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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
66.2
nTPM
HPA Brain:
24.3
nTPM
GTEx:
66.2
nTPM
FANTOM5:
31.9
Scaled Tags Per Million
Pig:
91.3
nTPM
Mouse:
55.8
nTPM
Allen mouse:
1.1
Expression energy
MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
24.3
Sample id
Sample description
nTPM
Cuneiform nucleus nTPM: 24.3
2219
Male, age 76, both hemispheres
190.5
2586
Male, age 75, left hemisphere
7.4
2828
Female, age 72, unknown
7.1
1870
Female, age 42, unknown
6.2
1827
Male, age 72, unknown
5.5
1830
Male, age 51, unknown
5.4
1833
Male, age 53, unknown
5.4
2019
Male, age 18, unknown
5.4
2411
Female, age 72, unknown
4.8
2666
Male, age 74, left hemisphere
4.8
Dorsal raphe nucleus nTPM: 4.6
2047
Male, age 72, unknown
5.5
1828
Male, age 53, unknown
5.4
2750
Male, age 76, both hemispheres
4.5
2016
Female, age 72, unknown
4.2
2298
Female, age 72, unknown
3.5
Inferior colliculus nTPM: 5.6
1848
Female, age 42, unknown
7.3
2849
Male, age 72, unknown
5.5
1890
Male, age 53, unknown
5.4
2097
Female, age 72, unknown
4.1
Median raphe nucleus nTPM: 4.5
2220
Male, age 76, midline
4.5
Periaquaductal grey, anterior nTPM: 6.2
1947
Male, age 18, unknown
7.0
1795
Male, age 51, unknown
6.5
2502
Female, age 75, unknown
5.0
Periaquaductal grey, dorsal nTPM: 5.0
1831
Male, age 72, unknown
5.5
1840
Male, age 53, unknown
5.4
2850
Male, age 76, both hemispheres
5.2
2464
Female, age 72, unknown
3.9
Periaquaductal grey, lateral nTPM: 5.5
2272
Male, age 74, both hemispheres
6.5
2053
Male, age 18, unknown
5.6
2140
Male, age 76, both hemispheres
4.5
Pretectal area nTPM: 5.8
2667
Female, age 75, unknown
9.3
1816
Male, age 51, unknown
7.4
1817
Female, age 42, unknown
6.3
1944
Female, age 72, unknown
6.0
2825
Male, age 18, unknown
5.6
2007
Male, age 72, unknown
5.5
1815
Male, age 53, unknown
5.4
2273
Male, age 74, both hemispheres
4.8
2407
Male, age 75, both hemispheres
4.7
2224
Female, age 72, unknown
4.5
2316
Male, age 76, right hemisphere
4.5
Red nucleus nTPM: 5.6
2584
Male, age 75, left hemisphere
10.9
1865
Male, age 51, unknown
5.6
2785
Male, age 18, unknown
5.6
2227
Male, age 72, unknown
5.5
2769
Male, age 72, unknown
5.5
1904
Male, age 53, unknown
5.4
1821
Female, age 72, unknown
5.2
2725
Female, age 75, unknown
5.0
1954
Female, age 42, unknown
4.9
2588
Male, age 74, left hemisphere
4.8
2503
Female, age 72, unknown
4.5
2823
Male, age 76, right hemisphere
4.5
Substantia nigra nTPM: 5.6
1941
Male, age 53, unknown
7.5
1851
Male, age 51, unknown
6.1
2409
Female, age 72, unknown
6.0
2699
Male, age 18, unknown
5.9
1889
Female, age 72, unknown
5.8
2241
Male, age 72, unknown
5.5
2590
Female, age 75, unknown
5.0
1916
Female, age 42, unknown
4.9
2665
Male, age 74, both hemispheres
4.8
2583
Male, age 75, right hemisphere
4.7
Superior colliculus nTPM: 5.6
