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TISSUE PRIMARY DATA KIDNEY Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
NASOPHARYNX ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Kidney
Tissue proteome
Kidney
Tissue methods
KIDNEY - Expression summary
Protein expression
Kidneyi

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Cells in glomeruli: Low
Cells in tubules: Low
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:3294.8 nTPM
HPA:1616.1 nTPM
GTEx:3294.8 nTPM
FANTOM5:30.0 Scaled Tags Per Million
KIDNEY - SINGLE CELL RNA EXPRESSION
Explore single cell type data

KIDNEY - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells. Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Ascending and descending describe two types of gradient, based on difference in staining intensity between enterocytes in crypts and apical enterocytes.

Ascending - the staining intensity is stronger in apical enterocytes (towards the lumen) compared to enterocytes in the crypts (gland based)

Descending - the staining is weaker in apical enterocytes compared to enterocytes in crypts

Antibody CAB033806
Cells in glomeruli Low
Cells in tubules Low


KIDNEY - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.

Average nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

1616.1
overview
Female, age 58
Kidney sample 55
nTPM: 1372.2
Cell types%
Cells in tubules:
60

Cells in glomeruli:
20

Fibroblasts:
5

Other cell types:
15

overview
Female, age 67
Kidney sample 56
nTPM: 1174.8
Cell types%
Cells in tubules:
70

Cells in glomeruli:
15

Fibroblasts:
10

Other cell types:
5

overview
Female, age 55
Kidney sample 57
nTPM: 2124.4
Cell types%
Cells in tubules:
80

Cells in glomeruli:
10

Fibroblasts:
5

Other cell types:
5

overview
Male, age 46
Kidney sample 58
nTPM: 1506.7
Cell types%
Cells in tubules:
60

Cells in glomeruli:
25

Fibroblasts:
5

Other cell types:
10

overview
Female, age 57
Kidney sample 358
nTPM: 1852.6
Cell types%
Cells in tubules:
60

Cells in glomeruli:
10

Fibroblasts:
10

Other cell types:
20

overview
Male, age 78
Kidney sample 377
nTPM: 1810.8
Cell types%
Cells in tubules:
65

Cells in glomeruli:
10

Fibroblasts:
5

Other cell types:
20

overview
Male, age 73
Kidney sample 380
nTPM: 1585.5
Cell types%
Cells in tubules:
60

Cells in glomeruli:
10

Fibroblasts:
10

Other cell types:
20

overview
Female, age 59
Kidney sample 394
nTPM: 1292.9
Cell types%
Cells in tubules:
65

Cells in glomeruli:
10

Fibroblasts:
10

Other cell types:
15

overview
Female, age 48
Kidney sample 414
nTPM: 1824.8
Cell types%
Cells in tubules:
60

