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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
63.3
nTPM
HPA Brain:
14.6
nTPM
GTEx:
63.3
nTPM
FANTOM5:
126.7
Scaled Tags Per Million
Pig:
50.0
nTPM
Mouse:
11.2
nTPM
Allen mouse:
0.1
Expression energy
MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
14.6
Sample id
Sample description
nTPM
Cuneiform nucleus nTPM: 6.9
1830
Male, age 51, unknown
8.9
2019
Male, age 18, unknown
8.8
2828
Female, age 72, unknown
8.6
1870
Female, age 42, unknown
8.5
2411
Female, age 72, unknown
8.1
1833
Male, age 53, unknown
7.2
1827
Male, age 72, unknown
5.8
2219
Male, age 76, both hemispheres
5.5
2666
Male, age 74, left hemisphere
5.0
2586
Male, age 75, left hemisphere
2.5
Dorsal raphe nucleus nTPM: 12.1
2298
Female, age 72, unknown
20.5
2016
Female, age 72, unknown
13.7
2750
Male, age 76, both hemispheres
10.3
1828
Male, age 53, unknown
8.7
2047
Male, age 72, unknown
7.1
Inferior colliculus nTPM: 8.9
2097
Female, age 72, unknown
12.3
1890
Male, age 53, unknown
8.8
2849
Male, age 72, unknown
7.4
1848
Female, age 42, unknown
7.0
Median raphe nucleus nTPM: 8.5
2220
Male, age 76, midline
8.5
Periaquaductal grey, anterior nTPM: 6.1
1795
Male, age 51, unknown
9.1
1947
Male, age 18, unknown
5.4
2502
Female, age 75, unknown
3.9
Periaquaductal grey, dorsal nTPM: 9.8
1831
Male, age 72, unknown
13.6
2850
Male, age 76, both hemispheres
9.9
1840
Male, age 53, unknown
9.4
2464
Female, age 72, unknown
6.4
Periaquaductal grey, lateral nTPM: 10.7
2272
Male, age 74, both hemispheres
13.6
2053
Male, age 18, unknown
9.7
2140
Male, age 76, both hemispheres
8.9
Pretectal area nTPM: 9.9
2273
Male, age 74, both hemispheres
15.9
2224
Female, age 72, unknown
13.9
2316
Male, age 76, right hemisphere
13.9
2407
Male, age 75, both hemispheres
11.1
1944
Female, age 72, unknown
10.9
1817
Female, age 42, unknown
10.6
1815
Male, age 53, unknown
10.1
2825
Male, age 18, unknown
7.4
2007
Male, age 72, unknown
7.3
1816
Male, age 51, unknown
3.6
2667
Female, age 75, unknown
3.6
Red nucleus nTPM: 9.4
2725
Female, age 75, unknown
21.5
1865
Male, age 51, unknown
13.6
2503
Female, age 72, unknown
12.7
2823
Male, age 76, right hemisphere
10.1
1904
Male, age 53, unknown
9.3
2769
Male, age 72, unknown
9.0
2227
Male, age 72, unknown
8.5
1821
Female, age 72, unknown
8.3
2785
Male, age 18, unknown
7.2
1954
Female, age 42, unknown
6.7
2584
Male, age 75, left hemisphere
4.1
2588
Male, age 74, left hemisphere
1.4
Substantia nigra nTPM: 14.6
2590
Female, age 75, unknown
34.4
2699
Male, age 18, unknown
22.0
2665
Male, age 74, both hemispheres
18.7
1916
Female, age 42, unknown
12.3
2241
Male, age 72, unknown
12.0
1851
Male, age 51, unknown
11.4
1941
Male, age 53, unknown
11.2
1889
Female, age 72, unknown
9.1
2583
Male, age 75, right hemisphere
7.5
2409
Female, age 72, unknown
7.4
