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TISSUE PRIMARY DATA SMALL INTESTINE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
NASOPHARYNX ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Small intestine
Tissue proteome
Intestine
Tissue methods
SMALL INTESTINE - Expression summary
Protein expression
Small intestinei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glandular cells: High
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:459.7 nTPM
HPA:459.7 nTPM
GTEx:414.0 nTPM
FANTOM5:680.9 Scaled Tags Per Million
SMALL INTESTINE - SINGLE CELL RNA EXPRESSION
Explore single cell type data

SMALL INTESTINE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells. Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Ascending and descending describe two types of gradient, based on difference in staining intensity between enterocytes in crypts and apical enterocytes.

Ascending - the staining intensity is stronger in apical enterocytes (towards the lumen) compared to enterocytes in the crypts (gland based)

Descending - the staining is weaker in apical enterocytes compared to enterocytes in crypts

Antibody HPA004426Antibody CAB004647
Glandular cells HighHigh





SMALL INTESTINE - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.

Average nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

459.7
overview
Male, age 65
Small intestine sample 232
nTPM: 426.7
Cell types%
Glandular cells:
55

Smooth muscle cells:
5

Other cell types:
40

overview
Male, age 39
Small intestine sample 233
nTPM: 457.7
Cell types%
Glandular cells:
40

Smooth muscle cells:
5

Other cell types:
55

overview
Male, age 68
Small intestine sample 234
nTPM: 497.5
Cell types%
Glandular cells:
30

