, both hemispheres
2.9
Perirhinal gyrus nTPM: 7.7
2848
Male, age 76, right hemisphere
9.2
1794
Male, age 80, right hemisphere
9.1
2521
Female, age 94, right hemisphere
8.0
1841
Female, age 85, right hemisphere
7.8
1847
Female, age 91, left hemisphere
4.5
Subiculum nTPM: 6.1
1977
Female, age 85, both hemispheres
8.1
2042
Male, age 76, both hemispheres
7.8
2619
Male, age 74, both hemispheres
7.8
1901
Male, age 80, both hemispheres
5.5
2729
Female, age 91, right hemisphere
5.4
2438
Female, age 94, left hemisphere
1.7
HIPPOCAMPAL FORMATION - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
28.7
GTEx sample id
Sample description
nTPM
Brain - Hippocampus Average nTPM: 28.7
Samples: 197
Max nTPM: 45.3
Min nTPM: 11.7
Std nTPM: 5.2
Median nTPM: 29.3
GTEX-13QIC-0011-R1a-SM-5O9CJ
60-69 years, female
45.3
GTEX-13OVL-0011-R1a-SM-5L3H5
50-59 years, male
44.3
GTEX-11ONC-0011-R1a-SM-57WD4
60-69 years, male
40.4
GTEX-13OW5-0011-R1b-SM-5L3GE
60-69 years, male
38.7
GTEX-15ER7-0011-R1b-SM-7KUE1
20-29 years, female
38.4
GTEX-14LZ3-0011-R1a-SM-69LP5
60-69 years, female
38.1
GTEX-1GTWX-0011-R1a-SM-CE6RL
60-69 years, male
38.1
GTEX-15CHQ-0011-R1a-SM-COH27
60-69 years, male
37.8
GTEX-13QJC-0011-R1b-SM-5S2UU
60-69 years, female
37.4
GTEX-13RTJ-0011-R1a-SM-5O9D9
60-69 years, male
37.4
GTEX-1LB8K-0011-R1b-SM-EZ6MV
50-59 years, male
37.4
GTEX-X4XX-0011-R1B-SM-3P622
60-69 years, male
37.0
GTEX-11GSP-0011-R1a-SM-9QEJ3
60-69 years, female
36.4
GTEX-13JVG-0011-R1a-SM-5KM32
60-69 years, male
36.3
GTEX-1E2YA-0011-R1b-SM-CJI29
50-59 years, male
36.0
GTEX-14BIM-0011-R1a-SM-69LQI
60-69 years, female
35.8
GTEX-18A6Q-0011-R1b-SM-731DI
60-69 years, male
35.7
GTEX-1C6VQ-0011-R1a-SM-7P8Q2
50-59 years, male
35.5
GTEX-145LS-0011-R1b-SM-5PNUP
60-69 years, female
35.4
GTEX-17EVP-0011-R1a-SM-7DHLA
40-49 years, male
35.0
GTEX-QVUS-0011-R1A-SM-3GAD2
60-69 years, female
34.9
GTEX-15UF6-0011-R1a-SM-9QEGH
70-79 years, female
34.9
GTEX-1F48J-0011-R1a-SM-9QEIC
50-59 years, female
34.7
GTEX-1I1GQ-0011-R1a-SM-CY8GG
50-59 years, male
34.7
GTEX-1GZHY-0011-R1a-SM-CE6RR
50-59 years, female
34.5
GTEX-14PJO-0011-R1b-SM-6AJAK
60-69 years, male
34.1
GTEX-1GN1U-0011-R1a-SM-CJI25
50-59 years, female
34.1
GTEX-1HGF4-0011-R1a-SM-CJI3S
60-69 years, male
34.0
GTEX-17HII-0011-R1b-SM-7MGVW
50-59 years, male
33.8
GTEX-139T8-0011-R1a-SM-5HL75
