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TISSUE PRIMARY DATA RETINA Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
NASOPHARYNX ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Tissue proteome
Eye
Retina
Tissue methods
RETINA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:292.7 nTPM
GTEx:292.7 nTPM
FANTOM5:190.3 Scaled Tags Per Million
EYE - SINGLE CELL RNA EXPRESSION
Explore single cell type data

RETINA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

292.7
GTEx sample id Sample description nTPM
Retina
Average nTPM: 292.7
Samples: 105

Max nTPM: 453.1
Min nTPM: 193.9
Std nTPM: 60.5
Median nTPM:
307_1 66 years, female 453.1
491_1 89 years, female 439.1
322_1 76 years, male 424.9
145_1 84 years, male 408.2
490_1 67 years, female 406.7
501_1 88 years, male 400.6
413_1 59 years, female 398.2
139_1 64 years, female 397.6
375_1 74 years, female 389.4
495_1 57 years, female 388.2
35_1 74 years, female 379.2
316_1 62 years, male 376.6
379_1 60 years, male 371.3
17_1 71 years, male 365.1
6_1 73 years, female 364.3
43_1 64 years, female 361.4
120_1 70 years, female 360.4
2_1 77 years, female 359.8
41_1 94 years, female 357.6
42_1 85 years, male 352.5
4_1 88 years, female 351.8
117_1 61 years, male 344.8
119_1 70 years, female 344.0
386_1 76 years, male 342.3
308_1 70 years, female 341.9
173_1 67 years, male 340.4
142_1 61 years, female 339.4
313_1 79 years, female 336.2
237_1 82 years, male 335.9
89_1 63 years, male 333.2
218_1 71 years, female 330.7
315_1 62 years, female 327.6
447_1 81 years, male 326.2
347_1 72 years, male 324.5
518_1 75 years, female 322.5
384_1 83 years, male 316.4
18_1 88 years, male 315.1
81_1 67 years, male 314.8
396_1 62 years, male 313.1
288_1 66 years, female 311.1
311_1 78 years, male 305.2
348_1 84 years, male 298.7
377_1 82 years, female 298.3
324_1 76 years, male 295.5
452_1 88 years, female 293.8
162_1 79 years, female 293.1
149_1 88 years, male 289.6
466_1 57 years, female 288.3
265_1 87 years, male 288.0
414_1 84 years, female 285.3
314_1 67 years, male 285.1
109_1 81 years, female 282.5
153_1 70 years, female 282.3
506_1 65 years, male 280.5
137_1 83 years, male 272.7
321_1 62 years, female 272.3
254_1 77 years, female 272.2
126_1 63 years, male 270.9
415_1 77 years, female 270.2
229_1 69 years, female 267.1
115_1 83 years, male 265.7
499_1 55 years, female 263.7
217_1 76 years, male 262.3
246_1 77 years, male 260.8
404_1 82 years, female 258.5
264_1 73 years, female 258.1
350_1 84 years, female 257.9
32_1 67 years, male 257.2
468_1 89 years, male 257.2
425_1 59 years, female 256.2
266_1 85 years, male 255.7
295_1 61 years, female 254.2
353_1 82 years, female 253.9
317_1 60 years, male 253.1
291_1 76 years, male 251.7
319_1 81 years, male 250.4
243_1 75 years, male 249.6
526_1 61 years, male 249.0
318_1 68 years, male 245.8
9_1 66 years, female 243.8
320_1 89 years, female 241.2
480_1 63 years, male 240.8
376_1 75 years, female 239.4
99_1 64 years, male 238.7
335_1 73 years, female 237.0
286_1 68 years, female 234.2
405_1 91 years, male 233.9
354_1 81 years, female 233.3
189_1 76 years, male 232.5
351_1 91 years, male 228.2
406_1 79 years, male 226.9
517_1 88 years, male 226.9
503_1 68 years, male 224.5
177_1 74 years, male 220.5
389_1 86 years, female 219.8
355_1 70 years, female 218.2
293_1 68 years, female 217.9
251_1 78 years, male 215.8
352_1 62 years, male 213.6
292_1 71 years, male 213.2
172_1 72 years, female 210.2
349_1 83 years, male 206.5
163_1 78 years, male 206.3
394_1 75 years, female 202.7
356_1 87 years, female 193.9
Show allShow less

RETINA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

190.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Retina
Scaled Tags Per Million: 190.3
FF:10030-101E3 24-65 years, mixed 190.3

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