Superior colliculus nTPM: 8.7
1913
Female, age 42, unknown
17.7
2587
Male, age 74, left hemisphere
14.6
1995
Male, age 72, unknown
13.2
2087
Female, age 72, unknown
8.5
1796
Male, age 53, unknown
6.3
1895
Male, age 76, right hemisphere
6.1
1839
Male, age 51, unknown
6.0
2664
Male, age 75, both hemispheres
6.0
2261
Male, age 18, unknown
5.4
2668
Female, age 75, unknown
3.3
Ventral tegmental area nTPM: 10.6
2021
Male, age 53, unknown
13.6
1915
Female, age 42, unknown
13.3
1942
Male, age 51, unknown
10.3
2218
Male, age 76, both hemispheres
10.3
2410
Female, age 72, unknown
9.7
2223
Female, age 72, unknown
6.4
MIDBRAIN - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
63.3
GTEx sample id
Sample description
nTPM
Brain - Substantia nigra Average nTPM: 63.3
Samples: 139
Max nTPM: 307.0
Min nTPM: 6.2
Std nTPM: 57.0
Median nTPM: 44.6
GTEX-1F48J-0011-R2a-SM-CL535
50-59 years, female
307.0
GTEX-R55E-0011-R2A-SM-EYYV9
20-29 years, male
274.9
GTEX-14PN4-0011-R2a-SM-6EU2Y
50-59 years, male
270.7
GTEX-PWO3-0011-R2A-SM-2S1OX
60-69 years, female
225.8
GTEX-1JMQK-0011-R2a-SM-EYYXQ
60-69 years, male
214.7
GTEX-NL4W-0011-R2a-SM-2I5GV
50-59 years, male
194.8
GTEX-1H1DG-0011-R2a-SM-ADEIQ
70-79 years, male
188.5
GTEX-T2IS-0011-R2A-SM-32QPF
20-29 years, female
174.5
GTEX-1GN1U-0011-R2a-SM-CL53A
50-59 years, female
164.9
GTEX-1HB9E-0011-R2b-SM-A96RW
50-59 years, male
164.8
GTEX-15RJE-0011-R2b-SM-79OMP
40-49 years, male
141.9
GTEX-1LH75-0011-R2b-SM-EYYWQ
50-59 years, female
140.5
GTEX-13NYB-0011-R2a-SM-5MR3C
40-49 years, male
139.1
GTEX-X585-0011-R2B-SM-46MVF
50-59 years, male
137.4
GTEX-N7MT-0011-R2a-SM-2I3GI
60-69 years, female
135.8
GTEX-132Q8-0011-R2b-SM-5EQ5Z
60-69 years, male
131.0
GTEX-1H3O1-0011-R2b-SM-CKZOT
60-69 years, male
126.5
GTEX-12WSF-0011-R2a-SM-5DUVU
70-79 years, male
125.0
GTEX-1IGQW-0011-R2b-SM-D4P26
60-69 years, male
124.7
GTEX-1IY9M-0011-R2a-SM-D4P29
60-69 years, male
120.6
GTEX-13X6K-0011-R2b-SM-5P9K3
60-69 years, female
113.0
GTEX-NPJ8-0011-R2a-SM-2TC6M
40-49 years, male
111.7
GTEX-1LVAO-0011-R2a-SM-EYYX1
60-69 years, male
110.7
GTEX-NPJ7-0011-R2a-SM-2I3GF
60-69 years, female
106.7
GTEX-YFC4-0011-R2a-SM-4V6DZ
40-49 years, female
105.5
GTEX-1HSMO-0011-R2a-SM-CL553
60-69 years, male
104.3
GTEX-1HFI6-0011-R2a-SM-CMKH5
40-49 years, male
99.0
GTEX-11GS4-0011-R2a-SM-DO942
60-69 years, male
98.1
GTEX-13X6I-0011-R2b-SM-5PNWQ
60-69 years, male
97.1
GTEX-13G51-0011-R2b-SM-5LZXS
60-69 years, male
94.1
GTEX-T5JC-0011-R2A-SM-32PLZ
20-29 years, male
90.6
GTEX-1A3MX-0011-R2b-SM-7EWFL
60-69 years, male
89.6
GTEX-1HR98-0011-R2a-SM-ARL7A
60-69 years, male
87.9
GTEX-14BIM-0011-R2b-SM-69LQ6
60-69 years, female
87.5
GTEX-13RTJ-0011-R2a-SM-5PNW9
60-69 years, male
87.2
GTEX-1CB4G-0011-R2a-SM-9QEGQ
60-69 years, male
86.7
GTEX-1399T-0011-R2b-SM-5DUXM
60-69 years, male
86.0
GTEX-15DCD-0011-R2b-SM-6LPIE