60-69 years, male
33.7
GTEX-14E7W-0011-R1b-SM-5YYAT
70-79 years, male
33.6
GTEX-1I1GS-0011-R1a-SM-CJI43
60-69 years, male
33.6
GTEX-17EVQ-0011-R1a-SM-7189S
70-79 years, male
33.0
GTEX-1HBPI-0011-R1b-SM-A9SKF
50-59 years, male
33.0
GTEX-1IDJH-0011-R1b-SM-ARU6U
70-79 years, male
33.0
GTEX-1I1GV-0011-R1a-SM-CL559
60-69 years, male
32.9
GTEX-16Z82-0011-R1b-SM-7EPHZ
60-69 years, male
32.8
GTEX-XMD1-0011-R1A-SM-4AT4C
60-69 years, male
32.8
GTEX-12WSM-0011-R1a-SM-5LZW6
60-69 years, male
32.7
GTEX-183WM-0011-R1a-SM-718A8
70-79 years, female
32.7
GTEX-13G51-0011-R1a-SM-5LZYR
60-69 years, male
32.5
GTEX-1C6VR-0011-R1a-SM-7MXUE
60-69 years, male
32.5
GTEX-N7MT-0011-R1a-SM-CNPO1
60-69 years, female
32.5
GTEX-Y8DK-0011-R1A-SM-4RGLO
60-69 years, male
32.4
GTEX-131XH-0011-R1a-SM-5DUWA
50-59 years, male
32.2
GTEX-13S7M-0011-R1b-SM-5PNZE
60-69 years, female
32.2
GTEX-1IY9M-0011-R1a-SM-EXURZ
60-69 years, male
32.2
GTEX-ZDXO-0011-R1a-SM-4WKF4
60-69 years, male
32.0
GTEX-13112-0011-R1b-SM-5HL7K
50-59 years, male
31.9
GTEX-1F6IF-0011-R1b-SM-9WG78
60-69 years, male
31.8
GTEX-1ICLZ-0011-R1b-SM-A9SM3
60-69 years, male
31.8
GTEX-13OW7-0011-R1b-SM-5L3HF
50-59 years, male
31.7
GTEX-17F97-0011-R1b-SM-7IGM9
50-59 years, male
31.7
GTEX-1J1OQ-0011-R1a-SM-A9G1Z
40-49 years, female
31.6
GTEX-13FTY-0011-R1a-SM-5LZXE
40-49 years, female
31.5
GTEX-1E1VI-0011-R1a-SM-ARZMM
50-59 years, male
31.5
GTEX-1H3VE-0011-R1a-SM-A9G1K
40-49 years, male
31.5
GTEX-1EKGG-0011-R1b-SM-9QEI1
60-69 years, male
31.4
GTEX-1I1HK-0011-R1b-SM-CM2T7
60-69 years, male
31.4
GTEX-16XZZ-0011-R1a-SM-7LTAH
60-69 years, male
31.3
GTEX-14PJM-0011-R1a-SM-CNPO3
50-59 years, female
31.3
GTEX-132Q8-0011-R1a-SM-5EGLK
60-69 years, male
31.2
GTEX-1EX96-0011-R1a-SM-CE6R5
50-59 years, male
31.2
GTEX-WHSE-0011-R1A-SM-3P5ZK
20-29 years, male
31.1
GTEX-11WQC-0011-R1b-SM-DO932
60-69 years, male
30.9
GTEX-Q2AG-0011-R1A-SM-2HMJI
40-49 years, female
30.8
GTEX-11GS4-0011-R1a-SM-DO129
60-69 years, male
30.7
GTEX-T5JC-0011-R1A-SM-32PM6
20-29 years, male
30.6
GTEX-1A8G6-0011-R1a-SM-7P8PC
60-69 years, male
30.6
GTEX-1EH9U-0011-R1b-SM-CJI2B
60-69 years, male
30.4
GTEX-1399T-0011-R1b-SM-5DUWN
60-69 years, male
30.3
GTEX-13FHO-0011-R1b-SM-5KLZG
60-69 years, male
30.3
GTEX-1J8Q2-0011-R1a-SM-D4P2D
60-69 years, male
30.3
GTEX-16NPV-0011-R1b-SM-7MGVZ
