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  • IGHG1
TISSUE PRIMARY DATA SMALL INTESTINE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
NASOPHARYNX ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Small intestine
Tissue proteome
Intestine
Tissue methods
SMALL INTESTINE - Expression summary
Protein expression
Small intestinei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glandular cells: Medium
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:981.3 nTPM
HPA:168.0 nTPM
GTEx:981.3 nTPM
FANTOM5:3.9 Scaled Tags Per Million
SMALL INTESTINE - SINGLE CELL RNA EXPRESSION
Explore single cell type data

SMALL INTESTINE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells. Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Ascending and descending describe two types of gradient, based on difference in staining intensity between enterocytes in crypts and apical enterocytes.

Ascending - the staining intensity is stronger in apical enterocytes (towards the lumen) compared to enterocytes in the crypts (gland based)

Descending - the staining is weaker in apical enterocytes compared to enterocytes in crypts

Antibody HPA001245Antibody CAB008642
Glandular cells MediumMedium



SMALL INTESTINE - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.

Average nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

168.0
overview
Male, age 65
Small intestine sample 232
nTPM: 121.4
Cell types%
Glandular cells:
55

Smooth muscle cells:
5

Other cell types:
40

overview
Male, age 39
Small intestine sample 233
nTPM: 64.4
Cell types%
Glandular cells:
40

Smooth muscle cells:
5

Other cell types:
55

overview
Male, age 68
Small intestine sample 234
nTPM: 376.3
Cell types%
Glandular cells:
30

