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A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
74.8
nTPM
Monaco:
301.2
nTPM
Schmiedel:
163.2
TPM
T-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
74.8
HPA sample
nTPM
gdT-cell nTPM: 40.7
Samples: 6
Max nTPM: 58.5
Min nTPM: 24.6
P10809_1007
31.2
P10809_1022
24.6
P10809_1041
39.9
P10809_1060
41.2
P10809_1077
58.5
P10809_1098
48.9
MAIT T-cell nTPM: 52.0
Samples: 6
Max nTPM: 61.1
Min nTPM: 48.2
P10809_1006
49.2
P10809_1024
50.2
P10809_1043
49.0
P10809_1062
61.1
P10809_1083
48.2
P10809_1097
54.1
Memory CD4 T-cell nTPM: 60.2
Samples: 6
Max nTPM: 84.1
Min nTPM: 37.7
P10809_1014
59.8
P10809_1026
37.7
P10809_1045
47.6
P10809_1064
72.2
P10809_1086
84.1
P10809_1113
59.9
Memory CD8 T-cell nTPM: 47.7
Samples: 5
Max nTPM: 68.0
Min nTPM: 27.0
P10809_1012
44.6
P10809_1027
37.3
P10809_1046
27.0
P10809_1065
68.0
P10809_1111
61.7
Naive CD4 T-cell nTPM: 52.5
Samples: 6
Max nTPM: 73.2
Min nTPM: 39.3
P10809_1015
60.6
P10809_1030
39.3
P10809_1049
45.5
P10809_1068
54.0
P10809_1085
73.2
P10809_1112
42.4
Naive CD8 T-cell nTPM: 59.6
Samples: 6
Max nTPM: 102.8
Min nTPM: 42.8
P10809_1016
42.8
P10809_1031
46.5
P10809_1050
58.6
P10809_1069
60.9
P10809_1087
102.8
P10809_1110
46.1
T-reg nTPM: 74.8
Samples: 6
Max nTPM: 83.7
Min nTPM: 55.5
P10809_1018
82.2
P10809_1037
55.5
P10809_1056
83.7
P10809_1075
71.2
P10809_1094
73.2
P10809_1106
82.9
T-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
301.2
Monaco sample
nTPM
Central memory CD8 T-cell nTPM: 271.1
Samples: 4
Max nTPM: 317.3
Min nTPM: 240.9
RHH5202_R3573
317.3
RHH5230_R3602
240.9
RHH5259_R3631
256.6
RHH5288_R3660
269.6
Effector memory CD8 T-cell nTPM: 270.7
Samples: 4
Max nTPM: 275.9
Min nTPM: 265.1
RHH5203_R3574
270.1
RHH5231_R3603
271.7
RHH5260_R3632
265.1
RHH5289_R3661
275.9
MAIT T-cell nTPM: 268.7
Samples: 4
Max nTPM: 285.3
Min nTPM: 259.8
RHH5233_R3605
259.8
RHH5205_R3576
261.5
RHH5262_R3634
285.3
RHH5297_R3663
268.0
Memory CD4 T-cell TFH nTPM: 283.8
Samples: 4
Max nTPM: 349.9
Min nTPM: 233.1
RHH5300_R3666
234.8
RHH5236_R3608
349.9
RHH5265_R3637
233.1
RHH5208_R3579
317.2
Memory CD4 T-cell Th1 nTPM: 258.7
Samples: 4
Max nTPM: 290.5
Min nTPM: 222.2
RHH5210_R3581
257.1
RHH5302_R3668
290.5
RHH5238_R3610
222.2
RHH5267_R3639
264.8
Memory CD4 T-cell Th1/Th17 nTPM: 288.1
Samples: 4
Max nTPM: 318.7
Min nTPM: 239.6
RHH5303_R3669
311.3
RHH5211_R3582
282.8
RHH5239_R3611
318.7
RHH5268_R3640
239.6
Memory CD4 T-cell Th17 nTPM: 301.3
Samples: 4
Max nTPM: 344.1
Min nTPM: 282.8
RHH5304_R3670
291.9
RHH5212_R3583
282.8
RHH5240_R3612
344.1
RHH5269_R3641
286.2
Memory CD4 T-cell Th2 nTPM: 280.7
Samples: 4
Max nTPM: 299.1
Min nTPM: 267.8
RHH5305_R3671
267.8
RHH5213_R3584
276.4
RHH5241_R3613
299.1
RHH5270_R3642
279.5
Naive CD4 T-cell nTPM: 256.7
Samples: 4
Max nTPM: 271.7
Min nTPM: 242.1
RHH5306_R3672
261.6
RHH5214_R3585
271.7
RHH5242_R3614
242.1
RHH5271_R3643
251.5
Naive CD8 T-cell nTPM: 229.1
Samples: 4
Max nTPM: 244.4
Min nTPM: 214.2
RHH5201_R3572
234.2
RHH5229_R3601
223.5
RHH5258_R3630
214.2
RHH5287_R3659
244.4
Non-Vd2 gdTCR nTPM: 252.1
Samples: 4
Max nTPM: 297.8
Min nTPM: 213.8
RHH5235_R3607
220.9
RHH5264_R3636
297.8
RHH5207_R3578
275.7
RHH5299_R3665
213.8
T-reg nTPM: 268.5
Samples: 4
Max nTPM: 311.5
Min nTPM: 211.6
RHH5301_R3667
259.1
RHH5237_R3609
311.5
RHH5266_R3638
211.6
RHH5209_R3580
291.8
Terminal effector memory CD4 T-cell nTPM: 248.2
Samples: 2
Max nTPM: 268.2
Min nTPM: 228.2
RHH5243_R3615
228.2
RHH5272_R3644
268.2
Terminal effector memory CD8 T-cell nTPM: 267.8
Samples: 4
Max nTPM: 273.5
Min nTPM: 258.7
RHH5232_R3604
272.7
RHH5204_R3575
266.1
RHH5261_R3633
273.5
RHH5296_R3662
258.7
Vd2 gdTCR nTPM: 263.5
Samples: 4
Max nTPM: 308.7
Min nTPM: 219.9
RHH5234_R3606
219.9
RHH5206_R3577
290.1
RHH5263_R3635
308.7
RHH5298_R3664
235.2
T-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
The Human Protein Atlas project is funded
