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  • MT-CYB
TISSUE PRIMARY DATA URINARY BLADDER Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
NASOPHARYNX ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Urinary bladder
Tissue proteome
Tissue methods
URINARY BLADDER - Expression summary
Protein expression
Urinary bladderi

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Urothelial cells: Medium
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:12099.8 nTPM
HPA:3926.4 nTPM
GTEx:12099.8 nTPM
URINARY BLADDER - SINGLE CELL RNA EXPRESSION
Explore single cell type data

URINARY BLADDER - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells. Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Ascending and descending describe two types of gradient, based on difference in staining intensity between enterocytes in crypts and apical enterocytes.

Ascending - the staining intensity is stronger in apical enterocytes (towards the lumen) compared to enterocytes in the crypts (gland based)

Descending - the staining is weaker in apical enterocytes compared to enterocytes in crypts

Antibody HPA068400Antibody CAB032215
Urothelial cells HighMedium


URINARY BLADDER - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.

Average nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

3926.4
overview
Male, age 74
Urinary bladder sample 264
nTPM: 3245.4
Cell types%
Urothelial cells:
5

Smooth muscle cells:
60

Fibroblasts:
20

Endothelial cells:
10

Other cell types:
5

overview
Male, age 80
Urinary bladder sample 265
nTPM: 2916.2
Cell types%
Urothelial cells:
10

Smooth muscle cells:
45

Fibroblasts:
15

Endothelial cells:
10

Other cell types:
20

N/A
Female, age 0.1
Urinary bladder sample 1597
nTPM: 5429.3
N/A
Female, age 0.1
Urinary bladder sample 1598
nTPM: 4114.6