1995
Male, age 72, unknown
7.0
2261
Male, age 18, unknown
6.8
1895
Male, age 76, right hemisphere
6.7
2087
Female, age 72, unknown
5.8
1796
Male, age 53, unknown
5.4
1839
Male, age 51, unknown
5.3
2668
Female, age 75, unknown
5.0
1913
Female, age 42, unknown
4.9
2587
Male, age 74, left hemisphere
4.8
2664
Male, age 75, both hemispheres
4.7
Ventral tegmental area nTPM: 5.1
1942
Male, age 51, unknown
5.5
2021
Male, age 53, unknown
5.4
2410
Female, age 72, unknown
5.3
2223
Female, age 72, unknown
5.1
1915
Female, age 42, unknown
4.9
2218
Male, age 76, both hemispheres
4.5
MIDBRAIN - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
66.2
GTEx sample id
Sample description
nTPM
Brain - Substantia nigra Average nTPM: 66.2
Samples: 139
Max nTPM: 112.8
Min nTPM: 36.8
Std nTPM: 11.2
Median nTPM: 66.7
GTEX-1RLM8-0011-R2a-SM-EZ6N4
50-59 years, male
112.8
GTEX-1LB8K-0011-R2a-SM-EZ6MQ
50-59 years, male
93.8
GTEX-1IKOH-0011-R2a-SM-CMKHO
60-69 years, female
90.5
GTEX-12WSD-0011-R2a-SM-5LZWB
60-69 years, female
87.5
GTEX-17HG3-0011-R2a-SM-7MGVX
30-39 years, female
84.7
GTEX-1EMGI-0011-R2b-SM-9OSVS
60-69 years, male
83.7
GTEX-1B8L1-0011-R2a-SM-9OSVL
60-69 years, male
83.4
GTEX-1A8G7-0011-R2a-SM-7IGQI
60-69 years, male
82.0
GTEX-1MA7X-0011-R2b-SM-EZ6MT
60-69 years, male
81.7
GTEX-NPJ7-0011-R2a-SM-2I3GF
60-69 years, female
81.5
GTEX-ZE9C-0011-R2a-SM-4WKGH
60-69 years, male
81.2
GTEX-ZV68-0011-R2a-SM-4YCDK
50-59 years, female
81.2
GTEX-14BIN-0011-R2a-SM-5S2RJ
50-59 years, female
80.8
GTEX-1F75B-0011-R2a-SM-ARL8I
50-59 years, male
80.4
GTEX-15ER7-0011-R2a-SM-6M46O
20-29 years, female
80.3
GTEX-NL4W-0011-R2a-SM-2I5GV
50-59 years, male
79.8
GTEX-ZDXO-0011-R2b-SM-4WKFG
60-69 years, male
79.6
GTEX-1CB4G-0011-R2a-SM-9QEGQ
60-69 years, male
77.6
GTEX-14BIM-0011-R2b-SM-69LQ6
60-69 years, female
76.9
GTEX-1I1GS-0011-R2b-SM-CMKHG
60-69 years, male
76.6
GTEX-13SLW-0011-R2b-SM-5O9C6
70-79 years, male
76.4
GTEX-147GR-0011-R2b-SM-5S2RQ
60-69 years, male
76.1
GTEX-1EKGG-0011-R2a-SM-CE6R8
60-69 years, male
75.9
GTEX-1445S-0011-R2b-SM-5PNUH
60-69 years, male
75.6
GTEX-1LVA9-0011-R2a-SM-EZ6MJ
50-59 years, male
75.4
GTEX-1E1VI-0011-R2a-SM-9QEGS
50-59 years, male
75.3
GTEX-1GTWX-0011-R2b-SM-ADEH5
60-69 years, male
74.8
GTEX-1GZ2Q-0011-R2b-SM-9OSWO
40-49 years, male
74.8
GTEX-18464-0011-R2a-SM-731AL
50-59 years, male
74.7
GTEX-13OW8-0011-R2a-SM-5L3G2
60-69 years, male
74.5
GTEX-1C6VR-0011-R2a-SM-7RHGZ
60-69 years, male
74.1
GTEX-13NYB-0011-R2a-SM-5MR3C
40-49 years, male
73.7
GTEX-ZAB4-0011-R2a-SM-4RGNP
40-49 years, male
73.6
GTEX-XMD1-0011-R2B-SM-4AT5N
60-69 years, male
73.2
GTEX-13O3Q-0011-R2b-SM-5KM3K
50-59 years, male
73.1
GTEX-13X6K-0011-R2b-SM-5P9K3
60-69 years, female
72.9
GTEX-1GMR8-0011-R2a-SM-CE6RD
50-59 years, female
72.8
GTEX-1IL2U-0011-R2a-SM-ARU6V
60-69 years, male
72.7
