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  • IGHA2
TISSUE PRIMARY DATA SMALL INTESTINE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
NASOPHARYNX ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Small intestine
Tissue proteome
Intestine
Tissue methods
SMALL INTESTINE - Expression summary
Protein expression
Small intestinei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glandular cells: Low
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:2124.2 nTPM
HPA:544.9 nTPM
GTEx:2124.2 nTPM
FANTOM5:81.3 Scaled Tags Per Million
SMALL INTESTINE - SINGLE CELL RNA EXPRESSION
Explore single cell type data

SMALL INTESTINE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells. Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Ascending and descending describe two types of gradient, based on difference in staining intensity between enterocytes in crypts and apical enterocytes.

Ascending - the staining intensity is stronger in apical enterocytes (towards the lumen) compared to enterocytes in the crypts (gland based)

Descending - the staining is weaker in apical enterocytes compared to enterocytes in crypts

Antibody HPA001217Antibody HPA006013
Glandular cells LowMedium


SMALL INTESTINE - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.

Average nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

544.9
overview
Male, age 65
Small intestine sample 232
nTPM: 24.5
Cell types%
Glandular cells:
55

Smooth muscle cells:
5

Other cell types:
40

overview
Male, age 39
Small intestine sample 233
nTPM: 9.1
Cell types%
Glandular cells:
40

Smooth muscle cells:
5

Other cell types:
55

overview
Male, age 68
Small intestine sample 234
nTPM: 2141.7
Cell types%
Glandular cells:
30

