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A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
81.5
nTPM
Monaco:
50.9
nTPM
Schmiedel:
376.3
TPM
T-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
81.5
HPA sample
nTPM
gdT-cell nTPM: 58.4
Samples: 6
Max nTPM: 93.8
Min nTPM: 24.3
P10809_1007
24.3
P10809_1022
64.9
P10809_1041
93.8
P10809_1060
61.8
P10809_1077
31.4
P10809_1098
73.9
MAIT T-cell nTPM: 51.3
Samples: 6
Max nTPM: 68.8
Min nTPM: 24.3
P10809_1006
24.3
P10809_1024
68.8
P10809_1043
59.1
P10809_1062
60.3
P10809_1083
32.1
P10809_1097
63.2
Memory CD4 T-cell nTPM: 49.3
Samples: 6
Max nTPM: 66.5
Min nTPM: 18.9
P10809_1014
18.9
P10809_1026
63.5
P10809_1045
58.4
P10809_1064
66.5
P10809_1086
29.3
P10809_1113
59.0
Memory CD8 T-cell nTPM: 61.2
Samples: 5
Max nTPM: 73.3
Min nTPM: 22.6
P10809_1012
22.6
P10809_1027
72.9
P10809_1046
73.3
P10809_1065
69.6
P10809_1111
67.7
Naive CD4 T-cell nTPM: 34.9
Samples: 6
Max nTPM: 60.9
Min nTPM: 14.8
P10809_1015
14.8
P10809_1030
44.8
P10809_1049
60.9
P10809_1068
31.3
P10809_1085
18.6
P10809_1112
39.2
Naive CD8 T-cell nTPM: 49.8
Samples: 6
Max nTPM: 72.8
Min nTPM: 18.3
P10809_1016
18.3
P10809_1031
71.0
P10809_1050
60.2
P10809_1069
72.8
P10809_1087
33.5
P10809_1110
42.8
T-reg nTPM: 81.4
Samples: 6
Max nTPM: 107.4
Min nTPM: 34.1
P10809_1018
34.1
P10809_1037
98.0
P10809_1056
105.5
P10809_1075
91.2
P10809_1094
52.4
P10809_1106
107.4
T-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
50.9
Monaco sample
nTPM
Central memory CD8 T-cell nTPM: 31.8
Samples: 4
Max nTPM: 86.9
Min nTPM: 4.0
RHH5202_R3573
4.0
RHH5230_R3602
15.6
RHH5259_R3631
20.8
RHH5288_R3660
86.9
Effector memory CD8 T-cell nTPM: 36.5
Samples: 4
Max nTPM: 55.8
Min nTPM: 24.2
RHH5203_R3574
30.4
RHH5231_R3603
55.8
RHH5260_R3632
24.2
RHH5289_R3661
35.4
MAIT T-cell nTPM: 33.3
Samples: 4
Max nTPM: 46.1
Min nTPM: 10.1
RHH5233_R3605
39.5
RHH5205_R3576
10.1
RHH5262_R3634
37.6
RHH5297_R3663
46.1
Memory CD4 T-cell TFH nTPM: 50.9
Samples: 4
Max nTPM: 87.2
Min nTPM: 25.5
RHH5300_R3666
87.2
RHH5236_R3608
58.2
RHH5265_R3637
32.7
RHH5208_R3579
25.5
Memory CD4 T-cell Th1 nTPM: 34.9
Samples: 4
Max nTPM: 62.8
Min nTPM: 20.6
RHH5210_R3581
20.6
RHH5302_R3668
62.8
RHH5238_R3610
29.3
RHH5267_R3639
26.7
Memory CD4 T-cell Th1/Th17 nTPM: 32.7
Samples: 4
Max nTPM: 65.3
Min nTPM: 5.5
RHH5303_R3669
65.3
RHH5211_R3582
29.1
RHH5239_R3611
5.5
RHH5268_R3640
31.0
Memory CD4 T-cell Th17 nTPM: 18.9
Samples: 4
Max nTPM: 29.9
Min nTPM: 11.7
RHH5304_R3670
29.9
RHH5212_R3583
13.1
RHH5240_R3612
11.7
RHH5269_R3641
20.9
Memory CD4 T-cell Th2 nTPM: 25.9
Samples: 4
Max nTPM: 44.0
Min nTPM: 4.4
RHH5305_R3671
44.0
RHH5213_R3584
17.2
RHH5241_R3613
37.9
RHH5270_R3642
4.4
Naive CD4 T-cell nTPM: 26.4
Samples: 4
Max nTPM: 35.2
Min nTPM: 16.3
RHH5306_R3672
35.2
RHH5214_R3585
31.3
RHH5242_R3614
22.7
RHH5271_R3643
16.3
Naive CD8 T-cell nTPM: 16.6
Samples: 4
Max nTPM: 35.9
Min nTPM: 0.0
RHH5201_R3572
0.0
RHH5229_R3601
6.4
RHH5258_R3630
35.9
RHH5287_R3659
23.9
Non-Vd2 gdTCR nTPM: 38.2
Samples: 4
Max nTPM: 75.3
Min nTPM: 8.7
RHH5235_R3607
8.7
RHH5264_R3636
48.6
RHH5207_R3578
20.2
RHH5299_R3665
75.3
T-reg nTPM: 30.9
Samples: 4
Max nTPM: 61.1
Min nTPM: 4.1
RHH5301_R3667
61.1
RHH5237_R3609
48.7
RHH5266_R3638
9.6
RHH5209_R3580
4.1
Terminal effector memory CD4 T-cell nTPM: 33.8
Samples: 2
Max nTPM: 51.9
Min nTPM: 15.7
RHH5243_R3615
15.7
RHH5272_R3644
51.9
Terminal effector memory CD8 T-cell nTPM: 43.7
Samples: 4
Max nTPM: 72.7
Min nTPM: 26.0
RHH5232_R3604
36.3
RHH5204_R3575
39.8
RHH5261_R3633
26.0
RHH5296_R3662
72.7
Vd2 gdTCR nTPM: 34.0
Samples: 4
Max nTPM: 57.4
Min nTPM: 21.8
RHH5234_R3606
28.7
RHH5206_R3577
28.1
RHH5263_R3635
21.8
RHH5298_R3664
57.4
T-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
The Human Protein Atlas project is funded