70-79 years, female
84.4
GTEX-T6MN-0011-R2A-SM-32QOW
50-59 years, male
82.0
GTEX-12WSA-0011-R2a-SM-57WDK
60-69 years, male
81.9
GTEX-OHPN-0011-R2A-SM-2I5FB
60-69 years, female
79.9
GTEX-11TUW-0011-R2b-SM-DO92T
60-69 years, male
76.8
GTEX-XLM4-0011-R2B-SM-4AT5Z
60-69 years, male
72.2
GTEX-14C5O-0011-R2a-SM-5ZZV2
60-69 years, male
71.2
GTEX-11DZ1-0011-R2a-SM-DNZZM
50-59 years, male
69.4
GTEX-16Z82-0011-R2b-SM-79OK9
60-69 years, male
68.6
GTEX-1F6IF-0011-R2b-SM-9QEHB
60-69 years, male
67.0
GTEX-YJ89-0011-R2b-SM-4RGLT
60-69 years, male
66.9
GTEX-13FXS-0011-R2b-SM-5K7XX
50-59 years, male
61.1
GTEX-145LS-0011-R2a-SM-5PNZI
60-69 years, female
60.3
GTEX-XMD1-0011-R2B-SM-4AT5N
60-69 years, male
59.2
GTEX-1EMGI-0011-R2b-SM-9OSVS
60-69 years, male
58.8
GTEX-UTHO-0011-R2A-SM-3GIKC
60-69 years, male
58.1
GTEX-WHSE-0011-R2A-SM-3P5ZL
20-29 years, male
57.7
GTEX-15EO6-0011-R2a-SM-6M46R
50-59 years, male
57.0
GTEX-12WSH-0011-R2a-SM-5GU68
50-59 years, male
55.7
GTEX-1GN73-0011-R2a-SM-CJI2V
60-69 years, male
55.3
GTEX-1A8G7-0011-R2a-SM-7IGQI
60-69 years, male
54.1
GTEX-11EMC-0011-R2b-SM-DO114
60-69 years, female
52.5
GTEX-15DYW-0011-R2b-SM-7KUKY
60-69 years, female
51.4
GTEX-N7MS-0011-R2a-SM-2HML6
60-69 years, male
51.2
GTEX-13NYS-0011-R2b-SM-5MR4G
60-69 years, male
50.5
GTEX-1EU9M-0011-R2b-SM-9QEH7
60-69 years, male
50.2
GTEX-11PRG-0011-R2a-SM-69LQ5
50-59 years, male
49.9
GTEX-1GZ2Q-0011-R2b-SM-9OSWO
40-49 years, male
49.0
GTEX-QDT8-0011-R2A-SM-32PKQ
30-39 years, female
47.1
GTEX-1IKJJ-0011-R2b-SM-ARZLJ
60-69 years, male
46.6
GTEX-1GMR8-0011-R2a-SM-CE6RD
50-59 years, female
46.2
GTEX-1LSNL-0011-R2a-SM-EZ6MK
50-59 years, male
44.8
GTEX-1LVA9-0011-R2a-SM-EZ6MJ
50-59 years, male
44.6
GTEX-13OVJ-0011-R2b-SM-5L3GP
50-59 years, female
43.8
GTEX-15CHQ-0011-R2b-SM-6AJAD
60-69 years, male
43.3
GTEX-139TS-0011-R2b-SM-5J1MX
60-69 years, male
42.9
GTEX-1I1CD-0011-R2a-SM-CM2T3
60-69 years, female
42.9
GTEX-X4XX-0011-R2A-SM-3P623
60-69 years, male
42.0
GTEX-12ZZX-0011-R2a-SM-5EGLG
40-49 years, female
41.9
GTEX-1IKOH-0011-R2a-SM-CMKHO
60-69 years, female
40.4
GTEX-11ZTS-0011-R2b-SM-5BC75
60-69 years, female
38.9
GTEX-13O3Q-0011-R2b-SM-5KM3K
50-59 years, male
38.7
GTEX-11GSO-0011-R2a-SM-57WDF
60-69 years, male
37.9
GTEX-11WQC-0011-R2a-SM-DO927
60-69 years, male
37.9
GTEX-14JG1-0011-R2a-SM-5ZZVE
40-49 years, male
37.1
GTEX-1B996-0011-R2a-SM-7IGON
60-69 years, male
36.7
GTEX-1F75B-0011-R2a-SM-ARL8I
50-59 years, male
34.8
GTEX-13OW6-0011-R2a-SM-5L3HG
50-59 years, male
34.7
GTEX-13N2G-0011-R2a-SM-5MR4Q
60-69 years, male
34.5
GTEX-1313W-0011-R2a-SM-5EGLF
50-59 years, female
34.3
GTEX-131XH-0011-R2b-SM-5DUVY
50-59 years, male
34.0
GTEX-1B933-0011-R2b-SM-7IGNM
50-59 years, female
33.0
GTEX-QMR6-0011-R2A-SM-32PKV
50-59 years, male
32.7
GTEX-1I1GS-0011-R2b-SM-CMKHG
60-69 years, male
31.1
GTEX-1J8Q2-0011-R2b-SM-EAZ2X
60-69 years, male
