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  • TMSB4X
TISSUE PRIMARY DATA AMYGDALA Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
NASOPHARYNX ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Tissue proteome
Amygdala
Tissue methods
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:3488.0 nTPM
HPA Brain:1514.4 nTPM
GTEx:3488.0 nTPM
FANTOM5:19.8 Scaled Tags Per Million
Pig:1040.9 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

1514.4
Sample id Sample description nTPM
Amygdala
nTPM: 1514.4
2695 Female, age 67, right hemisphere 2389.0
2514 Male, age 75, right hemisphere 1400.1
1987 Female, age 91, left hemisphere 1387.4
2814 Male, age 76, right hemisphere 1340.8
2517 Female, age 94, left hemisphere 1054.8
Basal amygdala
nTPM: 1179.2
2827 Female, age 67, right hemisphere 1844.6
2110 Male, age 80, left hemisphere 1296.2
2685 Female, age 94, left hemisphere 1105.4
1955 Male, age 76, both hemispheres 1064.2
2609 Male, age 75, right hemisphere 971.1
2243 Female, age 91, right hemisphere 793.9
Central amygdala
nTPM: 1345.8
2826 Female, age 94, left hemisphere 2280.4
2515 Male, age 75, right hemisphere 1379.7
1905 Male, age 76, both hemispheres 1227.6
2239 Male, age 80, left hemisphere 972.3
2701 Female, age 91, right hemisphere 868.9
Corticomedial amygdala
nTPM: 1033.9
2829 Male, age 80, left hemisphere 1198.5
2428 Male, age 75, right hemisphere 1164.2
2535 Female, age 67, right hemisphere 1080.2
2240 Male, age 76, both hemispheres 992.1
2242 Female, age 91, right hemisphere 950.4
2429 Female, age 94, left hemisphere 818.3
Lateral amygdala
nTPM: 1490.1
2830 Female, age 67, right hemisphere 2631.1
2534 Female, age 94, left hemisphere 1548.2
2516 Male, age 75, right hemisphere 1456.7
1883 Male, age 76, both hemispheres 1308.2
2256 Male, age 80, left hemisphere 1236.7
2255 Female, age 91, right hemisphere 760.0