50-59 years, female
30.2
GTEX-R55E-0011-R1A-SM-2TC6N
20-29 years, male
30.1
GTEX-13O3Q-0011-R1b-SM-5KM3L
50-59 years, male
30.0
GTEX-UTHO-0011-R1A-SM-3GIJO
60-69 years, male
30.0
GTEX-1F6I4-0011-R1a-SM-9OSWU
60-69 years, male
30.0
GTEX-17HHY-0011-R1a-SM-7189V
50-59 years, male
29.9
GTEX-P44G-0011-R1A-SM-2I3FE
30-39 years, male
29.9
GTEX-14JIY-0011-R1a-SM-68713
60-69 years, male
29.7
GTEX-N7MS-0011-R1a-SM-2HMJG
60-69 years, male
29.7
GTEX-S7SE-0011-R1A-SM-2XCDE
50-59 years, male
29.7
GTEX-YFC4-0011-R1a-SM-4V6EH
40-49 years, female
29.7
GTEX-1GZ2Q-0011-R1a-SM-CJI2Y
40-49 years, male
29.7
GTEX-12WSD-0011-R1b-SM-5LZVY
60-69 years, female
29.6
GTEX-17HG3-0011-R1a-SM-7LG6H
30-39 years, female
29.6
GTEX-1H3NZ-0011-R1a-SM-CKZP5
60-69 years, male
29.6
GTEX-11GSO-0011-R1b-SM-57WD3
60-69 years, male
29.5
GTEX-13N2G-0011-R1b-SM-5MR3G
60-69 years, male
29.5
GTEX-1EWIQ-0011-R1a-SM-9OSX7
70-79 years, female
29.5
GTEX-13OW8-0011-R1a-SM-5L3HI
60-69 years, male
29.4
GTEX-14E6D-0011-R1b-SM-5YYAW
50-59 years, male
29.4
GTEX-11EI6-0011-R1a-SM-DO93L
60-69 years, male
29.4
GTEX-1B8SF-0011-R1b-SM-7P8Q8
60-69 years, male
29.4
GTEX-11ZVC-0011-R1b-SM-5BC6M
50-59 years, female
29.3
GTEX-13OW6-0011-R1a-SM-5L3HQ
50-59 years, male
29.3
GTEX-WL46-0011-R1A-SM-3LK6M
50-59 years, male
29.3
GTEX-WVLH-0011-R1A-SM-4MVOK
50-59 years, male
29.3
GTEX-1212Z-0011-R1b-SM-5BC72
60-69 years, male
29.1
GTEX-1IKK5-0011-R1b-SM-CE6SQ
60-69 years, male
29.1
GTEX-13JUV-0011-R1a-SM-5LZY4
40-49 years, female
29.0
GTEX-15DCD-0011-R1b-SM-6LPIJ
70-79 years, female
29.0
GTEX-17JCI-0011-R1b-SM-718A3
60-69 years, female
29.0
GTEX-1B933-0011-R1b-SM-9QEGW
50-59 years, female
29.0
GTEX-13FXS-0011-R1a-SM-5K7U6
50-59 years, male
28.9
GTEX-1H1ZS-0011-R1b-SM-A9G1E
70-79 years, male
28.9
GTEX-1CB4G-0011-R1b-SM-9QEHT
60-69 years, male
28.8
GTEX-13NZA-0011-R1b-SM-5LUAF
60-69 years, male
28.7
GTEX-1F75A-0011-R1b-SM-CE6RA
50-59 years, male
28.6
GTEX-1F75W-0011-R1a-SM-ARU81
60-69 years, male
28.6
GTEX-13X6I-0011-R1b-SM-5PNZC
60-69 years, male
28.5
GTEX-13N1W-0011-R1b-SM-5MR4T
70-79 years, male
28.4
GTEX-16GPK-0011-R1b-SM-7EWDH
60-69 years, male
28.4
GTEX-1HSKV-0011-R1b-SM-CMKH7
60-69 years, male
28.3
GTEX-1GF9V-0011-R1a-SM-CKZNQ
60-69 years, male
28.2
GTEX-12ZZX-0011-R1a-SM-5EQ6B
40-49 years, female
28.1
GTEX-1BAJH-0011-R1a-SM-7P8SV
70-79 years, male
