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TISSUE PRIMARY DATA VAGINA Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
NASOPHARYNX ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Vagina
Tissue proteome
Vagina
Tissue methods
VAGINA - Expression summary
Protein expression
Vaginai

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Squamous epithelial cells: Medium
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:521.2 nTPM
GTEx:521.2 nTPM
FANTOM5:768.8 Scaled Tags Per Million

VAGINA - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells. Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Ascending and descending describe two types of gradient, based on difference in staining intensity between enterocytes in crypts and apical enterocytes.

Ascending - the staining intensity is stronger in apical enterocytes (towards the lumen) compared to enterocytes in the crypts (gland based)

Descending - the staining is weaker in apical enterocytes compared to enterocytes in crypts

Antibody HPA004426Antibody CAB004647
Squamous epithelial cells MediumHigh



VAGINA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

521.2
GTEx sample id Sample description nTPM
Vagina
Average nTPM: 521.2
Samples: 170

Max nTPM: 1582.2
Min nTPM: 204.3
Std nTPM: 168.2
Median nTPM: 504.1
GTEX-OXRK-2026-SM-GOQY5 50-59 years, female 1582.2
GTEX-12WSD-2926-SM-5LZUH 60-69 years, female 991.2
GTEX-PLZ4-2726-SM-3P61A 50-59 years, female 964.6
GTEX-1I4MK-1726-SM-ARL7O 50-59 years, female 880.5
GTEX-11EM3-1826-SM-5A5KO 20-29 years, female 865.5
GTEX-RU1J-1426-SM-46MUV 20-29 years, female 830.4
GTEX-ZYVF-0326-SM-5GIES 50-59 years, female 825.4
GTEX-RWS6-1726-SM-47JXP 60-69 years, female 819.4
GTEX-W5WG-1026-SM-4LMIF 50-59 years, female 787.0
GTEX-ZAK1-2426-SM-EXOHM 50-59 years, female 773.0
GTEX-12WSJ-1326-SM-5GCOB 40-49 years, female 770.5
GTEX-O5YV-2226-SM-HM8V7 60-69 years, female 767.4
GTEX-1LNCM-1026-SM-E9U5D 50-59 years, female 748.0
GTEX-RTLS-2126-SM-GPRWH 60-69 years, female 741.1
GTEX-UJHI-1326-SM-4IHJO 50-59 years, female 735.9
GTEX-1GN1U-2426-SM-9KNTU 50-59 years, female 707.0
GTEX-TSE9-2526-SM-4DXUS 60-69 years, female 704.6
GTEX-13W3W-2326-SM-5LU4Y 60-69 years, female 693.4
GTEX-1QPFJ-1626-SM-DTX7X 30-39 years, female 687.6
GTEX-YFC4-2926-SM-5IFJ8 40-49 years, female 685.5
GTEX-WI4N-2626-SM-GPI8F 40-49 years, female 684.7
GTEX-13FTY-2026-SM-GIN9K 40-49 years, female 682.9
GTEX-15DYW-2926-SM-6PANA 60-69 years, female 680.7
GTEX-WEY5-0826-SM-4LMIH 40-49 years, female 678.7
GTEX-13N11-1526-SM-5L3FL 50-59 years, female 676.8