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

3488.0
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 3488.0
Samples: 181

Max nTPM: 9769.6
Min nTPM: 1661.9
Std nTPM: 1174.9
Median nTPM: 3172.5
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 9769.6
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 8493.4
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 7515.1
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 6879.6
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 6684.1
GTEX-PVOW-0011-R4A-SM-H6Q8O 40-49 years, male 6513.3
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 6319.5
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 6131.1
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 5530.2
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 5377.1
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 5275.2
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 5261.7
GTEX-1MJK2-0011-R4a-SM-F3426 50-59 years, male 5033.3
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 4945.8
GTEX-1RQED-0011-R4b-SM-F2I2X 60-69 years, male 4916.6
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 4887.3
GTEX-11ZTS-0011-R4b-SM-GINAQ 60-69 years, female 4879.2
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 4862.4
GTEX-1PWST-0011-R4a-SM-F2T9X 70-79 years, male 4841.9
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 4816.1
GTEX-11DYG-0011-R4b-SM-GJ3RG 60-69 years, male 4783.7
GTEX-1QMI2-0011-R4b-SM-F3K4R 60-69 years, male 4782.4
GTEX-1NV8Z-0011-R4b-SM-G8LMZ 60-69 years, male 4781.7
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 4714.6
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 4678.9
GTEX-111FC-0011-R4a-SM-GIN8K 60-69 years, male 4650.5
GTEX-1PPGY-0011-R4a-SM-F3K4F 60-69 years, male 4501.3
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 4497.2
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 4469.3
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 4376.8
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 4376.3
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 4286.7
GTEX-1JJ6O-0011-R4a-SM-EY5YM 60-69 years, male 4248.4
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 4241.2
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 4229.0
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 4216.5
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 4174.3
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 4162.1
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 4160.6
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 4158.6
GTEX-1R46S-0011-R4b-SM-F2TBF 60-69 years, female 4148.3
GTEX-13PLJ-0011-R4b-SM-GJ3R6 60-69 years, female 4148.2
GTEX-15RJE-0011-R4a-SM-H7OH4 40-49 years, male 4056.8
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 4018.4
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 4013.9
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 4007.3
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 4004.6
GTEX-1P4AB-0011-R4b-SM-F2T9S 50-59 years, male 3958.2
GTEX-1RDX4-0011-R4b-SM-F3K43 50-59 years, female 3933.3
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 3932.8
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 3865.2
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 3851.0
GTEX-1POEN-0011-R4b-SM-F3K4O 30-39 years, female 3845.1
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 3779.3
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 3757.4
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 3757.2
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 3756.5
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 3712.9
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 3692.0
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 3631.8
GTEX-145LU-0011-R4b-SM-5P9K1 50-59 years, male 3622.2
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 3615.3
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 3584.4
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 3581.4
GTEX-11NV4-0011-R4a-SM-GI4XC 60-69 years, male 3579.4
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 3569.6
GTEX-14BMV-0011-R4a-SM-H6Q7P 50-59 years, male 3567.6
GTEX-1JMQK-0011-R4a-SM-G8LLQ 60-69 years, male 3564.4
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 3558.8
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 3546.7
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 3536.6
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 3512.1
GTEX-12WSC-0011-R4a-SM-H6Q8M 50-59 years, male 3503.0
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 3497.4
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 3471.4
GTEX-1117F-0011-R4b-SM-GI4VM 60-69 years, female 3454.5
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 3402.2
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 3375.4
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 3336.2
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 3327.9
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 3315.2
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 3282.4
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 3234.9
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 3232.0
GTEX-1JMLX-0011-R4a-SM-EY5YJ 50-59 years, male 3231.6
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 3229.4
GTEX-12ZZY-0011-R4a-SM-GIN9F 60-69 years, male 3212.3
GTEX-11OF3-0011-R4a-SM-GJ3RB 60-69 years, male 3199.3
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 3195.9
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 3181.6
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 3172.5
GTEX-1LH75-0011-R4a-SM-F2TAM 50-59 years, female 3165.3
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 3160.6
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 3160.5
GTEX-13FHO-0011-R4b-SM-H6611 60-69 years, male 3142.5
GTEX-14C5O-0011-R4b-SM-G9ERF 60-69 years, male 3140.6
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 3132.3
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 3118.6
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 3111.3
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 3101.9
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 3095.4
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 3080.8
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 3076.6
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 3049.8
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 3043.2
GTEX-1RLM8-0011-R4a-SM-F2TBL 50-59 years, male 3040.4
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 3033.1
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 3025.0
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 3022.8
GTEX-1JMOU-0011-R4b-SM-EY5ZL 60-69 years, female 3007.5
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 2983.8
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 2979.2
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 2975.6
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 2972.8
GTEX-1LVA9-0011-R4a-SM-F2TA2 50-59 years, male 2959.2
GTEX-147F4-0011-R4b-SM-GJ3R4 50-59 years, male 2954.0
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 2923.2
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 2901.7
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 2880.7
GTEX-1PIIG-0011-R4a-SM-F2TAQ 30-39 years, male 2878.1
GTEX-1LB8K-0011-R4b-SM-F6487 50-59 years, male 2877.6
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 2876.1
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 2875.2
GTEX-1O9I2-0011-R4b-SM-F3K4K 50-59 years, male 2868.6
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 2827.1
GTEX-117XS-0011-R4b-SM-GJ3PR 60-69 years, male 2824.6
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 2809.3
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 2788.2
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 2768.2
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 2744.7
GTEX-11GS4-0011-R4a-SM-GJ3RJ 60-69 years, male 2714.0
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 2685.4
GTEX-1QP6S-0011-R4b-SM-F33ZY 40-49 years, male 2656.9
GTEX-1OJC4-0011-R4a-SM-F3K54 50-59 years, female 2645.4
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 2640.8
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 2636.5
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 2630.3
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 2625.6
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 2621.4
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 2610.9
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 2602.1
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 2585.9
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 2585.9
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 2578.3
GTEX-1JN1M-0011-R4b-SM-F6494 60-69 years, female 2569.5
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 2567.8
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 2566.7
GTEX-1RQEC-0011-R4b-SM-F342C 60-69 years, male 2565.9
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 2565.2
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 2548.4
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 2523.3
GTEX-11DXY-0011-R4b-SM-GI4VR 60-69 years, male 2520.9
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 2508.4
GTEX-1KWVE-0011-R4a-SM-F3K5X 30-39 years, male 2500.4
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 2483.2
GTEX-13QJC-0011-R4a-SM-H65ZP 60-69 years, female 2479.0
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 2472.8
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 2465.3
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 2455.4
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 2455.3
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 2448.8
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 2426.2
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 2424.9
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 2421.4
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 2375.8
GTEX-ZYY3-0011-R4a-SM-GQ1CY 60-69 years, female 2361.1
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 2354.9
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 2343.5
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 2338.7
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 2323.7
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 2279.8
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 2270.9
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 2245.1
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 2239.0
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 2226.5
GTEX-1N2EF-0011-R4a-SM-F341F 60-69 years, male 2216.1
GTEX-1LKK1-0011-R4b-SM-EY5YA 50-59 years, female 2207.8
GTEX-11GSO-0011-R4b-SM-GJ3R8 60-69 years, male 2191.8
GTEX-ZZPT-0011-R4a-SM-GPRX4 50-59 years, male 1805.7
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 1738.0
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 1661.9
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

19.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 19.8
FF:10151-102I7 76 years, female 19.8

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

1040.9
Pig sample Sample description nTPM
Amygdala
nTPM: 1040.9
Samples: 4

Max nTPM: 1400.9
Min nTPM: 637.4
Sample A Female 1266.8
Sample B Female 1400.9
Sample C Male 858.5
Sample D Male 637.4

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