Smooth muscle cells:
15

Other cell types:
55

N/A
Male, age 85
Small intestine sample 235
nTPM: 110

SMALL INTESTINE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

981.3
GTEx sample id Sample description nTPM
Small Intestine - Terminal Ileum
Average nTPM: 981.3
Samples: 207

Max nTPM: 13229.3
Min nTPM: 2.0
Std nTPM: 1629.4
Median nTPM: 444.7
GTEX-1OJC3-1626-SM-E9U65 20-29 years, male 13229.3
GTEX-1HSGN-2126-SM-GA8ZB 40-49 years, female 8710.5
GTEX-1RAZA-1826-SM-DTXA2 20-29 years, male 8130.2
GTEX-16NGA-1126-SM-7KFSY 40-49 years, female 7156.5
GTEX-Z9EW-0926-SM-5CVMM 40-49 years, male 6192.7
GTEX-18QFQ-1626-SM-72D7H 30-39 years, male 5969.8
GTEX-1IKOE-1926-SM-ARU7V 30-39 years, female 5005.3
GTEX-1EMGI-2826-SM-7IGMR 60-69 years, male 4534.1
GTEX-1AX8Z-2526-SM-731E3 60-69 years, male 4232.0
GTEX-ZVP2-1726-SM-5GU5P 50-59 years, male 4075.9
GTEX-14BMU-1426-SM-5TDE5 20-29 years, female 3897.9
GTEX-X15G-1426-SM-4PQZK 50-59 years, female 3836.7
GTEX-1GL5R-2026-SM-7MKHP 50-59 years, male 3773.4
GTEX-1HCUA-1726-SM-GA8Z2 50-59 years, female 3755.2
GTEX-1C475-1426-SM-793CH 40-49 years, female 3751.0
GTEX-11P7K-1626-SM-5GU63 30-39 years, male 3143.7
GTEX-WRHK-1026-SM-4MVOD 20-29 years, female 3023.2
GTEX-1LBAC-1526-SM-CXZKU 20-29 years, male 2966.3
GTEX-WHPG-1826-SM-GNTAH 50-59 years, male 2957.1
GTEX-14PK6-1626-SM-6871I 70-79 years, female 2928.9
GTEX-1H11D-2526-SM-9JGGU 40-49 years, male 2693.1
GTEX-145ME-0926-SM-5O9AR 40-49 years, female 2659.4
GTEX-1PDJ9-1826-SM-E9U66 20-29 years, male 2352.9
GTEX-11XUK-1426-SM-5EQMG 40-49 years, female 2102.9
GTEX-16A39-1426-SM-6LLI6 30-39 years, female 2015.5
GTEX-U8XE-2226-SM-HAUZQ 30-39 years, male 1746.0
GTEX-11P82-0826-SM-5P9GU 20-29 years, male 1678.5
GTEX-17MFQ-1026-SM-7KFSZ 20-29 years, male 1661.2
GTEX-1MGNQ-2326-SM-EV7BG 40-49 years, male 1598.9
GTEX-11NSD-1726-SM-5N9C3 20-29 years, male 1581.5
GTEX-ZLFU-1526-SM-4WWBT 40-49 years, male 1560.9
GTEX-183FY-1626-SM-793D8 20-29 years, male 1429.6
GTEX-1PIEJ-1526-SM-E6CP8 20-29 years, female 1414.0
GTEX-13FH7-1226-SM-5IJFK 50-59 years, female 1407.8
GTEX-1R7EV-1226-SM-DTX82 40-49 years, male 1389.7
GTEX-WH7G-1626-SM-4LVMY 40-49 years, male 1367.5
GTEX-1HSMQ-2226-SM-C1YRD 50-59 years, male 1341.1
GTEX-ZP4G-1626-SM-57WGD 20-29 years, female 1333.2
GTEX-VUSG-1726-SM-4KKZL 50-59 years, male 1321.8
GTEX-1KXAM-2026-SM-DHXKI 60-69 years, male 1298.4
GTEX-13111-1426-SM-5DUW3 50-59 years, male 1274.4
GTEX-WHSB-1026-SM-4M1XN 50-59 years, male 1255.7
GTEX-1HKZK-2226-SM-GA91V 40-49 years, male 1241.0
GTEX-1497J-1926-SM-5TDCC 60-69 years, male 1195.7
GTEX-18A66-2526-SM-7KFTZ 60-69 years, male 1189.2
GTEX-11DXZ-1326-SM-5H11X 50-59 years, male 1180.5
GTEX-1S5ZA-1326-SM-EV7BB 20-29 years, male 1125.1