GTEX-14H4A-2426-SM-664OQ 40-49 years, female 674.9
GTEX-1LGRB-2126-SM-COH48 50-59 years, female 673.4
GTEX-P78B-2226-SM-3P5ZZ 40-49 years, female 671.4
GTEX-13U4I-2026-SM-5LU3L 40-49 years, female 669.7
GTEX-131XG-2126-SM-5DUXG 50-59 years, female 667.7
GTEX-1IE54-2626-SM-CMKFY 40-49 years, female 655.3
GTEX-TMMY-1926-SM-4DXUU 40-49 years, female 654.9
GTEX-12ZZX-1926-SM-5EGKC 40-49 years, female 647.1
GTEX-13OVI-0926-SM-5J1MI 60-69 years, female 647.1
GTEX-147F3-1526-SM-5MR7L 50-59 years, female 646.6
GTEX-PWN1-2526-SM-48TDS 40-49 years, female 646.4
GTEX-WYVS-1426-SM-4ONCV 40-49 years, female 644.7
GTEX-1C475-0526-SM-793AC 40-49 years, female 625.6
GTEX-14BMU-1926-SM-5S2QC 20-29 years, female 619.1
GTEX-QCQG-1226-SM-48U23 50-59 years, female 618.4
GTEX-14JG6-0726-SM-69LQH 30-39 years, female 615.4
GTEX-11DXX-1726-SM-5H11T 60-69 years, female 613.9
GTEX-1MCC2-1126-SM-EVYD6 30-39 years, female 611.6
GTEX-U3ZN-0926-SM-4DXTU 30-39 years, female 610.3
GTEX-13PVR-1426-SM-5S2PW 60-69 years, female 609.5
GTEX-XUZC-1226-SM-4BRVJ 30-39 years, female 606.0
GTEX-S4P3-1126-SM-4AD52 50-59 years, female 603.0
GTEX-17JCI-2526-SM-7DHLB 60-69 years, female 598.0
GTEX-ZGAY-2226-SM-4YCCX 40-49 years, female 597.4
GTEX-TML8-1126-SM-4DXSS 40-49 years, female 593.3
GTEX-1QCLZ-2226-SM-DTX7R 60-69 years, female 587.2
GTEX-13QBU-1726-SM-5IJFQ 40-49 years, female 575.0
GTEX-13D11-1326-SM-5IJFY 50-59 years, female 573.8
GTEX-1EWIQ-2326-SM-7IGNF 70-79 years, female 569.6
GTEX-145LS-2526-SM-5TDC9 60-69 years, female 569.1
GTEX-11GSP-2226-SM-5HL5Q 60-69 years, female 563.1
GTEX-146FR-2426-SM-5NQAU 60-69 years, female 560.2
GTEX-ZQG8-1126-SM-51MRL 60-69 years, female 559.5
GTEX-1LGOU-1126-SM-D3LAI 20-29 years, female 551.8
GTEX-113JC-1926-SM-5N9GE 50-59 years, female 550.8
GTEX-ZVT3-2726-SM-5GU5X 60-69 years, female 550.3
GTEX-T6MO-1226-SM-4DM5S 40-49 years, female 544.8
GTEX-PX3G-2526-SM-48TZV 20-29 years, female 543.8
GTEX-15UF6-2126-SM-6M46Z 70-79 years, female 539.5
GTEX-1GN1W-1526-SM-7P8TG 50-59 years, female 537.8
GTEX-14PJM-2926-SM-69LOE 50-59 years, female 536.9
GTEX-1S5ZU-2626-SM-E9TII 20-29 years, female 536.9
GTEX-11P81-2126-SM-5HL6N 30-39 years, female 536.1
GTEX-1F48J-2526-SM-7P8TU 50-59 years, female 534.1
GTEX-R45C-2226-SM-GQ1EF 60-69 years, female 532.4
GTEX-1HCU6-2326-SM-ACKXP 60-69 years, female 531.2
GTEX-131YS-2426-SM-5J2OD 60-69 years, female 529.4
GTEX-T2IS-1926-SM-4DM74 20-29 years, female 528.7
GTEX-14AS3-1726-SM-5RQJV 40-49 years, female 525.6
GTEX-16NGA-1626-SM-72D6M 40-49 years, female 524.9