Cells in glomeruli:
5

Fibroblasts:
10

Other cell types:
25


KIDNEY - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

3294.8
GTEx sample id Sample description nTPM
Kidney - Cortex
Average nTPM: 2862.6
Samples: 104

Max nTPM: 7744.2
Min nTPM: 1085.0
Std nTPM: 1024.9
Median nTPM: 2737.6
GTEX-1LH75-1326-SM-F2I1R 50-59 years, female 7744.2
GTEX-15DCD-1926-SM-HAV33 70-79 years, female 5529.6
GTEX-11TTK-1926-SM-5PNW8 60-69 years, female 5302.5
GTEX-1OJC4-2326-SM-DTXA5 50-59 years, female 5030.7
GTEX-ZXG5-2026-SM-HAUZV 60-69 years, male 4646.8
GTEX-1C6VQ-2326-SM-7IGN1 50-59 years, male 4569.8
GTEX-1QP6S-1526-SM-EXUSG 40-49 years, male 4498.5
GTEX-1LG7Y-2726-SM-D5OVW 50-59 years, male 4273.9
GTEX-13112-2126-SM-5GCO4 50-59 years, male 4226.5
GTEX-17F97-1926-SM-7IGM4 50-59 years, male 4172.9
GTEX-1N2DW-1826-SM-EAZ54 50-59 years, male 4116.2
GTEX-15CHQ-2126-SM-6871M 60-69 years, male 4109.6
GTEX-16XZY-1026-SM-HAV39 70-79 years, male 3967.8
GTEX-ZE9C-1426-SM-4WKGM 60-69 years, male 3849.2
GTEX-ZYT6-2226-SM-5GIC9 30-39 years, male 3778.9
GTEX-RN64-1626-SM-48FD7 50-59 years, male 3727.7
GTEX-1AX8Z-2326-SM-731CR 60-69 years, male 3679.9
GTEX-ZDXO-0226-SM-4WKH7 60-69 years, male 3626.9
GTEX-1PWST-2226-SM-EVR3G 70-79 years, male 3553.3
GTEX-1MUQO-2526-SM-E9TJN 60-69 years, male 3521.1
GTEX-13OVL-1826-SM-5KLZR 50-59 years, male 3501.1
GTEX-1GN1U-2126-SM-AHZ4J 50-59 years, female 3485.2
GTEX-W5X1-1626-SM-H7OGO 40-49 years, female 3480.2
GTEX-1E2YA-1626-SM-7MGXS 50-59 years, male 3414.0
GTEX-11OF3-1326-SM-5N9FJ 60-69 years, male 3394.8
GTEX-13RTJ-2226-SM-5S2Q1 60-69 years, male 3387.4
GTEX-1JMPZ-1226-SM-ARU8Y 30-39 years, male 3373.3
GTEX-1JJE9-1026-SM-HL9TH 70-79 years, male 3366.6
GTEX-147F4-2626-SM-5Q5CS 50-59 years, male 3285.9
GTEX-14PJ2-1826-SM-HL9UB 50-59 years, male 3226.0
GTEX-1O9I2-1926-SM-F2TBQ 50-59 years, male 3225.1
GTEX-ZLFU-0926-SM-5P9F8 40-49 years, male 3177.9
GTEX-14C39-2126-SM-664OH 40-49 years, male 3177.0
GTEX-1HB9E-1826-SM-D4P33 50-59 years, male 3167.9
GTEX-1A8FM-2026-SM-7P8RN 50-59 years, female 3150.2
GTEX-1ICLY-2026-SM-GA913 50-59 years, male 3139.8
GTEX-1A3MW-2226-SM-73KUX 60-69 years, female 3119.0
GTEX-13OW6-1826-SM-5N9F9 50-59 years, male 3117.2
GTEX-1399S-0526-SM-5IJG8 30-39 years, female 3103.0
GTEX-1HCU7-1826-SM-A9G2A 50-59 years, male 3036.3
GTEX-1HCVE-2126-SM-HL9UO 50-59 years, male 2994.7
GTEX-14E6D-2526-SM-5YYA9 50-59 years, male 2969.1
GTEX-14C5O-2026-SM-5YYB1 60-69 years, male 2966.4
GTEX-17F96-1926-SM-7MGWY 70-79 years, male 2935.0
GTEX-13FHP-2126-SM-GIN8J 50-59 years, male 2934.7
GTEX-1GTWX-1826-SM-9QEHG 60-69 years, male 2902.9
GTEX-11GS4-2326-SM-5A5KS 60-69 years, male 2884.4
GTEX-1R9PO-1626-SM-E6CPT 60-69 years, female 2795.2
GTEX-12696-0926-SM-5FQTV 60-69 years, male 2775.4
GTEX-WL46-1926-SM-GNIN6 50-59 years, male 2770.6
GTEX-16Z82-2826-SM-HAUZZ 60-69 years, male 2765.3
GTEX-T6MN-1826-SM-EXOHN 50-59 years, male 2750.2
GTEX-1RQEC-2426-SM-F2I1J 60-69 years, male 2725.0
GTEX-1IL2V-1826-SM-ARU7R 70-79 years, male 2706.9
GTEX-ZVZP-0926-SM-5GIDB 50-59 years, male 2690.4
GTEX-1NV8Z-2226-SM-EXOJ2 60-69 years, male 2654.4
GTEX-145MN-0326-SM-5QGQI 30-39 years, male 2643.8
GTEX-1F48J-2226-SM-7MXTN 50-59 years, female 2625.7
GTEX-1CB4J-1926-SM-7MGX8 60-69 years, male 2618.1