27.9
GTEX-13SLW-0011-R1a-SM-5S2W7
70-79 years, male
27.8
GTEX-1GN2E-0011-R1b-SM-CE6RJ
60-69 years, male
27.8
GTEX-1H1DG-0011-R1b-SM-CKZP1
70-79 years, male
27.8
GTEX-12WSE-0011-R1b-SM-5GU4V
20-29 years, male
27.5
GTEX-1EMGI-0011-R1b-SM-9OSWZ
60-69 years, male
27.5
GTEX-14PQA-0011-R1b-SM-6EU1G
50-59 years, female
27.4
GTEX-YJ89-0011-R1a-SM-4RGLS
60-69 years, male
27.4
GTEX-ZAB4-0011-R1a-SM-4RGNO
40-49 years, male
27.4
GTEX-NPJ7-0011-R1a-SM-3GACT
60-69 years, female
27.1
GTEX-1H4P4-0011-R1b-SM-CL54V
50-59 years, male
27.1
GTEX-1B996-0011-R1b-SM-7P8PO
60-69 years, male
27.0
GTEX-ZUA1-0011-R1a-SM-4YCE2
40-49 years, male
26.9
GTEX-1AX9I-0011-R1b-SM-7RHG2
60-69 years, male
26.9
GTEX-144GO-0011-R1a-SM-5PNWO
60-69 years, male
26.8
GTEX-13NYB-0011-R1b-SM-5KM4F
40-49 years, male
26.7
GTEX-13PDP-0011-R1a-SM-5PNX5
60-69 years, male
26.7
GTEX-13RTL-0011-R1a-SM-5PNZ8
40-49 years, male
26.7
GTEX-139TT-0011-R1a-SM-5LZVD
60-69 years, male
26.6
GTEX-14ASI-0011-R1b-SM-5S2TY
60-69 years, male
26.6
GTEX-11DXW-0011-R1a-SM-DNZZD
40-49 years, male
26.6
GTEX-1GF9W-0011-R1a-SM-9QEIQ
60-69 years, male
26.6
GTEX-ZF28-0011-R1a-SM-4WWD1
60-69 years, male
26.3
GTEX-14C5O-0011-R1b-SM-6AJBW
60-69 years, male
26.1
GTEX-1C64N-0011-R1b-SM-7P8Q7
50-59 years, male
26.1
GTEX-1B8L1-0011-R1a-SM-7P8SS
60-69 years, male
25.9
GTEX-12WSF-0011-R1a-SM-5DUVI
70-79 years, male
25.8
GTEX-X585-0011-R1B-SM-46MVE
50-59 years, male
25.8
GTEX-14PN4-0011-R1b-SM-69LP8
50-59 years, male
25.7
GTEX-1H1CY-0011-R1a-SM-CKZOZ
60-69 years, female
25.7
GTEX-1313W-0011-R1b-SM-5EQ4A
50-59 years, female
25.6
GTEX-QVJO-0011-R1A-SM-2S1QI
60-69 years, female
25.5
GTEX-RNOR-0011-R1A-SM-CNNP5
50-59 years, female
25.5
GTEX-1H23P-0011-R1a-SM-ACKVC
60-69 years, male
25.2
GTEX-144GL-0011-R1a-SM-5PNZ5
50-59 years, male
25.0
GTEX-1GMR8-0011-R1b-SM-CJI2O
50-59 years, female
25.0
GTEX-1IOXB-0011-R1a-SM-D4P27
50-59 years, male
25.0
GTEX-145LU-0011-R1a-SM-5Q5CE
50-59 years, male
24.9
GTEX-131YS-0011-R1a-SM-5DUXC
60-69 years, female
24.8
GTEX-13FLW-0011-R1b-SM-5LZX2
50-59 years, male
24.8
GTEX-13FHP-0011-R1b-SM-5K7XL
50-59 years, male
24.5
GTEX-17MF6-0011-R1a-SM-72D6O
40-49 years, male
24.4
GTEX-WWYW-0011-R1A-SM-3TW8G
50-59 years, female
24.3
GTEX-1HSMO-0011-R1a-SM-CM2SV
60-69 years, male
24.2
GTEX-1H3O1-0011-R1b-SM-CL554
60-69 years, male
24.1