GTEX-ZEX8-1826-SM-57WBH 50-59 years, male 1092.6
GTEX-1GMR3-2726-SM-7MKFB 40-49 years, male 1084.5
GTEX-13CF3-1226-SM-5LZXN 60-69 years, female 1065.3
GTEX-1399U-2126-SM-5IFEZ 50-59 years, female 1056.1
GTEX-131XG-1726-SM-5LZUR 50-59 years, female 1049.6
GTEX-1K9T9-2726-SM-D4P3E 50-59 years, female 1018.3
GTEX-14E6E-1626-SM-5RQI7 30-39 years, male 1005.5
GTEX-1QP28-1726-SM-E6CRK 50-59 years, female 992.8
GTEX-Y114-1426-SM-4TT6W 50-59 years, female 990.8
GTEX-ZTPG-2626-SM-57WFX 20-29 years, female 979.2
GTEX-XGQ4-1326-SM-4GIDU 50-59 years, male 974.8
GTEX-1F75I-2526-SM-9WPOZ 40-49 years, male 935.0
GTEX-15DZA-0826-SM-6AJBF 30-39 years, female 920.2
GTEX-X5EB-1626-SM-4E3IV 40-49 years, male 907.7
GTEX-14XAO-1926-SM-6ETZO 60-69 years, female 902.6
GTEX-145LT-1026-SM-5LU9O 40-49 years, male 891.3
GTEX-W5X1-1926-SM-GOQYX 40-49 years, female 891.2
GTEX-ZVT2-2126-SM-5NQ93 50-59 years, female 845.9
GTEX-1HBPN-1926-SM-GA91H 50-59 years, male 845.2
GTEX-1GMR2-1026-SM-7MKHJ 50-59 years, male 843.3
GTEX-1LGOU-1426-SM-D3L8N 20-29 years, female 826.2
GTEX-1JN76-1126-SM-C1YRL 20-29 years, female 786.4
GTEX-UPK5-2026-SM-4JBIM 40-49 years, male 786.2
GTEX-WFJO-0926-SM-4LVM2 30-39 years, male 762.4
GTEX-ZC5H-2326-SM-4WAYT 40-49 years, female 740.1
GTEX-1QPFJ-2626-SM-DPRZU 30-39 years, female 721.5
GTEX-VJYA-0926-SM-4KL1N 60-69 years, male 719.5
GTEX-1J8QM-1026-SM-C1YQA 60-69 years, female 703.0
GTEX-1NSGN-2126-SM-DPRYN 50-59 years, male 700.0
GTEX-17HHE-1726-SM-79OKT 50-59 years, male 695.2
GTEX-14PKU-1626-SM-6871C 40-49 years, female 679.4
GTEX-ZLWG-1626-SM-DNZZ1 50-59 years, female 674.9
GTEX-1R9K5-2026-SM-E6CPS 50-59 years, male 673.8
GTEX-XAJ8-0526-SM-47JYK 40-49 years, male 661.5
GTEX-1MCYP-1626-SM-HLJQ5 20-29 years, female 657.1
GTEX-WEY5-1526-SM-4LMJF 40-49 years, female 652.2
GTEX-Y5LM-1626-SM-4VDTB 40-49 years, female 649.2
GTEX-ZF29-1626-SM-4WKFJ 60-69 years, female 634.8
GTEX-1RAZR-1826-SM-E6CRE 40-49 years, male 634.4
GTEX-1RAZQ-2226-SM-DPRZR 30-39 years, male 611.4
GTEX-11TUW-1926-SM-5BC58 60-69 years, male 609.7
GTEX-11VI4-1626-SM-5EQKO 40-49 years, female 592.8
GTEX-11EQ9-1326-SM-5985X 30-39 years, male 590.1
GTEX-148VJ-2226-SM-5NQ9M 70-79 years, male 578.9
GTEX-13RTK-0826-SM-5Q5C6 20-29 years, male 565.9
GTEX-1R9K4-2326-SM-E6CRB 60-69 years, male 550.3
GTEX-1M5QR-2226-SM-HLJRV 40-49 years, male 546.7
GTEX-1PFEY-1326-SM-HK791 30-39 years, male 540.9
GTEX-12BJ1-1926-SM-5HL9Z 60-69 years, male 520.3
GTEX-1NHNU-2526-SM-HK79M 50-59 years, male 516.0
GTEX-11DXX-1626-SM-5H11H 60-69 years, female 508.6
GTEX-13O61-1326-SM-5KM31 60-69 years, male 504.8
GTEX-1CAMR-0826-SM-7MKFK 20-29 years, male 492.8
GTEX-ZT9X-1026-SM-HLJS2 40-49 years, male 492.0
GTEX-ZTX8-0526-SM-59HLD 20-29 years, male 467.5