GTEX-11GSP-0011-R2b-SM-9QEGE
60-69 years, female
72.5
GTEX-1LVAO-0011-R2a-SM-EYYX1
60-69 years, male
72.4
GTEX-Z93S-0011-R2a-SM-4RGNG
50-59 years, male
72.2
GTEX-1H1ZS-0011-R2b-SM-CL54Q
70-79 years, male
72.2
GTEX-13QJC-0011-R2b-SM-5PNUN
60-69 years, female
71.9
GTEX-OXRO-0011-R2A-SM-3NB1W
60-69 years, female
71.6
GTEX-P44G-0011-R2A-SM-2XCD2
30-39 years, male
71.1
GTEX-1IGQW-0011-R2b-SM-D4P26
60-69 years, male
70.8
GTEX-1B933-0011-R2b-SM-7IGNM
50-59 years, female
70.7
GTEX-RU72-0011-R2A-SM-2TF6O
50-59 years, female
70.5
GTEX-1H3VE-0011-R2a-SM-CE6SA
40-49 years, male
70.5
GTEX-13OW6-0011-R2a-SM-5L3HG
50-59 years, male
70.4
GTEX-NPJ8-0011-R2a-SM-2TC6M
40-49 years, male
70.3
GTEX-11PRG-0011-R2a-SM-69LQ5
50-59 years, male
70.2
GTEX-12ZZX-0011-R2a-SM-5EGLG
40-49 years, female
69.9
GTEX-N7MS-0011-R2a-SM-2HML6
60-69 years, male
69.6
GTEX-15DYW-0011-R2b-SM-7KUKY
60-69 years, female
69.5
GTEX-1313W-0011-R2a-SM-5EGLF
50-59 years, female
69.4
GTEX-1I1CD-0011-R2a-SM-CM2T3
60-69 years, female
69.0
GTEX-11WQC-0011-R2a-SM-DO927
60-69 years, male
68.9
GTEX-1HB9E-0011-R2b-SM-A96RW
50-59 years, male
68.9
GTEX-14ASI-0011-R2b-SM-5YY9H
60-69 years, male
68.3
GTEX-14PJO-0011-R2a-SM-5ZZVF
60-69 years, male
68.2
GTEX-Q2AG-0011-R2A-SM-2HMIT
40-49 years, female
67.7
GTEX-1EU9M-0011-R2b-SM-9QEH7
60-69 years, male
67.5
GTEX-13PDP-0011-R2b-SM-5O9DH
60-69 years, male
67.3
GTEX-1IY9M-0011-R2a-SM-D4P29
60-69 years, male
67.2
GTEX-1J8Q2-0011-R2b-SM-EAZ2X
60-69 years, male
67.2
GTEX-15CHQ-0011-R2b-SM-6AJAD
60-69 years, male
66.9
GTEX-11GS4-0011-R2a-SM-DO942
60-69 years, male
66.8
GTEX-1LSNL-0011-R2a-SM-EZ6MK
50-59 years, male
66.8
GTEX-17EVP-0011-R2a-SM-7LG4W
40-49 years, male
66.7
GTEX-1J1OQ-0011-R2b-SM-ARU88
40-49 years, female
66.7
GTEX-S7SE-0011-R2A-SM-2XCDC
50-59 years, male
66.6
GTEX-13N2G-0011-R2a-SM-5MR4Q
60-69 years, male
66.3
GTEX-13NYS-0011-R2b-SM-5MR4G
60-69 years, male
66.3
GTEX-1HSMO-0011-R2a-SM-CL553
60-69 years, male
66.0
GTEX-1F48J-0011-R2a-SM-CL535
50-59 years, female
65.6
GTEX-1HR98-0011-R2a-SM-ARL7A
60-69 years, male
65.6
GTEX-1F6I4-0011-R2a-SM-CL536
60-69 years, male
64.7
GTEX-13O3O-0011-R2b-SM-5P9H1
60-69 years, female
64.5
GTEX-1H23P-0011-R2a-SM-CKZP3
60-69 years, male
64.4
GTEX-11EMC-0011-R2b-SM-DO114
60-69 years, female
64.2
GTEX-1GN73-0011-R2a-SM-CJI2V
60-69 years, male
64.2
GTEX-N7MT-0011-R2a-SM-2I3GI
60-69 years, female
64.1
GTEX-YJ89-0011-R2b-SM-4RGLT
60-69 years, male
64.0
GTEX-1F6IF-0011-R2b-SM-9QEHB
60-69 years, male
63.9
GTEX-1H1DG-0011-R2a-SM-ADEIQ
70-79 years, male
63.9
GTEX-11GSO-0011-R2a-SM-57WDF
60-69 years, male
63.8
GTEX-1399T-0011-R2b-SM-5DUXM
60-69 years, male
63.7
GTEX-13RTJ-0011-R2a-SM-5PNW9
60-69 years, male
63.7
GTEX-1GN2E-0011-R2a-SM-9WG7D
60-69 years, male
63.2
GTEX-13CF2-0011-R2a-SM-5L3DC
60-69 years, male
62.7
GTEX-1HFI6-0011-R2a-SM-CMKH5
40-49 years, male
62.7