30.9
GTEX-1C6VR-0011-R2a-SM-7RHGZ
60-69 years, male
30.7
GTEX-147GR-0011-R2b-SM-5S2RQ
60-69 years, male
30.1
GTEX-Q2AG-0011-R2A-SM-2HMIT
40-49 years, female
29.5
GTEX-13SLX-0011-R2b-SM-5S2VP
50-59 years, female
29.3
GTEX-1B8SG-0011-R2b-SM-79OOT
50-59 years, male
29.1
GTEX-14PJO-0011-R2a-SM-5ZZVF
60-69 years, male
27.9
GTEX-ZAB4-0011-R2a-SM-4RGNP
40-49 years, male
26.6
GTEX-1B8L1-0011-R2a-SM-9OSVL
60-69 years, male
25.1
GTEX-1H23P-0011-R2a-SM-CKZP3
60-69 years, male
24.8
GTEX-RU72-0011-R2A-SM-2TF6O
50-59 years, female
24.3
GTEX-1GTWX-0011-R2b-SM-ADEH5
60-69 years, male
23.1
GTEX-1445S-0011-R2b-SM-5PNUH
60-69 years, male
22.2
GTEX-15ER7-0011-R2a-SM-6M46O
20-29 years, female
21.9
GTEX-18464-0011-R2a-SM-731AL
50-59 years, male
21.0
GTEX-17HG3-0011-R2a-SM-7MGVX
30-39 years, female
20.6
GTEX-13QJC-0011-R2b-SM-5PNUN
60-69 years, female
20.5
GTEX-1EKGG-0011-R2a-SM-CE6R8
60-69 years, male
20.2
GTEX-1GN2E-0011-R2a-SM-9WG7D
60-69 years, male
19.8
GTEX-1I1GV-0011-R2a-SM-ARZLF
60-69 years, male
19.6
GTEX-ZV68-0011-R2a-SM-4YCDK
50-59 years, female
19.5
GTEX-1E1VI-0011-R2a-SM-9QEGS
50-59 years, male
18.8
GTEX-14ASI-0011-R2b-SM-5YY9H
60-69 years, male
18.4
GTEX-1H3VE-0011-R2a-SM-CE6SA
40-49 years, male
18.0
GTEX-1IL2U-0011-R2a-SM-ARU6V
60-69 years, male
17.9
GTEX-ZE9C-0011-R2a-SM-4WKGH
60-69 years, male
17.1
GTEX-11UD1-0011-R2b-SM-5BC6O
40-49 years, female
16.8
GTEX-11GSP-0011-R2b-SM-9QEGE
60-69 years, female
15.1
GTEX-1HT8W-0011-R2a-SM-CMKH9
30-39 years, male
15.0
GTEX-13CF2-0011-R2a-SM-5L3DC
60-69 years, male
14.4
GTEX-13O3O-0011-R2b-SM-5P9H1
60-69 years, female
14.4
GTEX-1F6I4-0011-R2a-SM-CL536
60-69 years, male
14.4
GTEX-1J1OQ-0011-R2b-SM-ARU88
40-49 years, female
13.8
GTEX-13PDP-0011-R2b-SM-5O9DH
60-69 years, male
13.4
GTEX-14BIN-0011-R2a-SM-5S2RJ
50-59 years, female
13.1
GTEX-1MA7X-0011-R2b-SM-EZ6MT
60-69 years, male
12.4
GTEX-OXRO-0011-R2A-SM-3NB1W
60-69 years, female
12.2
GTEX-P44G-0011-R2A-SM-2XCD2
30-39 years, male
11.5
GTEX-13OW8-0011-R2a-SM-5L3G2
60-69 years, male
10.6
GTEX-17EVP-0011-R2a-SM-7LG4W
40-49 years, male
10.0
GTEX-12WSD-0011-R2a-SM-5LZWB
60-69 years, female
9.6
GTEX-S7SE-0011-R2A-SM-2XCDC
50-59 years, male
9.4
GTEX-1H1ZS-0011-R2b-SM-CL54Q
70-79 years, male
8.8
GTEX-1LB8K-0011-R2a-SM-EZ6MQ
50-59 years, male
8.8
GTEX-13SLW-0011-R2b-SM-5O9C6
70-79 years, male
7.8
GTEX-Z93S-0011-R2a-SM-4RGNG
50-59 years, male
7.5
GTEX-1RLM8-0011-R2a-SM-EZ6N4
50-59 years, male
6.3
GTEX-ZDXO-0011-R2b-SM-4WKFG
60-69 years, male
6.2
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MIDBRAIN - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
11.2
Mouse sample
Sample description
nTPM
Midbrain nTPM: 11.2
Samples: 4
Max nTPM: 14.1
Min nTPM: 9.1
Sample A
Male
12.3
Sample B
Male
14.1
Sample C
Female
9.4
Sample D
Female
9.1
MIDBRAIN - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.