GTEX-ZG7Y-1926-SM-DNZZ5 50-59 years, male 451.3
GTEX-ZZ64-0526-SM-5GZXM 20-29 years, male 444.7
GTEX-14PJ6-1726-SM-6AJBN 60-69 years, female 441.8
GTEX-1H1DE-1426-SM-9JGHV 20-29 years, male 435.5
GTEX-144GM-1026-SM-5O9AZ 20-29 years, male 434.6
GTEX-1RQED-2826-SM-HLJQK 60-69 years, male 396.6
GTEX-139T6-1026-SM-5IJGC 50-59 years, male 351.9
GTEX-13PL7-2626-SM-5IFH4 60-69 years, female 350.3
GTEX-1399S-2026-SM-5KM4B 30-39 years, female 339.4
GTEX-YB5E-1526-SM-5IFIE 40-49 years, male 336.6
GTEX-ZYFG-2026-SM-5E43Y 60-69 years, female 329.8
GTEX-1R7EU-1326-SM-E6CQ6 60-69 years, male 329.2
GTEX-YF7O-1826-SM-5IFIU 50-59 years, male 325.0
GTEX-ZV7C-1426-SM-GNTB8 50-59 years, male 314.8
GTEX-ZPIC-2326-SM-57WDW 40-49 years, female 313.5
GTEX-ZVZP-1826-SM-5GZXB 50-59 years, male 311.0
GTEX-14PJN-0826-SM-686ZL 30-39 years, male 299.4
GTEX-139YR-2226-SM-5IFFW 50-59 years, male 297.4
GTEX-WFG8-1626-SM-4LVMB 20-29 years, male 289.7
GTEX-1QW4Y-1226-SM-EWRMY 30-39 years, male 281.9
GTEX-11I78-1126-SM-5A5K5 50-59 years, female 271.4
GTEX-13113-1226-SM-5EGHT 60-69 years, female 269.1
GTEX-1CAMS-2426-SM-7DHMV 40-49 years, female 265.6
GTEX-ZLV1-1126-SM-4WWBW 60-69 years, female 262.2
GTEX-ZQG8-2526-SM-57WEQ 60-69 years, female 261.1
GTEX-X3Y1-1526-SM-H6Q6X 40-49 years, male 258.8
GTEX-16AAH-1426-SM-7KFTR 50-59 years, male 258.2
GTEX-1B8KZ-1126-SM-7IGLX 50-59 years, male 254.3
GTEX-1L5NE-1826-SM-EV79T 50-59 years, male 249.4
GTEX-15G1A-1726-SM-6LPI4 30-39 years, male 245.5
GTEX-XBED-1426-SM-4AT4G 60-69 years, male 245.0
GTEX-XUZC-1426-SM-4BRV3 30-39 years, female 244.3
GTEX-16MTA-1526-SM-6LPJB 50-59 years, male 239.3
GTEX-1JJE9-2226-SM-CXZJM 70-79 years, male 235.9
GTEX-ZPCL-1726-SM-57WEO 60-69 years, female 235.5
GTEX-WY7C-1826-SM-4ONCE 50-59 years, male 233.5
GTEX-1JK1U-1226-SM-CNNPN 60-69 years, male 231.9
GTEX-13FTW-2026-SM-5IJE2 40-49 years, male 227.8
GTEX-14PKV-2026-SM-6AJ9A 20-29 years, female 226.4
GTEX-YFCO-1326-SM-664NV 40-49 years, male 219.0
GTEX-ZA64-1226-SM-5HL7B 20-29 years, male 215.6
GTEX-1R9PM-1626-SM-DPRY9 20-29 years, male 213.9
GTEX-1MUQO-2426-SM-EAZ5A 60-69 years, male 212.9
GTEX-13QBU-1926-SM-5IJEW 40-49 years, female 207.2
GTEX-13X6H-1826-SM-5O9D1 50-59 years, female 205.9
GTEX-YEC4-1726-SM-4W21E 40-49 years, male 200.0
GTEX-13O21-1026-SM-5IJDU 50-59 years, male 195.5
GTEX-117YX-0326-SM-5GICL 50-59 years, male 191.5
GTEX-13D11-0726-SM-5LZZB 50-59 years, female 189.8
GTEX-Y3IK-1726-SM-4YCCR 50-59 years, female 187.5
GTEX-YJ8A-2126-SM-GQ1C7 20-29 years, male 185.7
GTEX-1B8KE-1726-SM-7IGMN 50-59 years, male 177.8
GTEX-1C64O-2526-SM-79ONO 60-69 years, male 175.6
GTEX-1S831-1526-SM-HLJQS 20-29 years, male 174.7
GTEX-131XF-1326-SM-5GCMQ 60-69 years, male 167.8