Smooth muscle cells:
15

Other cell types:
55

N/A
Male, age 85
Small intestine sample 235
nTPM: 457.1

SMALL INTESTINE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

414.0
GTEx sample id Sample description nTPM
Small Intestine - Terminal Ileum
Average nTPM: 414.0
Samples: 207

Max nTPM: 736.1
Min nTPM: 198.8
Std nTPM: 96.9
Median nTPM: 405.9
GTEX-ZPU1-1826-SM-GNTB3 40-49 years, male 736.1
GTEX-XPT6-1026-SM-GOQYN 20-29 years, male 703.4
GTEX-1R9JW-1926-SM-EVR4J 30-39 years, female 685.4
GTEX-1C64O-2526-SM-79ONO 60-69 years, male 665.4
GTEX-1QW4Y-1226-SM-EWRMY 30-39 years, male 642.7
GTEX-W5X1-1926-SM-GOQYX 40-49 years, female 634.6
GTEX-1S82Z-1826-SM-E9TIK 30-39 years, female 617.1
GTEX-ZQG8-2526-SM-57WEQ 60-69 years, female 612.4
GTEX-YB5K-1126-SM-H6Q6O 40-49 years, female 607.6
GTEX-117YX-0326-SM-5GICL 50-59 years, male 604.3
GTEX-1PFEY-1326-SM-HK791 30-39 years, male 600.4
GTEX-15EU6-1826-SM-7PC1W 50-59 years, male 588.6
GTEX-XMK1-1826-SM-4B66F 40-49 years, male 575.0
GTEX-111CU-1326-SM-5NQ8L 50-59 years, male 566.7
GTEX-WFON-1526-SM-4LVMP 40-49 years, male 564.8
GTEX-ZF2S-1726-SM-57WFT 50-59 years, female 563.5
GTEX-YJ8A-2126-SM-GQ1C7 20-29 years, male 557.9
GTEX-1C475-1426-SM-793CH 40-49 years, female 553.5
GTEX-ZPIC-2326-SM-57WDW 40-49 years, female 551.7
GTEX-ZF29-1626-SM-4WKFJ 60-69 years, female 551.4
GTEX-1QCLZ-2126-SM-EWRNC 60-69 years, female 549.2
GTEX-14PJ3-1326-SM-664O7 50-59 years, male 546.2
GTEX-1R7EV-1226-SM-DTX82 40-49 years, male 541.3
GTEX-WY7C-1826-SM-4ONCE 50-59 years, male 530.2
GTEX-14PJ6-1726-SM-6AJBN 60-69 years, female 528.0
GTEX-1J8Q3-2526-SM-CNNQ4 60-69 years, male 526.6
GTEX-1B8KZ-1126-SM-7IGLX 50-59 years, male 519.9
GTEX-1OKEX-1126-SM-DTXEB 60-69 years, male 519.6
GTEX-17KNJ-1626-SM-718AL 50-59 years, male 513.4
GTEX-Y3I4-1326-SM-4TT8Z 50-59 years, male 510.8
GTEX-WFG8-1626-SM-4LVMB 20-29 years, male 510.5
GTEX-1192X-2526-SM-59868 50-59 years, male 506.8
GTEX-1I1GT-1826-SM-ARZLW 60-69 years, female 506.3
GTEX-ZQUD-0926-SM-57WE3 30-39 years, male 505.5
GTEX-YEC4-1726-SM-4W21E 40-49 years, male 503.4
GTEX-14PK6-1626-SM-6871I 70-79 years, female 502.7
GTEX-111YS-1426-SM-5GID8 60-69 years, male 499.0
GTEX-1RAZA-1826-SM-DTXA2 20-29 years, male 497.9
GTEX-178AV-1226-SM-GOR11 40-49 years, male 492.6
GTEX-ZAB5-1526-SM-5HL9P 50-59 years, male 492.6
GTEX-1R9K5-2026-SM-E6CPS 50-59 years, male 489.7
GTEX-14XAO-1926-SM-6ETZO 60-69 years, female 489.3
GTEX-XPVG-1726-SM-4B65W 50-59 years, male 488.2
GTEX-ZPCL-1726-SM-57WEO 60-69 years, female 486.5
GTEX-Y111-2226-SM-4SOJB 50-59 years, male 485.9
GTEX-1BAJH-2526-SM-7IGOT 70-79 years, male 483.9
GTEX-Y3IK-1726-SM-4YCCR 50-59 years, female 480.1
GTEX-Z9EW-0926-SM-5CVMM 40-49 years, male 476.0
GTEX-13NYB-1826-SM-5J1N3 40-49 years, male 475.8
GTEX-WEY5-1526-SM-4LMJF 40-49 years, female 474.1
GTEX-13OVI-1926-SM-5IJCG 60-69 years, female 473.9
GTEX-Y114-1426-SM-4TT6W 50-59 years, female 473.8
GTEX-11LCK-1926-SM-5A5KE 30-39 years, male 473.5
GTEX-1MUQO-2426-SM-EAZ5A 60-69 years, male 471.8
GTEX-1JMQK-2426-SM-CXZJU 60-69 years, male 468.8
GTEX-1R9PM-1626-SM-DPRY9 20-29 years, male 467.0
GTEX-1OJC3-1626-SM-E9U65 20-29 years, male 466.4
GTEX-WFG7-1726-SM-4LVME 20-29 years, male 463.8
GTEX-X15G-1426-SM-4PQZK 50-59 years, female 462.9
GTEX-13111-1426-SM-5DUW3 50-59 years, male 462.5
GTEX-1R7EU-1326-SM-E6CQ6 60-69 years, male 461.5
GTEX-ZVT2-2126-SM-5NQ93 50-59 years, female 459.7
GTEX-WHPG-1826-SM-GNTAH 50-59 years, male 458.6
GTEX-14DAR-1426-SM-5RQIR 50-59 years, male 453.5
GTEX-13QBU-1926-SM-5IJEW 40-49 years, female 453.4
GTEX-13D11-0726-SM-5LZZB 50-59 years, female 452.9
GTEX-1MA7W-0726-SM-HLJQU 20-29 years, female 452.0
