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A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
44.1
nTPM
Monaco:
91.4
nTPM
Schmiedel:
231.4
TPM
T-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
44.1
HPA sample
nTPM
gdT-cell nTPM: 34.7
Samples: 6
Max nTPM: 47.7
Min nTPM: 29.1
P10809_1007
29.3
P10809_1022
47.7
P10809_1041
33.4
P10809_1060
30.4
P10809_1077
29.1
P10809_1098
38.4
MAIT T-cell nTPM: 44.1
Samples: 6
Max nTPM: 65.9
Min nTPM: 32.7
P10809_1006
35.0
P10809_1024
65.9
P10809_1043
50.7
P10809_1062
44.0
P10809_1083
36.3
P10809_1097
32.7
Memory CD4 T-cell nTPM: 34.5
Samples: 6
Max nTPM: 40.4
Min nTPM: 24.9
P10809_1014
36.0
P10809_1026
29.3
P10809_1045
38.7
P10809_1064
24.9
P10809_1086
37.9
P10809_1113
40.4
Memory CD8 T-cell nTPM: 40.9
Samples: 5
Max nTPM: 49.1
Min nTPM: 31.2
P10809_1012
31.2
P10809_1027
47.2
P10809_1046
41.5
P10809_1065
35.3
P10809_1111
49.1
Naive CD4 T-cell nTPM: 43.2
Samples: 6
Max nTPM: 53.5
Min nTPM: 33.6
P10809_1015
37.7
P10809_1030
53.5
P10809_1049
51.4
P10809_1068
43.2
P10809_1085
33.6
P10809_1112
39.9
Naive CD8 T-cell nTPM: 43.9
Samples: 6
Max nTPM: 57.2
Min nTPM: 36.1
P10809_1016
36.1
P10809_1031
57.2
P10809_1050
43.2
P10809_1069
49.4
P10809_1087
40.0
P10809_1110
37.6
T-reg nTPM: 32.1
Samples: 6
Max nTPM: 40.1
Min nTPM: 18.5
P10809_1018
29.2
P10809_1037
36.1
P10809_1056
30.6
P10809_1075
18.5
P10809_1094
40.1
P10809_1106
38.3
T-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
91.4
Monaco sample
nTPM
Central memory CD8 T-cell nTPM: 76.4
Samples: 4
Max nTPM: 98.8
Min nTPM: 60.7
RHH5202_R3573
60.7
RHH5230_R3602
98.8
RHH5259_R3631
76.5
RHH5288_R3660
69.6
Effector memory CD8 T-cell nTPM: 88.4
Samples: 4
Max nTPM: 124.3
Min nTPM: 66.8
RHH5203_R3574
67.7
RHH5231_R3603
124.3
RHH5260_R3632
66.8
RHH5289_R3661
94.8
MAIT T-cell nTPM: 91.4
Samples: 4
Max nTPM: 98.6
Min nTPM: 84.0
RHH5233_R3605
84.0
RHH5205_R3576
98.4
RHH5262_R3634
98.6
RHH5297_R3663
84.4
Memory CD4 T-cell TFH nTPM: 71.4
Samples: 4
Max nTPM: 90.4
Min nTPM: 57.6
RHH5300_R3666
65.9
RHH5236_R3608
57.6
RHH5265_R3637
90.4
RHH5208_R3579
71.8
Memory CD4 T-cell Th1 nTPM: 62.1
Samples: 4
Max nTPM: 78.9
Min nTPM: 26.8
RHH5210_R3581
67.7
RHH5302_R3668
74.9
RHH5238_R3610
26.8
RHH5267_R3639
78.9
Memory CD4 T-cell Th1/Th17 nTPM: 72.8
Samples: 4
Max nTPM: 91.0
Min nTPM: 44.4
RHH5303_R3669
91.0
RHH5211_R3582
84.8
RHH5239_R3611
44.4
RHH5268_R3640
71.0
Memory CD4 T-cell Th17 nTPM: 68.5
Samples: 4
Max nTPM: 96.7
Min nTPM: 53.8
RHH5304_R3670
96.7
RHH5212_R3583
53.8
RHH5240_R3612
68.0
RHH5269_R3641
55.6
Memory CD4 T-cell Th2 nTPM: 72.2
Samples: 4
Max nTPM: 87.4
Min nTPM: 50.7
RHH5305_R3671
50.7
RHH5213_R3584
87.4
RHH5241_R3613
71.9
RHH5270_R3642
78.8
Naive CD4 T-cell nTPM: 64.3
Samples: 4
Max nTPM: 75.4
Min nTPM: 53.7
RHH5306_R3672
67.0
RHH5214_R3585
61.2
RHH5242_R3614
53.7
RHH5271_R3643
75.4
Naive CD8 T-cell nTPM: 49.0
Samples: 4
Max nTPM: 61.8
Min nTPM: 34.4
RHH5201_R3572
57.0
RHH5229_R3601
34.4
RHH5258_R3630
61.8
RHH5287_R3659
42.7
Non-Vd2 gdTCR nTPM: 80.9
Samples: 4
Max nTPM: 96.4
Min nTPM: 71.2
RHH5235_R3607
82.4
RHH5264_R3636
71.2
RHH5207_R3578
96.4
RHH5299_R3665
73.6
T-reg nTPM: 58.0
Samples: 4
Max nTPM: 69.1
Min nTPM: 48.2
RHH5301_R3667
61.8
RHH5237_R3609
52.9
RHH5266_R3638
69.1
RHH5209_R3580
48.2
Terminal effector memory CD4 T-cell nTPM: 74.8
Samples: 2
Max nTPM: 77.1
Min nTPM: 72.5
RHH5243_R3615
72.5
RHH5272_R3644
77.1
Terminal effector memory CD8 T-cell nTPM: 72.3
Samples: 4
Max nTPM: 76.9
Min nTPM: 63.0
RHH5232_R3604
74.9
RHH5204_R3575
63.0
RHH5261_R3633
76.9
RHH5296_R3662
74.2
Vd2 gdTCR nTPM: 87.0
Samples: 4
Max nTPM: 134.1
Min nTPM: 61.8
RHH5234_R3606
134.1
RHH5206_R3577
61.8
RHH5263_R3635
66.6
RHH5298_R3664
85.6
T-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
The Human Protein Atlas project is funded