Smooth muscle cells:
15

Other cell types:
55

N/A
Male, age 85
Small intestine sample 235
nTPM: 4.4

SMALL INTESTINE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

2124.2
GTEx sample id Sample description nTPM
Small Intestine - Terminal Ileum
Average nTPM: 2124.2
Samples: 207

Max nTPM: 78899.7
Min nTPM: 1.2
Std nTPM: 5676.9
Median nTPM: 1186.8
GTEX-VJYA-0926-SM-4KL1N 60-69 years, male 78899.7
GTEX-ZQG8-2526-SM-57WEQ 60-69 years, female 13539.1
GTEX-1K9T9-2726-SM-D4P3E 50-59 years, female 10030.3
GTEX-16NGA-1126-SM-7KFSY 40-49 years, female 8041.9
GTEX-13CF3-1226-SM-5LZXN 60-69 years, female 8000.7
GTEX-1B8KZ-1126-SM-7IGLX 50-59 years, male 7523.9
GTEX-1R9K5-2026-SM-E6CPS 50-59 years, male 6959.0
GTEX-11DXZ-1326-SM-5H11X 50-59 years, male 6001.1
GTEX-13113-1226-SM-5EGHT 60-69 years, female 5739.2
GTEX-1HSMQ-2226-SM-C1YRD 50-59 years, male 5704.3
GTEX-139YR-2226-SM-5IFFW 50-59 years, male 5590.2
GTEX-1R7EV-1226-SM-DTX82 40-49 years, male 5568.4
GTEX-YB5E-1526-SM-5IFIE 40-49 years, male 5516.0
GTEX-ZVP2-1726-SM-5GU5P 50-59 years, male 5464.4
GTEX-ZYFG-2026-SM-5E43Y 60-69 years, female 5425.3
GTEX-11P7K-1626-SM-5GU63 30-39 years, male 4778.5
GTEX-X15G-1426-SM-4PQZK 50-59 years, female 4773.2
GTEX-ZV7C-1426-SM-GNTB8 50-59 years, male 4408.0
GTEX-1HBPN-1926-SM-GA91H 50-59 years, male 4127.5
GTEX-18A66-2526-SM-7KFTZ 60-69 years, male 4040.1
GTEX-X4LF-1326-SM-HLJSD 50-59 years, male 4000.3
GTEX-XGQ4-1326-SM-4GIDU 50-59 years, male 3975.8
GTEX-WHSB-1026-SM-4M1XN 50-59 years, male 3933.7
GTEX-145ME-0926-SM-5O9AR 40-49 years, female 3882.1
GTEX-11EQ9-1326-SM-5985X 30-39 years, male 3742.6
GTEX-XBED-1426-SM-4AT4G 60-69 years, male 3558.1
GTEX-1497J-1926-SM-5TDCC 60-69 years, male 3553.3
GTEX-W5X1-1926-SM-GOQYX 40-49 years, female 3472.5
GTEX-XAJ8-0526-SM-47JYK 40-49 years, male 3453.2
GTEX-1JK1U-1226-SM-CNNPN 60-69 years, male 3415.3
GTEX-1399R-2026-SM-5K7WN 30-39 years, male 3404.4
GTEX-1HSGN-2126-SM-GA8ZB 40-49 years, female 3346.8
GTEX-1NSGN-2126-SM-DPRYN 50-59 years, male 3309.3
GTEX-1R7EU-1326-SM-E6CQ6 60-69 years, male 3164.7
GTEX-1NHNU-2526-SM-HK79M 50-59 years, male 3056.6
GTEX-13RTK-0826-SM-5Q5C6 20-29 years, male 3040.9
GTEX-16MTA-1526-SM-6LPJB 50-59 years, male 2978.9
GTEX-1RAZA-1826-SM-DTXA2 20-29 years, male 2932.8
GTEX-ZLV1-1126-SM-4WWBW 60-69 years, female 2886.2
GTEX-13FTW-2026-SM-5IJE2 40-49 years, male 2835.9
GTEX-18QFQ-1626-SM-72D7H 30-39 years, male 2767.8
GTEX-1L5NE-1826-SM-EV79T 50-59 years, male 2734.0
GTEX-WY7C-1826-SM-4ONCE 50-59 years, male 2709.8
GTEX-X5EB-1626-SM-4E3IV 40-49 years, male 2697.5
GTEX-131XF-1326-SM-5GCMQ 60-69 years, male 2642.8
GTEX-1GMR2-1026-SM-7MKHJ 50-59 years, male 2640.7
GTEX-1HKZK-2226-SM-GA91V 40-49 years, male 2535.4
GTEX-13PL7-2626-SM-5IFH4 60-69 years, female 2511.7