GTEX-ZF2S-1726-SM-57WFT 50-59 years, female 166.9
GTEX-ZTSS-0926-SM-59865 40-49 years, male 163.9
GTEX-1MA7W-0726-SM-HLJQU 20-29 years, female 162.0
GTEX-X4LF-1326-SM-HLJSD 50-59 years, male 143.0
GTEX-Y9LG-1626-SM-5IFHM 30-39 years, male 135.2
GTEX-1QP2A-2426-SM-EXOJA 50-59 years, male 132.5
GTEX-14PJ3-1326-SM-664O7 50-59 years, male 127.5
GTEX-14PN3-2026-SM-68729 60-69 years, female 124.7
GTEX-1122O-1326-SM-5H11F 60-69 years, female 118.8
GTEX-ZDTT-1726-SM-5HL69 60-69 years, male 117.0
GTEX-ZPU1-1826-SM-GNTB3 40-49 years, male 112.1
GTEX-1OKEX-1126-SM-DTXEB 60-69 years, male 107.4
GTEX-133LE-1426-SM-5IFH1 20-29 years, female 101.8
GTEX-1J8Q3-2526-SM-CNNQ4 60-69 years, male 98.0
GTEX-1AMFI-1926-SM-731F2 50-59 years, female 90.9
GTEX-WQUQ-2426-SM-4MVNW 60-69 years, male 90.6
GTEX-14DAR-1426-SM-5RQIR 50-59 years, male 82.2
GTEX-1JMQK-2426-SM-CXZJU 60-69 years, male 71.0
GTEX-ZXES-1526-SM-5NQ95 30-39 years, female 62.5
GTEX-1399R-2026-SM-5K7WN 30-39 years, male 56.0
GTEX-Y5V5-1826-SM-4VDS5 60-69 years, female 55.1
GTEX-1192X-2526-SM-59868 50-59 years, male 54.6
GTEX-11LCK-1926-SM-5A5KE 30-39 years, male 54.5
GTEX-12WSK-1526-SM-5CVNO 40-49 years, female 54.4
GTEX-Y3I4-1326-SM-4TT8Z 50-59 years, male 54.0
GTEX-111YS-1426-SM-5GID8 60-69 years, male 52.2
GTEX-XMK1-1826-SM-4B66F 40-49 years, male 48.9
GTEX-XXEK-1026-SM-4BRUW 50-59 years, male 46.5
GTEX-1BAJH-2526-SM-7IGOT 70-79 years, male 45.8
GTEX-WFG7-1726-SM-4LVME 20-29 years, male 44.1
GTEX-YB5K-1126-SM-H6Q6O 40-49 years, female 42.9
GTEX-ZQUD-0926-SM-57WE3 30-39 years, male 39.3
GTEX-1LH75-1926-SM-DIPGD 50-59 years, female 37.3
GTEX-17KNJ-1626-SM-718AL 50-59 years, male 33.9
GTEX-15EU6-1826-SM-7PC1W 50-59 years, male 33.1
GTEX-14C39-1826-SM-5ZZW4 40-49 years, male 32.2
GTEX-XPT6-1026-SM-GOQYN 20-29 years, male 30.4
GTEX-111CU-1326-SM-5NQ8L 50-59 years, male 25.8
GTEX-178AV-1226-SM-GOR11 40-49 years, male 25.2
GTEX-Y111-2226-SM-4SOJB 50-59 years, male 25.1
GTEX-1I1GT-1826-SM-ARZLW 60-69 years, female 19.6
GTEX-1R9JW-1926-SM-EVR4J 30-39 years, female 15.7
GTEX-13NYB-1826-SM-5J1N3 40-49 years, male 15.6
GTEX-XPVG-1726-SM-4B65W 50-59 years, male 15.3
GTEX-WYJK-1526-SM-4ONCW 50-59 years, male 13.9
GTEX-1S82Z-1826-SM-E9TIK 30-39 years, female 9.3
GTEX-1QCLZ-2126-SM-EWRNC 60-69 years, female 8.0
GTEX-ZAB5-1526-SM-5HL9P 50-59 years, male 3.9
GTEX-WFON-1526-SM-4LVMP 40-49 years, male 2.7
GTEX-13OVI-1926-SM-5IJCG 60-69 years, female 2.0
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SMALL INTESTINE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

3.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Small intestine
Scaled Tags Per Million: 3.9
FF:10024-101D6 15,40,85 years, mixed 3.9

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