GTEX-145LS-0011-R2a-SM-5PNZI
60-69 years, female
62.4
GTEX-1HT8W-0011-R2a-SM-CMKH9
30-39 years, male
62.2
GTEX-1H3O1-0011-R2b-SM-CKZOT
60-69 years, male
61.9
GTEX-1LH75-0011-R2b-SM-EYYWQ
50-59 years, female
61.6
GTEX-13G51-0011-R2b-SM-5LZXS
60-69 years, male
60.5
GTEX-13OVJ-0011-R2b-SM-5L3GP
50-59 years, female
60.4
GTEX-12WSF-0011-R2a-SM-5DUVU
70-79 years, male
60.3
GTEX-WHSE-0011-R2A-SM-3P5ZL
20-29 years, male
60.2
GTEX-12WSH-0011-R2a-SM-5GU68
50-59 years, male
60.1
GTEX-13FXS-0011-R2b-SM-5K7XX
50-59 years, male
59.0
GTEX-1IKJJ-0011-R2b-SM-ARZLJ
60-69 years, male
58.9
GTEX-132Q8-0011-R2b-SM-5EQ5Z
60-69 years, male
58.1
GTEX-16Z82-0011-R2b-SM-79OK9
60-69 years, male
58.1
GTEX-T5JC-0011-R2A-SM-32PLZ
20-29 years, male
58.1
GTEX-PWO3-0011-R2A-SM-2S1OX
60-69 years, female
58.0
GTEX-13SLX-0011-R2b-SM-5S2VP
50-59 years, female
57.7
GTEX-15DCD-0011-R2b-SM-6LPIE
70-79 years, female
57.5
GTEX-131XH-0011-R2b-SM-5DUVY
50-59 years, male
57.2
GTEX-14C5O-0011-R2a-SM-5ZZV2
60-69 years, male
57.1
GTEX-1B996-0011-R2a-SM-7IGON
60-69 years, male
57.1
GTEX-T6MN-0011-R2A-SM-32QOW
50-59 years, male
56.5
GTEX-1JMQK-0011-R2a-SM-EYYXQ
60-69 years, male
56.3
GTEX-11UD1-0011-R2b-SM-5BC6O
40-49 years, female
56.2
GTEX-XLM4-0011-R2B-SM-4AT5Z
60-69 years, male
56.2
GTEX-139TS-0011-R2b-SM-5J1MX
60-69 years, male
55.3
GTEX-YFC4-0011-R2a-SM-4V6DZ
40-49 years, female
55.1
GTEX-X4XX-0011-R2A-SM-3P623
60-69 years, male
54.2
GTEX-14JG1-0011-R2a-SM-5ZZVE
40-49 years, male
53.9
GTEX-1B8SG-0011-R2b-SM-79OOT
50-59 years, male
53.8
GTEX-11ZTS-0011-R2b-SM-5BC75
60-69 years, female
53.3
GTEX-OHPN-0011-R2A-SM-2I5FB
60-69 years, female
53.2
GTEX-1I1GV-0011-R2a-SM-ARZLF
60-69 years, male
53.1
GTEX-15RJE-0011-R2b-SM-79OMP
40-49 years, male
51.9
GTEX-T2IS-0011-R2A-SM-32QPF
20-29 years, female
51.7
GTEX-1A3MX-0011-R2b-SM-7EWFL
60-69 years, male
50.7
GTEX-13X6I-0011-R2b-SM-5PNWQ
60-69 years, male
50.4
GTEX-14PN4-0011-R2a-SM-6EU2Y
50-59 years, male
50.2
GTEX-15EO6-0011-R2a-SM-6M46R
50-59 years, male
49.8
GTEX-11DZ1-0011-R2a-SM-DNZZM
50-59 years, male
49.0
GTEX-QMR6-0011-R2A-SM-32PKV
50-59 years, male
47.8
GTEX-R55E-0011-R2A-SM-EYYV9
20-29 years, male
47.0
GTEX-X585-0011-R2B-SM-46MVF
50-59 years, male
46.5
GTEX-1GN1U-0011-R2a-SM-CL53A
50-59 years, female
46.0
GTEX-11TUW-0011-R2b-SM-DO92T
60-69 years, male
43.6
GTEX-QDT8-0011-R2A-SM-32PKQ
30-39 years, female
43.5
GTEX-12WSA-0011-R2a-SM-57WDK
60-69 years, male
38.3
GTEX-UTHO-0011-R2A-SM-3GIKC
60-69 years, male
36.8
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MIDBRAIN - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
55.8
Mouse sample
Sample description
nTPM
Midbrain nTPM: 55.8
Samples: 4
Max nTPM: 59.0
Min nTPM: 51.7
Sample A
Male
53.6
Sample B
Male
51.7
Sample C
Female
59.0
Sample D
Female
58.7
MIDBRAIN - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.