GTEX-W5X1-2226-SM-GRR1G 40-49 years, female 524.4
GTEX-WRHU-2926-SM-4MVNQ 50-59 years, female 522.0
GTEX-PWCY-1726-SM-48TD3 20-29 years, female 519.3
GTEX-X8HC-2826-SM-46MWJ 50-59 years, female 519.2
GTEX-13QIC-1826-SM-5J1MY 60-69 years, female 517.4
GTEX-YJ8O-1226-SM-5P9JE 40-49 years, female 517.4
GTEX-XYKS-2826-SM-H7OG8 60-69 years, female 514.0
GTEX-17F9Y-2326-SM-7DUFP 70-79 years, female 507.5
GTEX-15SB6-1426-SM-7KUEM 50-59 years, female 505.9
GTEX-1PIEJ-1926-SM-EVYB7 20-29 years, female 504.6
GTEX-11VI4-0726-SM-5GU5B 40-49 years, female 503.6
GTEX-16MT8-2426-SM-GQ1DK 60-69 years, female 502.2
GTEX-ZP4G-0826-SM-4WWF3 20-29 years, female 501.6
GTEX-15ER7-2526-SM-7KUFW 20-29 years, female 499.3
GTEX-14DAQ-2326-SM-5S2QX 60-69 years, female 491.7
GTEX-1LH75-1726-SM-DHXKZ 50-59 years, female 490.5
GTEX-XV7Q-1626-SM-4BRWC 40-49 years, female 488.2
GTEX-1R9JW-1426-SM-DTX9K 30-39 years, female 485.6
GTEX-QDT8-2526-SM-48TYX 30-39 years, female 483.2
GTEX-18D9A-1026-SM-7KFRU 30-39 years, female 483.1
GTEX-145ME-1426-SM-5RQJS 40-49 years, female 482.3
GTEX-XUW1-0326-SM-4BOOR 50-59 years, female 481.8
GTEX-14PJ6-1626-SM-6872D 60-69 years, female 479.3
GTEX-ZV6S-1326-SM-59HJA 40-49 years, female 475.2
GTEX-1MCYP-1326-SM-EV7AD 20-29 years, female 470.8
GTEX-ZYY3-2626-SM-5N9DH 60-69 years, female 469.0
GTEX-OHPL-2526-SM-3MJGT 60-69 years, female 467.8
GTEX-1AMFI-1526-SM-73KVY 50-59 years, female 466.4
GTEX-146FH-2626-SM-5Q5E1 50-59 years, female 464.1
GTEX-132AR-1626-SM-5EGHP 50-59 years, female 462.3
GTEX-X15G-1926-SM-4PQZQ 50-59 years, female 461.2
GTEX-ZVT2-0626-SM-5GICR 50-59 years, female 457.4
GTEX-Y3IK-2226-SM-4YCD4 50-59 years, female 456.9
GTEX-1QP28-1426-SM-EVR4E 50-59 years, female 456.1
GTEX-1I1GT-1226-SM-B2LVK 60-69 years, female 454.0
GTEX-1MA7W-1226-SM-HL9SB 20-29 years, female 453.5
GTEX-14PKU-1326-SM-6871B 40-49 years, female 453.4
GTEX-1LVAM-1926-SM-E6CIM 50-59 years, female 449.4
GTEX-WYBS-2826-SM-GOQYI 60-69 years, female 444.7
GTEX-14A5I-2726-SM-5MR84 50-59 years, female 444.5
GTEX-P4PP-2526-SM-3P61P 30-39 years, female 443.8
GTEX-S4UY-1026-SM-4AD53 40-49 years, female 443.5
GTEX-ZXES-0626-SM-5E45P 30-39 years, female 434.6
GTEX-ZLWG-1126-SM-4WWFQ 50-59 years, female 433.2
GTEX-11XUK-1326-SM-5EQM4 40-49 years, female 432.8
GTEX-14PN3-1626-SM-6AJAV 60-69 years, female 432.6
GTEX-OHPK-2526-SM-3MJH9 50-59 years, female 428.6
GTEX-1NUQO-1826-SM-E6CQU 20-29 years, female 426.6
GTEX-18A7A-2826-SM-7LT8J 50-59 years, female 423.9
GTEX-Q734-1426-SM-DTXFX 40-49 years, female 420.6
GTEX-1ICG6-1626-SM-ARL81 70-79 years, female 420.2
