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A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
0.3
nTPM
Monaco:
12.6
nTPM
Schmiedel:
52.2
TPM
T-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
0.3
HPA sample
nTPM
gdT-cell nTPM: 0.2
Samples: 6
Max nTPM: 0.5
Min nTPM: 0.0
P10809_1007
0.0
P10809_1022
0.2
P10809_1041
0.1
P10809_1060
0.5
P10809_1077
0.1
P10809_1098
0.2
MAIT T-cell nTPM: 0.2
Samples: 6
Max nTPM: 0.5
Min nTPM: 0.0
P10809_1006
0.1
P10809_1024
0.5
P10809_1043
0.1
P10809_1062
0.0
P10809_1083
0.0
P10809_1097
0.2
Memory CD4 T-cell nTPM: 0.1
Samples: 6
Max nTPM: 0.1
Min nTPM: 0.0
P10809_1014
0.1
P10809_1026
0.0
P10809_1045
0.0
P10809_1064
0.1
P10809_1086
0.0
P10809_1113
0.1
Memory CD8 T-cell nTPM: 0.1
Samples: 5
Max nTPM: 0.3
Min nTPM: 0.0
P10809_1012
0.1
P10809_1027
0.1
P10809_1046
0.3
P10809_1065
0.0
P10809_1111
0.2
Naive CD4 T-cell nTPM: 0.3
Samples: 6
Max nTPM: 0.6
Min nTPM: 0.1
P10809_1015
0.3
P10809_1030
0.1
P10809_1049
0.6
P10809_1068
0.4
P10809_1085
0.1
P10809_1112
0.3
Naive CD8 T-cell nTPM: 0.2
Samples: 6
Max nTPM: 0.6
Min nTPM: 0.0
P10809_1016
0.4
P10809_1031
0.1
P10809_1050
0.1
P10809_1069
0.0
P10809_1087
0.0
P10809_1110
0.6
T-reg nTPM: 0.1
Samples: 6
Max nTPM: 0.4
Min nTPM: 0.0
P10809_1018
0.2
P10809_1037
0.4
P10809_1056
0.0
P10809_1075
0.0
P10809_1094
0.0
P10809_1106
0.1
T-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
12.6
Monaco sample
nTPM
Central memory CD8 T-cell nTPM: 8.7
Samples: 4
Max nTPM: 11.1
Min nTPM: 5.6
RHH5202_R3573
9.3
RHH5230_R3602
8.9
RHH5259_R3631
11.1
RHH5288_R3660
5.6
Effector memory CD8 T-cell nTPM: 8.1
Samples: 4
Max nTPM: 12.5
Min nTPM: 4.9
RHH5203_R3574
12.5
RHH5231_R3603
4.9
RHH5260_R3632
7.5
RHH5289_R3661
7.5
MAIT T-cell nTPM: 7.3
Samples: 4
Max nTPM: 9.5
Min nTPM: 4.7
RHH5233_R3605
9.5
RHH5205_R3576
6.1
RHH5262_R3634
8.9
RHH5297_R3663
4.7
Memory CD4 T-cell TFH nTPM: 8.7
Samples: 4
Max nTPM: 12.4
Min nTPM: 4.7
RHH5300_R3666
4.7
RHH5236_R3608
5.5
RHH5265_R3637
12.2
RHH5208_R3579
12.4
Memory CD4 T-cell Th1 nTPM: 11.2
Samples: 4
Max nTPM: 13.2
Min nTPM: 6.8
RHH5210_R3581
13.2
RHH5302_R3668
6.8
RHH5238_R3610
12.8
RHH5267_R3639
12.1
Memory CD4 T-cell Th1/Th17 nTPM: 11.0
Samples: 4
Max nTPM: 14.2
Min nTPM: 4.0
RHH5303_R3669
4.0
RHH5211_R3582
14.2
RHH5239_R3611
14.1
RHH5268_R3640
11.7
Memory CD4 T-cell Th17 nTPM: 7.0
Samples: 4
Max nTPM: 8.7
Min nTPM: 5.8
RHH5304_R3670
6.3
RHH5212_R3583
8.7
RHH5240_R3612
5.8
RHH5269_R3641
7.2
Memory CD4 T-cell Th2 nTPM: 7.5
Samples: 4
Max nTPM: 9.3
Min nTPM: 4.8
RHH5305_R3671
7.1
RHH5213_R3584
9.3
RHH5241_R3613
4.8
RHH5270_R3642
8.7
Naive CD4 T-cell nTPM: 12.6
Samples: 4
Max nTPM: 13.5
Min nTPM: 12.1
RHH5306_R3672
13.5
RHH5214_R3585
12.1
RHH5242_R3614
12.1
RHH5271_R3643
12.7
Naive CD8 T-cell nTPM: 8.9
Samples: 4
Max nTPM: 12.0
Min nTPM: 4.2
RHH5201_R3572
4.2
RHH5229_R3601
12.0
RHH5258_R3630
8.0
RHH5287_R3659
11.2
Non-Vd2 gdTCR nTPM: 9.6
Samples: 4
Max nTPM: 14.2
Min nTPM: 3.6
RHH5235_R3607
14.2
RHH5264_R3636
3.6
RHH5207_R3578
9.0
RHH5299_R3665
11.6
T-reg nTPM: 8.9
Samples: 4
Max nTPM: 11.1
Min nTPM: 6.6
RHH5301_R3667
6.6
RHH5237_R3609
8.4
RHH5266_R3638
9.6
RHH5209_R3580
11.1
Terminal effector memory CD4 T-cell nTPM: 8.5
Samples: 2
Max nTPM: 10.5
Min nTPM: 6.4
RHH5243_R3615
10.5
RHH5272_R3644
6.4
Terminal effector memory CD8 T-cell nTPM: 6.6
Samples: 4
Max nTPM: 9.3
Min nTPM: 3.2
RHH5232_R3604
6.7
RHH5204_R3575
7.3
RHH5261_R3633
9.3
RHH5296_R3662
3.2
Vd2 gdTCR nTPM: 7.4
Samples: 4
Max nTPM: 8.7
Min nTPM: 6.8
RHH5234_R3606
8.7
RHH5206_R3577
7.0
RHH5263_R3635
6.8
RHH5298_R3664
7.1
T-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
The Human Protein Atlas project is funded
