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A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
93.9
nTPM
Monaco:
61.9
nTPM
Schmiedel:
18.3
TPM
T-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
93.9
HPA sample
nTPM
gdT-cell nTPM: 84.4
Samples: 6
Max nTPM: 123.2
Min nTPM: 46.9
P10809_1007
46.9
P10809_1022
84.8
P10809_1041
123.2
P10809_1060
89.6
P10809_1077
72.7
P10809_1098
89.1
MAIT T-cell nTPM: 84.1
Samples: 6
Max nTPM: 105.0
Min nTPM: 46.5
P10809_1006
46.5
P10809_1024
90.6
P10809_1043
94.9
P10809_1062
84.9
P10809_1083
82.9
P10809_1097
105.0
Memory CD4 T-cell nTPM: 86.3
Samples: 6
Max nTPM: 100.2
Min nTPM: 57.2
P10809_1014
57.2
P10809_1026
97.7
P10809_1045
100.2
P10809_1064
96.5
P10809_1086
78.9
P10809_1113
87.0
Memory CD8 T-cell nTPM: 79.1
Samples: 5
Max nTPM: 95.0
Min nTPM: 60.1
P10809_1012
60.1
P10809_1027
81.2
P10809_1046
95.0
P10809_1065
85.2
P10809_1111
73.9
Naive CD4 T-cell nTPM: 85.1
Samples: 6
Max nTPM: 118.4
Min nTPM: 48.9
P10809_1015
48.9
P10809_1030
84.7
P10809_1049
118.4
P10809_1068
76.9
P10809_1085
95.6
P10809_1112
86.1
Naive CD8 T-cell nTPM: 82.0
Samples: 6
Max nTPM: 105.6
Min nTPM: 52.8
P10809_1016
52.8
P10809_1031
105.6
P10809_1050
89.8
P10809_1069
84.3
P10809_1087
68.9
P10809_1110
90.3
T-reg nTPM: 93.9
Samples: 6
Max nTPM: 143.9
Min nTPM: 68.4
P10809_1018
68.4
P10809_1037
83.0
P10809_1056
143.9
P10809_1075
80.2
P10809_1094
97.3
P10809_1106
90.7
T-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
61.9
Monaco sample
nTPM
Central memory CD8 T-cell nTPM: 47.2
Samples: 4
Max nTPM: 56.5
Min nTPM: 37.8
RHH5202_R3573
48.8
RHH5230_R3602
45.6
RHH5259_R3631
37.8
RHH5288_R3660
56.5
Effector memory CD8 T-cell nTPM: 53.0
Samples: 4
Max nTPM: 56.6
Min nTPM: 47.3
RHH5203_R3574
56.6
RHH5231_R3603
52.3
RHH5260_R3632
47.3
RHH5289_R3661
55.8
MAIT T-cell nTPM: 48.7
Samples: 4
Max nTPM: 67.8
Min nTPM: 28.3
RHH5233_R3605
45.3
RHH5205_R3576
28.3
RHH5262_R3634
53.3
RHH5297_R3663
67.8
Memory CD4 T-cell TFH nTPM: 61.9
Samples: 4
Max nTPM: 79.6
Min nTPM: 51.5
RHH5300_R3666
64.2
RHH5236_R3608
79.6
RHH5265_R3637
51.5
RHH5208_R3579
52.4
Memory CD4 T-cell Th1 nTPM: 53.8
Samples: 4
Max nTPM: 66.3
Min nTPM: 40.9
RHH5210_R3581
66.3
RHH5302_R3668
66.2
RHH5238_R3610
41.8
RHH5267_R3639
40.9
Memory CD4 T-cell Th1/Th17 nTPM: 51.8
Samples: 4
Max nTPM: 77.9
Min nTPM: 14.1
RHH5303_R3669
77.9
RHH5211_R3582
73.6
RHH5239_R3611
14.1
RHH5268_R3640
41.7
Memory CD4 T-cell Th17 nTPM: 49.4
Samples: 4
Max nTPM: 73.4
Min nTPM: 34.0
RHH5304_R3670
51.4
RHH5212_R3583
73.4
RHH5240_R3612
38.9
RHH5269_R3641
34.0
Memory CD4 T-cell Th2 nTPM: 61.1
Samples: 4
Max nTPM: 62.6
Min nTPM: 57.7
RHH5305_R3671
62.6
RHH5213_R3584
62.1
RHH5241_R3613
57.7
RHH5270_R3642
62.0
Naive CD4 T-cell nTPM: 61.7
Samples: 4
Max nTPM: 87.2
Min nTPM: 47.8
RHH5306_R3672
60.5
RHH5214_R3585
87.2
RHH5242_R3614
51.4
RHH5271_R3643
47.8
Naive CD8 T-cell nTPM: 57.7
Samples: 4
Max nTPM: 75.7
Min nTPM: 19.8
RHH5201_R3572
75.7
RHH5229_R3601
19.8
RHH5258_R3630
68.6
RHH5287_R3659
66.6
Non-Vd2 gdTCR nTPM: 53.7
Samples: 4
Max nTPM: 82.8
Min nTPM: 32.3
RHH5235_R3607
32.3
RHH5264_R3636
82.8
RHH5207_R3578
41.3
RHH5299_R3665
58.4
T-reg nTPM: 56.5
Samples: 4
Max nTPM: 73.2
Min nTPM: 47.9
RHH5301_R3667
52.8
RHH5237_R3609
73.2
RHH5266_R3638
47.9
RHH5209_R3580
52.2
Terminal effector memory CD4 T-cell nTPM: 48.9
Samples: 2
Max nTPM: 61.3
Min nTPM: 36.5
RHH5243_R3615
36.5
RHH5272_R3644
61.3
Terminal effector memory CD8 T-cell nTPM: 52.7
Samples: 4
Max nTPM: 60.8
Min nTPM: 40.6
RHH5232_R3604
60.8
RHH5204_R3575
51.0
RHH5261_R3633
40.6
RHH5296_R3662
58.2
Vd2 gdTCR nTPM: 46.0
Samples: 4
Max nTPM: 53.5
Min nTPM: 37.8
RHH5234_R3606
40.8
RHH5206_R3577
53.5
RHH5263_R3635
37.8
RHH5298_R3664
51.9
T-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
The Human Protein Atlas project is funded