GTEX-1H3VY-1926-SM-9JGHJ 50-59 years, male 2610.3
GTEX-17HHY-2326-SM-7KFSR 50-59 years, male 2595.1
GTEX-1117F-2126-SM-GIN9G 60-69 years, female 2593.5
GTEX-1I1GP-1926-SM-CNNQU 50-59 years, male 2576.4
GTEX-13NYB-1726-SM-5N9G2 40-49 years, male 2554.8
GTEX-ZYFG-1626-SM-5GZYY 60-69 years, female 2516.9
GTEX-16XZZ-2226-SM-HAV34 60-69 years, male 2510.3
GTEX-1GF9V-1926-SM-9JGHE 60-69 years, male 2468.6
GTEX-1JMLX-1526-SM-AHZ3N 50-59 years, male 2466.2
GTEX-13O1R-2526-SM-5N9FW 60-69 years, male 2461.2
GTEX-Y5V5-1226-SM-EYYVP 60-69 years, female 2421.5
GTEX-1JMQK-1926-SM-CJI3B 60-69 years, male 2420.6
GTEX-1GF9W-1326-SM-7P8PX 60-69 years, male 2410.1
GTEX-1J1OQ-1426-SM-AHZ3P 40-49 years, female 2386.6
GTEX-1IKK5-0926-SM-A9G2U 60-69 years, male 2370.1
GTEX-15DYW-2026-SM-6AJBD 60-69 years, female 2351.3
GTEX-1EKGG-2226-SM-7IGOA 60-69 years, male 2348.1
GTEX-13OVI-1126-SM-5KLZF 60-69 years, female 2338.0
GTEX-1JJ6O-2526-SM-AHZ3J 60-69 years, male 2334.2
GTEX-1KWVE-0826-SM-CXZKO 30-39 years, male 2275.1
GTEX-1BAJH-1826-SM-731DA 70-79 years, male 2256.4
GTEX-1JMQJ-1726-SM-E9U4V 50-59 years, male 2155.5
GTEX-S33H-1426-SM-EZ6L7 30-39 years, male 2099.0
GTEX-1HBPI-2026-SM-CE6RZ 50-59 years, male 2024.5
GTEX-14JG1-2326-SM-HAUZ5 40-49 years, male 2003.7
GTEX-1H3NZ-2126-SM-9WPQ6 60-69 years, male 1981.4
GTEX-QLQW-1626-SM-CMKFE 30-39 years, male 1934.7
GTEX-NFK9-1826-SM-HL9T3 40-49 years, male 1911.6
GTEX-T5JC-1526-SM-4DM68 20-29 years, male 1902.2
GTEX-ZC5H-1726-SM-5HL7X 40-49 years, female 1828.7
GTEX-1N2EF-1426-SM-EXUSH 60-69 years, male 1790.8
GTEX-13O3O-1726-SM-GJ3RL 60-69 years, female 1776.2
GTEX-1GMR3-2426-SM-7MXV2 40-49 years, male 1744.3
GTEX-QDT8-1726-SM-EYYV6 30-39 years, female 1640.2
GTEX-12WSG-0826-SM-5EQ5A 50-59 years, female 1579.9
GTEX-16MT8-1926-SM-7EPGL 60-69 years, female 1579.9
GTEX-P4QS-1126-SM-3NMD5 60-69 years, male 1535.9
GTEX-XPVG-0526-SM-4B65N 50-59 years, male 1493.6
GTEX-REY6-1826-SM-EAZAT 60-69 years, male 1435.1
GTEX-Y5V6-2026-SM-5IFHO 60-69 years, male 1400.2
GTEX-QDVN-1726-SM-HL9TO 50-59 years, male 1353.5
GTEX-O5YV-1226-SM-EV795 60-69 years, female 1332.4
GTEX-1K9T9-1826-SM-CXZK2 50-59 years, female 1319.9
GTEX-1497J-0826-SM-5NQAJ 60-69 years, male 1170.7
GTEX-1QAET-2126-SM-F2TBS 50-59 years, male 1085.0
Show allShow less
Kidney - Medulla
Average nTPM: 3294.8
Samples: 11

Max nTPM: 5091.8
Min nTPM: 1635.9
Std nTPM: 1003.3
Median nTPM: 3077.7
GTEX-T6MN-1926-SM-GOQYD 50-59 years, male 5091.8
GTEX-QEG5-2026-SM-H6Q6I 20-29 years, male 4571.9
GTEX-SIU8-1926-SM-H7OG4 50-59 years, male 4316.4
GTEX-T5JC-1626-SM-EZ6KW 20-29 years, male 3597.1
GTEX-R55E-2026-SM-EZ6L1 20-29 years, male 3555.7
GTEX-S33H-1526-SM-GQ1CB 30-39 years, male 3077.7
GTEX-RU72-1926-SM-EAZ3F 50-59 years, female 3003.2
GTEX-QEG4-1526-SM-GPRWK 30-39 years, male 2584.1
GTEX-TKQ2-0626-SM-EZ6LB 50-59 years, male 2539.5
GTEX-N7MS-1526-SM-HAUZP 60-69 years, male 2269.9
GTEX-P4QS-1226-SM-HPAG8 60-69 years, male 1635.9
Show allShow less

KIDNEY - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

30.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Kidney
Scaled Tags Per Million: 30.0
FF:10017-101C8 60,62,63 years, female 30.0

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