GTEX-WHPG-1826-SM-GNTAH 50-59 years, male 2510.3
GTEX-WQUQ-2426-SM-4MVNW 60-69 years, male 2453.9
GTEX-1OJC3-1626-SM-E9U65 20-29 years, male 2443.0
GTEX-14PJ6-1726-SM-6AJBN 60-69 years, female 2423.5
GTEX-13D11-0726-SM-5LZZB 50-59 years, female 2341.8
GTEX-XXEK-1026-SM-4BRUW 50-59 years, male 2293.8
GTEX-14PJN-0826-SM-686ZL 30-39 years, male 2277.3
GTEX-1KXAM-2026-SM-DHXKI 60-69 years, male 2270.6
GTEX-WFG8-1626-SM-4LVMB 20-29 years, male 2263.5
GTEX-ZEX8-1826-SM-57WBH 50-59 years, male 2179.9
GTEX-14E6E-1626-SM-5RQI7 30-39 years, male 2146.4
GTEX-14PN3-2026-SM-68729 60-69 years, female 2123.0
GTEX-1GL5R-2026-SM-7MKHP 50-59 years, male 2095.1
GTEX-15G1A-1726-SM-6LPI4 30-39 years, male 2018.9
GTEX-ZLWG-1626-SM-DNZZ1 50-59 years, female 2018.2
GTEX-ZPIC-2326-SM-57WDW 40-49 years, female 2015.9
GTEX-WH7G-1626-SM-4LVMY 40-49 years, male 1981.7
GTEX-1C475-1426-SM-793CH 40-49 years, female 1964.9
GTEX-ZLFU-1526-SM-4WWBT 40-49 years, male 1939.0
GTEX-1J8QM-1026-SM-C1YQA 60-69 years, female 1920.4
GTEX-ZTX8-0526-SM-59HLD 20-29 years, male 1911.9
GTEX-1HCUA-1726-SM-GA8Z2 50-59 years, female 1865.0
GTEX-Z9EW-0926-SM-5CVMM 40-49 years, male 1858.0
GTEX-Y3IK-1726-SM-4YCCR 50-59 years, female 1831.0
GTEX-1H11D-2526-SM-9JGGU 40-49 years, male 1822.9
GTEX-17HHE-1726-SM-79OKT 50-59 years, male 1774.8
GTEX-13111-1426-SM-5DUW3 50-59 years, male 1740.0
GTEX-14PK6-1626-SM-6871I 70-79 years, female 1724.6
GTEX-13X6H-1826-SM-5O9D1 50-59 years, female 1700.1
GTEX-WFJO-0926-SM-4LVM2 30-39 years, male 1694.7
GTEX-13O21-1026-SM-5IJDU 50-59 years, male 1687.4
GTEX-16AAH-1426-SM-7KFTR 50-59 years, male 1622.1
GTEX-14BMU-1426-SM-5TDE5 20-29 years, female 1518.1
GTEX-Y114-1426-SM-4TT6W 50-59 years, female 1480.6
GTEX-148VJ-2226-SM-5NQ9M 70-79 years, male 1468.1
GTEX-1LBAC-1526-SM-CXZKU 20-29 years, male 1419.7
GTEX-ZG7Y-1926-SM-DNZZ5 50-59 years, male 1397.6
GTEX-ZZ64-0526-SM-5GZXM 20-29 years, male 1391.5
GTEX-1IKOE-1926-SM-ARU7V 30-39 years, female 1384.9
GTEX-ZT9X-1026-SM-HLJS2 40-49 years, male 1379.8
GTEX-1PDJ9-1826-SM-E9U66 20-29 years, male 1374.5
GTEX-Y5LM-1626-SM-4VDTB 40-49 years, female 1358.8
GTEX-ZDTT-1726-SM-5HL69 60-69 years, male 1353.1
GTEX-XUZC-1426-SM-4BRV3 30-39 years, female 1348.7
GTEX-11NSD-1726-SM-5N9C3 20-29 years, male 1320.0
GTEX-15DZA-0826-SM-6AJBF 30-39 years, female 1318.4
GTEX-YJ8A-2126-SM-GQ1C7 20-29 years, male 1306.3
GTEX-111YS-1426-SM-5GID8 60-69 years, male 1298.6
GTEX-YEC4-1726-SM-4W21E 40-49 years, male 1287.4
GTEX-ZA64-1226-SM-5HL7B 20-29 years, male 1248.6
GTEX-1QPFJ-2626-SM-DPRZU 30-39 years, female 1232.4
GTEX-Y9LG-1626-SM-5IFHM 30-39 years, male 1225.8
GTEX-1399U-2126-SM-5IFEZ 50-59 years, female 1223.0
GTEX-1QP2A-2426-SM-EXOJA 50-59 years, male 1223.0