GTEX-1IDJU-1026-SM-AHZ2U 60-69 years, female 415.1
GTEX-1HCUA-1026-SM-A9SMI 50-59 years, female 414.7
GTEX-SE5C-1126-SM-4BRWZ 40-49 years, female 414.3
GTEX-QVJO-2526-SM-CYPRA 60-69 years, female 411.4
GTEX-OHPN-2426-SM-E9TI5 60-69 years, female 405.9
GTEX-1399U-1526-SM-5J2N7 50-59 years, female 405.3
GTEX-ZC5H-2226-SM-4WAWS 40-49 years, female 398.6
GTEX-1JN1M-2326-SM-ARZNG 60-69 years, female 395.0
GTEX-183WM-2126-SM-7LG4I 70-79 years, female 393.3
GTEX-13PL7-2726-SM-5L3GB 60-69 years, female 391.1
GTEX-16NPV-2526-SM-6M483 50-59 years, female 390.8
GTEX-S341-1226-SM-4AD5S 40-49 years, female 384.8
GTEX-1HBPH-2926-SM-9WPNX 40-49 years, female 382.7
GTEX-1F5PL-1826-SM-7P8PP 40-49 years, female 379.2
GTEX-ZZPU-2226-SM-5EGIV 50-59 years, female 377.2
GTEX-139D8-2626-SM-GJ3QN 30-39 years, female 371.3
GTEX-RNOR-2526-SM-F21KT 50-59 years, female 370.0
GTEX-1GMR8-2526-SM-7RHI9 50-59 years, female 369.6
GTEX-1HFI7-1126-SM-A96S5 50-59 years, female 363.6
GTEX-15SDE-1726-SM-6LPJS 50-59 years, female 360.4
GTEX-1LKK1-1826-SM-GNIPA 50-59 years, female 359.7
GTEX-15SHU-2926-SM-7KUKT 40-49 years, female 352.5
GTEX-ZE7O-2426-SM-57WD7 50-59 years, female 350.5
GTEX-S7SF-1426-SM-4AT5A 20-29 years, female 346.9
GTEX-ZTPG-2226-SM-57WF9 20-29 years, female 345.2
GTEX-NPJ7-2526-SM-EV79A 60-69 years, female 342.9
GTEX-1JN76-1526-SM-CNPPF 20-29 years, female 333.6
GTEX-1LVAN-1626-SM-CNPQ7 50-59 years, female 329.2
GTEX-ZVZQ-2726-SM-GPRY1 60-69 years, female 327.1
GTEX-N7MT-1926-SM-3LK5N 60-69 years, female 324.1
GTEX-1CAMS-2326-SM-793CR 40-49 years, female 322.9
GTEX-11EMC-1926-SM-5A5JU 60-69 years, female 317.3
GTEX-1399S-2326-SM-5K7YV 30-39 years, female 309.0
GTEX-1JMQL-2326-SM-CNNPV 50-59 years, female 298.8
GTEX-ZAJG-2926-SM-5HL8P 50-59 years, female 294.5
GTEX-11I78-2026-SM-5987C 50-59 years, female 290.7
GTEX-SN8G-2626-SM-EXUQT 50-59 years, female 284.9
GTEX-1HBPM-2726-SM-9WYUA 60-69 years, female 279.5
GTEX-1A8FM-2426-SM-7IGPE 50-59 years, female 277.5
GTEX-1J8EW-2526-SM-CKZO2 60-69 years, female 253.7
GTEX-1J1OQ-1826-SM-CL53R 40-49 years, female 252.4
GTEX-1GF9U-1926-SM-7P8TZ 40-49 years, female 243.5
GTEX-1117F-2526-SM-5GZY6 60-69 years, female 226.0
GTEX-11TTK-2726-SM-5GU58 60-69 years, female 204.3
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VAGINA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

768.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Vagina
Scaled Tags Per Million: 768.8
FF:10204-103F6 68 years, female 768.8

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