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A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
49.1
nTPM
Monaco:
64.8
nTPM
Schmiedel:
48.8
TPM
T-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
49.1
HPA sample
nTPM
gdT-cell nTPM: 32.1
Samples: 6
Max nTPM: 51.1
Min nTPM: 24.5
P10809_1007
24.5
P10809_1022
27.2
P10809_1041
29.0
P10809_1060
28.2
P10809_1077
32.3
P10809_1098
51.1
MAIT T-cell nTPM: 29.1
Samples: 6
Max nTPM: 36.9
Min nTPM: 19.3
P10809_1006
26.8
P10809_1024
26.2
P10809_1043
19.3
P10809_1062
33.1
P10809_1083
32.3
P10809_1097
36.9
Memory CD4 T-cell nTPM: 34.7
Samples: 6
Max nTPM: 46.7
Min nTPM: 25.0
P10809_1014
32.8
P10809_1026
27.8
P10809_1045
25.0
P10809_1064
37.1
P10809_1086
46.7
P10809_1113
38.6
Memory CD8 T-cell nTPM: 29.7
Samples: 5
Max nTPM: 45.0
Min nTPM: 19.1
P10809_1012
21.5
P10809_1027
19.1
P10809_1046
21.9
P10809_1065
41.2
P10809_1111
45.0
Naive CD4 T-cell nTPM: 33.3
Samples: 6
Max nTPM: 41.4
Min nTPM: 24.1
P10809_1015
37.3
P10809_1030
28.1
P10809_1049
24.1
P10809_1068
33.0
P10809_1085
41.4
P10809_1112
36.0
Naive CD8 T-cell nTPM: 31.3
Samples: 6
Max nTPM: 41.1
Min nTPM: 21.8
P10809_1016
25.5
P10809_1031
32.1
P10809_1050
21.8
P10809_1069
34.8
P10809_1087
41.1
P10809_1110
32.5
T-reg nTPM: 49.1
Samples: 6
Max nTPM: 56.1
Min nTPM: 40.3
P10809_1018
40.3
P10809_1037
51.1
P10809_1056
56.1
P10809_1075
52.2
P10809_1094
41.3
P10809_1106
53.8
T-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
64.8
Monaco sample
nTPM
Central memory CD8 T-cell nTPM: 48.3
Samples: 4
Max nTPM: 73.5
Min nTPM: 34.6
RHH5202_R3573
73.5
RHH5230_R3602
34.6
RHH5259_R3631
44.6
RHH5288_R3660
40.4
Effector memory CD8 T-cell nTPM: 57.2
Samples: 4
Max nTPM: 67.5
Min nTPM: 37.0
RHH5203_R3574
65.7
RHH5231_R3603
58.4
RHH5260_R3632
37.0
RHH5289_R3661
67.5
MAIT T-cell nTPM: 42.1
Samples: 4
Max nTPM: 57.0
Min nTPM: 29.6
RHH5233_R3605
40.7
RHH5205_R3576
41.1
RHH5262_R3634
29.6
RHH5297_R3663
57.0
Memory CD4 T-cell TFH nTPM: 64.8
Samples: 4
Max nTPM: 79.8
Min nTPM: 49.4
RHH5300_R3666
49.4
RHH5236_R3608
64.0
RHH5265_R3637
65.8
RHH5208_R3579
79.8
Memory CD4 T-cell Th1 nTPM: 44.0
Samples: 4
Max nTPM: 53.5
Min nTPM: 27.1
RHH5210_R3581
48.8
RHH5302_R3668
53.5
RHH5238_R3610
27.1
RHH5267_R3639
46.4
Memory CD4 T-cell Th1/Th17 nTPM: 48.1
Samples: 4
Max nTPM: 59.0
Min nTPM: 39.0
RHH5303_R3669
59.0
RHH5211_R3582
54.0
RHH5239_R3611
40.5
RHH5268_R3640
39.0
Memory CD4 T-cell Th17 nTPM: 48.6
Samples: 4
Max nTPM: 73.3
Min nTPM: 37.7
RHH5304_R3670
40.2
RHH5212_R3583
73.3
RHH5240_R3612
37.7
RHH5269_R3641
43.1
Memory CD4 T-cell Th2 nTPM: 54.0
Samples: 4
Max nTPM: 68.8
Min nTPM: 43.6
RHH5305_R3671
68.8
RHH5213_R3584
55.1
RHH5241_R3613
43.6
RHH5270_R3642
48.6
Naive CD4 T-cell nTPM: 58.2
Samples: 4
Max nTPM: 83.0
Min nTPM: 27.4
RHH5306_R3672
77.1
RHH5214_R3585
83.0
RHH5242_R3614
27.4
RHH5271_R3643
45.4
Naive CD8 T-cell nTPM: 49.5
Samples: 4
Max nTPM: 63.5
Min nTPM: 25.8
RHH5201_R3572
59.0
RHH5229_R3601
25.8
RHH5258_R3630
49.5
RHH5287_R3659
63.5
Non-Vd2 gdTCR nTPM: 54.8
Samples: 4
Max nTPM: 64.8
Min nTPM: 43.1
RHH5235_R3607
53.9
RHH5264_R3636
64.8
RHH5207_R3578
57.3
RHH5299_R3665
43.1
T-reg nTPM: 64.0
Samples: 4
Max nTPM: 81.6
Min nTPM: 54.1
RHH5301_R3667
59.3
RHH5237_R3609
81.6
RHH5266_R3638
60.8
RHH5209_R3580
54.1
Terminal effector memory CD4 T-cell nTPM: 58.5
Samples: 2
Max nTPM: 83.0
Min nTPM: 33.9
RHH5243_R3615
33.9
RHH5272_R3644
83.0
Terminal effector memory CD8 T-cell nTPM: 44.1
Samples: 4
Max nTPM: 59.0
Min nTPM: 31.6
RHH5232_R3604
31.6
RHH5204_R3575
43.8
RHH5261_R3633
41.8
RHH5296_R3662
59.0
Vd2 gdTCR nTPM: 48.1
Samples: 4
Max nTPM: 68.4
Min nTPM: 32.2
RHH5234_R3606
47.9
RHH5206_R3577
68.4
RHH5263_R3635
32.2
RHH5298_R3664
43.7
T-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
The Human Protein Atlas project is funded