GTEX-144GM-1026-SM-5O9AZ 20-29 years, male 1194.9
GTEX-VUSG-1726-SM-4KKZL 50-59 years, male 1186.8
GTEX-1B8KE-1726-SM-7IGMN 50-59 years, male 1183.2
GTEX-YFCO-1326-SM-664NV 40-49 years, male 1182.4
GTEX-1122O-1326-SM-5H11F 60-69 years, female 1167.8
GTEX-133LE-1426-SM-5IFH1 20-29 years, female 1167.5
GTEX-13FH7-1226-SM-5IJFK 50-59 years, female 1162.9
GTEX-11VI4-1626-SM-5EQKO 40-49 years, female 1154.2
GTEX-14DAR-1426-SM-5RQIR 50-59 years, male 1132.4
GTEX-WRHK-1026-SM-4MVOD 20-29 years, female 1114.3
GTEX-1MGNQ-2326-SM-EV7BG 40-49 years, male 1112.8
GTEX-YF7O-1826-SM-5IFIU 50-59 years, male 1099.8
GTEX-11XUK-1426-SM-5EQMG 40-49 years, female 1082.6
GTEX-14XAO-1926-SM-6ETZO 60-69 years, female 1079.0
GTEX-1C64O-2526-SM-79ONO 60-69 years, male 1079.0
GTEX-ZTSS-0926-SM-59865 40-49 years, male 1076.1
GTEX-11P82-0826-SM-5P9GU 20-29 years, male 1059.3
GTEX-1S831-1526-SM-HLJQS 20-29 years, male 1042.7
GTEX-1QP28-1726-SM-E6CRK 50-59 years, female 1040.2
GTEX-ZXES-1526-SM-5NQ95 30-39 years, female 1032.7
GTEX-16A39-1426-SM-6LLI6 30-39 years, female 1011.6
GTEX-1CAMR-0826-SM-7MKFK 20-29 years, male 952.6
GTEX-ZVT2-2126-SM-5NQ93 50-59 years, female 946.1
GTEX-14PKU-1626-SM-6871C 40-49 years, female 936.6
GTEX-WFG7-1726-SM-4LVME 20-29 years, male 927.7
GTEX-14PJ3-1326-SM-664O7 50-59 years, male 916.6
GTEX-11DXX-1626-SM-5H11H 60-69 years, female 916.0
GTEX-1CAMS-2426-SM-7DHMV 40-49 years, female 903.6
GTEX-1PFEY-1326-SM-HK791 30-39 years, male 892.7
GTEX-14PKV-2026-SM-6AJ9A 20-29 years, female 887.5
GTEX-13O61-1326-SM-5KM31 60-69 years, male 870.8
GTEX-ZP4G-1626-SM-57WGD 20-29 years, female 754.3
GTEX-1AX8Z-2526-SM-731E3 60-69 years, male 718.7
GTEX-U8XE-2226-SM-HAUZQ 30-39 years, male 708.1
GTEX-ZTPG-2626-SM-57WFX 20-29 years, female 704.7
GTEX-145LT-1026-SM-5LU9O 40-49 years, male 696.5
GTEX-1GMR3-2726-SM-7MKFB 40-49 years, male 683.6
GTEX-1QW4Y-1226-SM-EWRMY 30-39 years, male 673.5
GTEX-1J8Q3-2526-SM-CNNQ4 60-69 years, male 672.0
GTEX-1RAZQ-2226-SM-DPRZR 30-39 years, male 659.1
GTEX-ZF29-1626-SM-4WKFJ 60-69 years, female 641.1
GTEX-X3Y1-1526-SM-H6Q6X 40-49 years, male 637.5
GTEX-11TUW-1926-SM-5BC58 60-69 years, male 636.4
GTEX-1RAZR-1826-SM-E6CRE 40-49 years, male 612.0
GTEX-ZVZP-1826-SM-5GZXB 50-59 years, male 602.0
GTEX-1MA7W-0726-SM-HLJQU 20-29 years, female 593.9
GTEX-1H1DE-1426-SM-9JGHV 20-29 years, male 590.0
GTEX-1F75I-2526-SM-9WPOZ 40-49 years, male 587.1
GTEX-ZC5H-2326-SM-4WAYT 40-49 years, female 570.9
GTEX-ZPCL-1726-SM-57WEO 60-69 years, female 565.9
GTEX-1PIEJ-1526-SM-E6CP8 20-29 years, female 563.9
GTEX-11I78-1126-SM-5A5K5 50-59 years, female 563.2
GTEX-17MFQ-1026-SM-7KFSZ 20-29 years, male 542.8
GTEX-1399S-2026-SM-5KM4B 30-39 years, female 535.7
GTEX-1JN76-1126-SM-C1YRL 20-29 years, female 530.4