GTEX-PVOW-0011-R1A-SM-32PL6
40-49 years, male
24.0
GTEX-145MH-0011-R1b-SM-5PNWY
50-59 years, male
23.9
GTEX-WZTO-0011-R1B-SM-3NMAR
40-49 years, male
23.8
GTEX-11TUW-0011-R1a-SM-DO92S
60-69 years, male
23.6
GTEX-ZVZQ-0011-R1a-SM-57WBU
60-69 years, female
23.5
GTEX-13CF2-0011-R1a-SM-5LZY1
60-69 years, male
23.4
GTEX-1LG7Y-0011-R1a-SM-EYYWV
50-59 years, male
23.2
GTEX-X4EP-0011-R1A-SM-3P624
60-69 years, female
23.0
GTEX-ZE7O-0011-R1a-SM-57WDM
50-59 years, female
22.6
GTEX-1HR98-0011-R1a-SM-ARZLQ
60-69 years, male
22.3
GTEX-T6MN-0011-R1A-SM-32QOY
50-59 years, male
22.2
GTEX-NPJ8-0011-R1a-SM-33HCB
40-49 years, male
22.1
GTEX-P44H-0011-R1A-SM-3NM8J
40-49 years, male
22.1
GTEX-1CB4J-0011-R1a-SM-9WG64
60-69 years, male
21.6
GTEX-TSE9-0011-R1A-SM-3DB7E
60-69 years, female
21.5
GTEX-11ZTS-0011-R1a-SM-5BC71
60-69 years, female
21.4
GTEX-13O3O-0011-R1b-SM-5KM2K
60-69 years, female
21.4
GTEX-PWO3-0011-R1A-SM-2I5EW
60-69 years, female
21.4
GTEX-NL3H-0011-R1a-SM-48TDJ
60-69 years, male
21.3
GTEX-QDT8-0011-R1A-SM-32PKS
30-39 years, female
21.3
GTEX-1A3MX-0011-R1b-SM-7P8PH
60-69 years, male
21.3
GTEX-11UD1-0011-R1b-SM-5BC7D
40-49 years, female
21.1
GTEX-13OVJ-0011-R1b-SM-5L3I6
50-59 years, female
20.9
GTEX-1HT8W-0011-R1b-SM-CJI3V
30-39 years, male
20.3
GTEX-13NYS-0011-R1b-SM-5MR55
60-69 years, male
20.2
GTEX-14ABY-0011-R1a-SM-6EU2W
50-59 years, male
20.2
GTEX-12WSH-0011-R1a-SM-5GU5V
50-59 years, male
19.2
GTEX-16YQH-0011-R1a-SM-7LT8R
30-39 years, male
18.7
GTEX-QMR6-0011-R1A-SM-32PKW
50-59 years, male
18.2
GTEX-13NZ8-0011-R1b-SM-5KM3V
60-69 years, female
17.7
GTEX-OHPN-0011-R1A-SM-2I5GB
60-69 years, female
17.5
GTEX-1GN73-0011-R1a-SM-CKZNT
60-69 years, male
17.2
GTEX-1CAV2-0011-R1a-SM-ARZML
40-49 years, female
17.1
GTEX-1A32A-0011-R1a-SM-7P8SQ
50-59 years, female
15.5
GTEX-14LLW-0011-R1a-SM-5ZZVD
70-79 years, female
11.7
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
41.0
Mouse sample
Sample description
nTPM
Entorhinal cortex nTPM: 33.9
Samples: 4
Max nTPM: 37.3
Min nTPM: 32.1
Sample A
Male
32.1
Sample B
Male
33.6
Sample C
Female
37.3
Sample D
Female
32.7
Hippocampal formation nTPM: 41.0
Samples: 4
Max nTPM: 47.5
Min nTPM: 35.0
Sample A
Male
35.0
Sample B
Male
43.7
Sample C
Female
37.9
Sample D
Female
47.5
HIPPOCAMPAL FORMATION - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.