URINARY BLADDER - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

12099.8
GTEx sample id Sample description nTPM
Bladder
Average nTPM: 12099.8
Samples: 77

Max nTPM: 19918.2
Min nTPM: 4395.5
Std nTPM: 3496.9
Median nTPM: 11914.7
GTEX-RNOR-2126-SM-EXURR 50-59 years, female 19918.2
GTEX-R45C-2426-SM-HL11G 60-69 years, female 19653.0
GTEX-T6MN-2226-SM-EVYAM 50-59 years, male 19356.2
GTEX-PW2O-1026-SM-GPRWA 20-29 years, male 18018.7
GTEX-T2IS-2526-SM-GRR23 20-29 years, female 17710.7
GTEX-P44H-2226-SM-E9U4P 40-49 years, male 17300.6
GTEX-QEG4-2126-SM-GQ1CE 30-39 years, male 17288.2
GTEX-PWCY-1126-SM-H7OGX 20-29 years, female 17256.9
GTEX-RWSA-2126-SM-H7OG7 40-49 years, male 16720.8
GTEX-QV31-0926-SM-GQ1C6 30-39 years, male 16434.9
GTEX-R55C-1226-SM-GOQY7 40-49 years, male 16402.0
GTEX-P4PP-1926-SM-HAUZM 30-39 years, female 16108.2
GTEX-PLZ6-1026-SM-GQ1C8 30-39 years, male 15961.9
GTEX-QCQG-0826-SM-GPI8H 50-59 years, female 15851.5
GTEX-S33H-1926-SM-EYYVH 30-39 years, male 15704.1
GTEX-U3ZM-0826-SM-4DXU6 40-49 years, male 15089.9
GTEX-R55G-1326-SM-HAUYU 40-49 years, female 14814.3
GTEX-OHPK-1926-SM-H7OF2 50-59 years, female 14713.6
GTEX-PLZ5-1326-SM-GQ1C2 50-59 years, male 14299.4
GTEX-TKQ2-0526-SM-GRR15 50-59 years, male 14289.8
GTEX-OXRK-1926-SM-GRR1N 50-59 years, female 14174.0
GTEX-P4QS-1926-SM-GQ1BY 60-69 years, male 14157.0
GTEX-T6MO-0926-SM-GPRWN 40-49 years, female 13985.3
GTEX-QXCU-2226-SM-GPI87 50-59 years, male 13882.0
GTEX-OIZI-1926-SM-H7OGY 40-49 years, male 13837.3
GTEX-SE5C-1026-SM-4BRUG 40-49 years, female 13711.6
GTEX-OHPM-1926-SM-H7OG1 50-59 years, male 13537.0
GTEX-QEL4-1826-SM-EZ6KU 50-59 years, male 13453.9
GTEX-OIZH-1926-SM-GPRXO 50-59 years, male 13429.2
GTEX-T5JW-1026-SM-EZ6LR 20-29 years, female 13103.2
GTEX-S3XE-1226-SM-4AD4L 50-59 years, male 13038.7
GTEX-RN64-2426-SM-EZ6L2 50-59 years, male 12985.9
GTEX-S4P3-0826-SM-H7OF3 50-59 years, female 12923.8
GTEX-T5JC-1126-SM-GPIA1 20-29 years, male 12638.8
GTEX-P78B-2126-SM-GQ1C3 40-49 years, female 12632.8
GTEX-RWS6-1426-SM-GPRWQ 60-69 years, female 12580.8
GTEX-QDVJ-1526-SM-GPI84 50-59 years, male 12566.8
GTEX-S95S-0626-SM-EZ6L8 60-69 years, male 12131.2
GTEX-QV44-1426-SM-GPI8D 50-59 years, male 11914.7
GTEX-QDVN-1426-SM-GPRWL 50-59 years, male 11826.0
GTEX-S32W-1126-SM-4AD5V 50-59 years, female 11666.7
GTEX-QMRM-1326-SM-HAUYS 50-59 years, male 11473.5
GTEX-S7SF-1126-SM-GQ1CH 20-29 years, female 11140.7
GTEX-U3ZH-0826-SM-H6Q7I 30-39 years, male 11035.8
GTEX-P4PQ-1926-SM-GRR14 60-69 years, male 10991.1
GTEX-OOBK-1926-SM-HAUZL 40-49 years, male 10887.7
GTEX-S4UY-0926-SM-4AD6O 40-49 years, female 10765.7
GTEX-REY6-2026-SM-GPRYL 60-69 years, male 10523.0
GTEX-U3ZN-1226-SM-4DXUD 30-39 years, female 10362.3
GTEX-PX3G-1926-SM-GQ1ED 20-29 years, female 10327.6
GTEX-Q2AI-1026-SM-GRR3I 40-49 years, male 10189.0
GTEX-P4QT-1926-SM-HAUYQ 50-59 years, female 10138.0
GTEX-OOBJ-1926-SM-GRR1P 60-69 years, male 9909.9
GTEX-T8EM-1726-SM-GPRWO 40-49 years, male 9838.9
GTEX-OHPL-1926-SM-HAV18 60-69 years, female 9810.4
GTEX-QLQW-0826-SM-H7OG2 30-39 years, male 9667.7
GTEX-OIZF-1926-SM-7PBZS 60-69 years, male 9500.8
GTEX-SUCS-1226-SM-GPI9A 70-79 years, male 9454.3
GTEX-TMMY-1526-SM-4DXST 40-49 years, female 9400.9
GTEX-N7MS-2126-SM-GRR2X 60-69 years, male 9364.1
GTEX-RM2N-1026-SM-GOQY8 50-59 years, male 9245.2
GTEX-S4Q7-0926-SM-4AD5D 20-29 years, male 9158.7
GTEX-U4B1-1226-SM-4DXT7 40-49 years, male 8805.4
GTEX-RUSQ-1326-SM-GQ1EA 50-59 years, male 8772.7
GTEX-Q734-1226-SM-GRR21 40-49 years, female 8710.5
GTEX-R53T-1426-SM-H7OG3 50-59 years, female 8620.9
GTEX-QDT8-2826-SM-GOQYY 30-39 years, female 8147.4
GTEX-SNMC-0826-SM-4DM66 20-29 years, male 8087.8
GTEX-O5YT-1926-SM-H6Q82 20-29 years, male 7927.3
GTEX-QLQ7-1226-SM-GOQYE 60-69 years, male 7738.1
GTEX-PWN1-1926-SM-HAUZN 40-49 years, female 7534.8
GTEX-SNOS-0526-SM-4DM54 40-49 years, male 7389.0
GTEX-Q2AH-1326-SM-GPRWF 40-49 years, male 7058.2
GTEX-POMQ-0926-SM-H6Q6H 20-29 years, female 7024.7
GTEX-QEG5-2326-SM-GRR2Z 20-29 years, male 6621.2
GTEX-NPJ8-1126-SM-GNTAI 40-49 years, male 4598.0
GTEX-N7MT-1826-SM-GQ1C9 60-69 years, female 4395.5
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