GTEX-1M5QR-2226-SM-HLJRV 40-49 years, male 479.4
GTEX-139T6-1026-SM-5IJGC 50-59 years, male 472.4
GTEX-1LGOU-1426-SM-D3L8N 20-29 years, female 472.2
GTEX-UPK5-2026-SM-4JBIM 40-49 years, male 459.9
GTEX-12BJ1-1926-SM-5HL9Z 60-69 years, male 451.1
GTEX-1EMGI-2826-SM-7IGMR 60-69 years, male 432.3
GTEX-131XG-1726-SM-5LZUR 50-59 years, female 409.1
GTEX-183FY-1626-SM-793D8 20-29 years, male 407.8
GTEX-1RQED-2826-SM-HLJQK 60-69 years, male 391.7
GTEX-1192X-2526-SM-59868 50-59 years, male 389.3
GTEX-1JJE9-2226-SM-CXZJM 70-79 years, male 381.5
GTEX-1BAJH-2526-SM-7IGOT 70-79 years, male 381.2
GTEX-1MUQO-2426-SM-EAZ5A 60-69 years, male 351.0
GTEX-1AMFI-1926-SM-731F2 50-59 years, female 343.7
GTEX-1MCYP-1626-SM-HLJQ5 20-29 years, female 336.4
GTEX-13QBU-1926-SM-5IJEW 40-49 years, female 312.1
GTEX-WEY5-1526-SM-4LMJF 40-49 years, female 274.9
GTEX-15EU6-1826-SM-7PC1W 50-59 years, male 215.4
GTEX-1R9PM-1626-SM-DPRY9 20-29 years, male 207.5
GTEX-1S5ZA-1326-SM-EV7BB 20-29 years, male 188.4
GTEX-12WSK-1526-SM-5CVNO 40-49 years, female 178.0
GTEX-1R9K4-2326-SM-E6CRB 60-69 years, male 173.9
GTEX-1JMQK-2426-SM-CXZJU 60-69 years, male 129.8
GTEX-117YX-0326-SM-5GICL 50-59 years, male 78.5
GTEX-1OKEX-1126-SM-DTXEB 60-69 years, male 65.9
GTEX-ZF2S-1726-SM-57WFT 50-59 years, female 64.6
GTEX-ZPU1-1826-SM-GNTB3 40-49 years, male 47.0
GTEX-178AV-1226-SM-GOR11 40-49 years, male 43.0
GTEX-14C39-1826-SM-5ZZW4 40-49 years, male 37.4
GTEX-Y111-2226-SM-4SOJB 50-59 years, male 35.1
GTEX-111CU-1326-SM-5NQ8L 50-59 years, male 25.5
GTEX-1S82Z-1826-SM-E9TIK 30-39 years, female 19.2
GTEX-Y5V5-1826-SM-4VDS5 60-69 years, female 17.3
GTEX-XMK1-1826-SM-4B66F 40-49 years, male 12.9
GTEX-WYJK-1526-SM-4ONCW 50-59 years, male 11.1
GTEX-1I1GT-1826-SM-ARZLW 60-69 years, female 11.0
GTEX-1QCLZ-2126-SM-EWRNC 60-69 years, female 10.6
GTEX-ZQUD-0926-SM-57WE3 30-39 years, male 8.5
GTEX-Y3I4-1326-SM-4TT8Z 50-59 years, male 7.4
GTEX-YB5K-1126-SM-H6Q6O 40-49 years, female 6.0
GTEX-17KNJ-1626-SM-718AL 50-59 years, male 4.9
GTEX-11LCK-1926-SM-5A5KE 30-39 years, male 3.6
GTEX-13OVI-1926-SM-5IJCG 60-69 years, female 3.2
GTEX-WFON-1526-SM-4LVMP 40-49 years, male 3.2
GTEX-13NYB-1826-SM-5J1N3 40-49 years, male 3.1
GTEX-XPT6-1026-SM-GOQYN 20-29 years, male 2.2
GTEX-XPVG-1726-SM-4B65W 50-59 years, male 2.0
GTEX-1LH75-1926-SM-DIPGD 50-59 years, female 1.7
GTEX-1R9JW-1926-SM-EVR4J 30-39 years, female 1.7
GTEX-ZAB5-1526-SM-5HL9P 50-59 years, male 1.2
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SMALL INTESTINE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

81.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Small intestine
Scaled Tags Per Million: 81.3
FF:10024-101D6 15,40,85 years, mixed 81.3

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