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TISSUE PRIMARY DATA RETINA Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
NASOPHARYNX ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Tissue proteome
Eye
Retina
Tissue methods
RETINA - Expression summary
Protein expression
Retinai

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Ganglion cells : Not detected
Inner nuclear layer: Not detected
Inner plexiform layer: Not detected
Limiting membrane: Not detected
Nerve fiber layer: Not detected
Outer plexiform layer: Not detected
Photoreceptor cells: High
Pigment epithelial cells: Not detected
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:328.7 nTPM
GTEx:328.7 nTPM
FANTOM5:498.7 Scaled Tags Per Million
EYE - SINGLE CELL RNA EXPRESSION
Explore single cell type data

RETINA - Extended tissue profilei

For selected proteins extended tissue profiling is performed in addition to standard tissue microarrays. The section below contains results from the extended profiling.

, antibody HPA078826
Pigment epithelial cells Not detected
Photoreceptor cells High
Limiting membrane Not detected
Outer plexiform layer Not detected
Inner nuclear layer Not detected
Inner plexiform layer Not detected
Ganglion cells Not detected
Nerve fiber layer Not detected

RETINA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

328.7
GTEx sample id Sample description nTPM
Retina
Average nTPM: 328.7
Samples: 105

Max nTPM: 531.7
Min nTPM: 168.4
Std nTPM: 74.5
Median nTPM:
6_1 73 years, female 531.7
172_1 72 years, female 503.9
218_1 71 years, female 475.6
379_1 60 years, male 473.5
352_1 62 years, male 452.8
386_1 76 years, male 449.7
375_1 74 years, female 438.7
229_1 69 years, female 435.6
163_1 78 years, male 434.3
354_1 81 years, female 431.5
319_1 81 years, male 427.6
350_1 84 years, female 416.0
425_1 59 years, female 411.4
177_1 74 years, male 411.1
349_1 83 years, male 406.8
447_1 81 years, male 403.9
355_1 70 years, female 403.2
335_1 73 years, female 401.3
468_1 89 years, male 400.1
321_1 62 years, female 396.0
115_1 83 years, male 391.1
347_1 72 years, male 390.2
286_1 68 years, female 389.0
376_1 75 years, female 388.3
142_1 61 years, female 387.7
389_1 86 years, female 385.0
316_1 62 years, male 384.6
396_1 62 years, male 381.8
356_1 87 years, female 380.3
406_1 79 years, male 378.0
324_1 76 years, male 377.7
99_1 64 years, male 375.3
480_1 63 years, male 375.1
503_1 68 years, male 373.4
404_1 82 years, female 370.0
266_1 85 years, male 364.3
153_1 70 years, female 364.1
237_1 82 years, male 362.1
318_1 68 years, male 355.0
394_1 75 years, female 353.7
526_1 61 years, male 353.0
9_1 66 years, female 351.3
117_1 61 years, male 350.7
405_1 91 years, male 348.0
246_1 77 years, male 347.9
32_1 67 years, male 346.7
243_1 75 years, male 345.2
265_1 87 years, male 339.3
348_1 84 years, male 336.9
126_1 63 years, male 331.2
217_1 76 years, male 330.1
351_1 91 years, male 324.4
173_1 67 years, male 323.6
414_1 84 years, female 322.7
499_1 55 years, female 322.5
377_1 82 years, female 319.0
162_1 79 years, female 318.2
415_1 77 years, female 314.4
313_1 79 years, female 313.1
264_1 73 years, female 305.0
189_1 76 years, male 304.4
353_1 82 years, female 304.3
517_1 88 years, male 304.1
317_1 60 years, male 301.5
145_1 84 years, male 299.3
81_1 67 years, male 294.4
452_1 88 years, female 294.4
254_1 77 years, female 294.3
120_1 70 years, female 291.9
35_1 74 years, female 291.6
251_1 78 years, male 288.4
42_1 85 years, male 287.3
518_1 75 years, female 286.6
137_1 83 years, male 284.6
292_1 71 years, male 282.2
4_1 88 years, female 281.2
384_1 83 years, male 279.9
43_1 64 years, female 277.6
466_1 57 years, female 277.6
291_1 76 years, male 276.4
322_1 76 years, male 273.3
311_1 78 years, male 270.0
18_1 88 years, male 266.3
109_1 81 years, female 265.3
320_1 89 years, female 265.0
490_1 67 years, female 262.1
139_1 64 years, female 258.0
506_1 65 years, male 249.8
315_1 62 years, female 249.2
2_1 77 years, female 246.5
17_1 71 years, male 242.5
295_1 61 years, female 242.2
119_1 70 years, female 240.4
307_1 66 years, female 238.1
288_1 66 years, female 227.0
149_1 88 years, male 226.6
413_1 59 years, female 225.9
314_1 67 years, male 217.3
89_1 63 years, male 215.1
293_1 68 years, female 214.6
41_1 94 years, female 211.4
308_1 70 years, female 197.6
491_1 89 years, female 184.7
495_1 57 years, female 182.3
501_1 88 years, male 168.4
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RETINA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

498.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Retina
Scaled Tags Per Million: 498.7
FF:10030-101E3 24-65 years, mixed 498.7

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