GTEX-14PJN-0826-SM-686ZL 30-39 years, male 451.4
GTEX-ZTPG-2626-SM-57WFX 20-29 years, female 451.2
GTEX-YFCO-1326-SM-664NV 40-49 years, male 444.6
GTEX-ZTSS-0926-SM-59865 40-49 years, male 444.6
GTEX-14BMU-1426-SM-5TDE5 20-29 years, female 441.1
GTEX-1S831-1526-SM-HLJQS 20-29 years, male 440.8
GTEX-1GMR2-1026-SM-7MKHJ 50-59 years, male 437.5
GTEX-ZTX8-0526-SM-59HLD 20-29 years, male 435.8
GTEX-1R9K4-2326-SM-E6CRB 60-69 years, male 433.8
GTEX-1NSGN-2126-SM-DPRYN 50-59 years, male 432.8
GTEX-ZG7Y-1926-SM-DNZZ5 50-59 years, male 432.6
GTEX-ZYFG-2026-SM-5E43Y 60-69 years, female 431.1
GTEX-VJYA-0926-SM-4KL1N 60-69 years, male 430.4
GTEX-ZZ64-0526-SM-5GZXM 20-29 years, male 430.1
GTEX-17MFQ-1026-SM-7KFSZ 20-29 years, male 429.5
GTEX-13FTW-2026-SM-5IJE2 40-49 years, male 429.2
GTEX-WYJK-1526-SM-4ONCW 50-59 years, male 428.4
GTEX-13O21-1026-SM-5IJDU 50-59 years, male 425.5
GTEX-1399S-2026-SM-5KM4B 30-39 years, female 424.2
GTEX-1H1DE-1426-SM-9JGHV 20-29 years, male 422.5
GTEX-ZA64-1226-SM-5HL7B 20-29 years, male 421.0
GTEX-1PIEJ-1526-SM-E6CP8 20-29 years, female 419.0
GTEX-1QP28-1726-SM-E6CRK 50-59 years, female 419.0
GTEX-1QP2A-2426-SM-EXOJA 50-59 years, male 418.4
GTEX-1CAMS-2426-SM-7DHMV 40-49 years, female 417.6
GTEX-13PL7-2626-SM-5IFH4 60-69 years, female 416.5
GTEX-18QFQ-1626-SM-72D7H 30-39 years, male 413.9
GTEX-12WSK-1526-SM-5CVNO 40-49 years, female 413.8
GTEX-XBED-1426-SM-4AT4G 60-69 years, male 410.2
GTEX-14C39-1826-SM-5ZZW4 40-49 years, male 410.1
GTEX-145ME-0926-SM-5O9AR 40-49 years, female 410.0
GTEX-1LH75-1926-SM-DIPGD 50-59 years, female 407.7
GTEX-1S5ZA-1326-SM-EV7BB 20-29 years, male 407.6
GTEX-13113-1226-SM-5EGHT 60-69 years, female 407.5
GTEX-1RAZR-1826-SM-E6CRE 40-49 years, male 407.2
GTEX-XXEK-1026-SM-4BRUW 50-59 years, male 406.2
GTEX-U8XE-2226-SM-HAUZQ 30-39 years, male 405.9
GTEX-16MTA-1526-SM-6LPJB 50-59 years, male 403.9
GTEX-16A39-1426-SM-6LLI6 30-39 years, female 403.6
GTEX-11P7K-1626-SM-5GU63 30-39 years, male 402.6
GTEX-WHSB-1026-SM-4M1XN 50-59 years, male 399.9
GTEX-Y5LM-1626-SM-4VDTB 40-49 years, female 399.8
GTEX-1HCUA-1726-SM-GA8Z2 50-59 years, female 399.4
GTEX-Y9LG-1626-SM-5IFHM 30-39 years, male 398.9
GTEX-1NHNU-2526-SM-HK79M 50-59 years, male 397.1
GTEX-ZLV1-1126-SM-4WWBW 60-69 years, female 396.7
GTEX-131XG-1726-SM-5LZUR 50-59 years, female 396.5
GTEX-X3Y1-1526-SM-H6Q6X 40-49 years, male 394.7
GTEX-13O61-1326-SM-5KM31 60-69 years, male 393.5
GTEX-1HBPN-1926-SM-GA91H 50-59 years, male 392.2
GTEX-1HSMQ-2226-SM-C1YRD 50-59 years, male 392.1
GTEX-WRHK-1026-SM-4MVOD 20-29 years, female 391.7
GTEX-1MGNQ-2326-SM-EV7BG 40-49 years, male 386.6
GTEX-1497J-1926-SM-5TDCC 60-69 years, male 385.5
GTEX-ZV7C-1426-SM-GNTB8 50-59 years, male 385.1
GTEX-13X6H-1826-SM-5O9D1 50-59 years, female 384.1
GTEX-ZDTT-1726-SM-5HL69 60-69 years, male 383.3
GTEX-14PKU-1626-SM-6871C 40-49 years, female 378.8
GTEX-ZVP2-1726-SM-5GU5P 50-59 years, male 378.2
GTEX-Y5V5-1826-SM-4VDS5 60-69 years, female 378.0
GTEX-11P82-0826-SM-5P9GU 20-29 years, male 376.8
GTEX-1AMFI-1926-SM-731F2 50-59 years, female 375.9
GTEX-14E6E-1626-SM-5RQI7 30-39 years, male 373.9
GTEX-1M5QR-2226-SM-HLJRV 40-49 years, male 373.8
GTEX-11NSD-1726-SM-5N9C3 20-29 years, male 371.7
GTEX-WFJO-0926-SM-4LVM2 30-39 years, male 371.5
GTEX-1MCYP-1626-SM-HLJQ5 20-29 years, female 370.8
GTEX-1QPFJ-2626-SM-DPRZU 30-39 years, female 370.3
GTEX-X4LF-1326-SM-HLJSD 50-59 years, male 367.1
GTEX-1122O-1326-SM-5H11F 60-69 years, female 366.8
GTEX-1AX8Z-2526-SM-731E3 60-69 years, male 365.7
GTEX-139T6-1026-SM-5IJGC 50-59 years, male 364.5
GTEX-ZXES-1526-SM-5NQ95 30-39 years, female 364.4
GTEX-139YR-2226-SM-5IFFW 50-59 years, male 363.8
GTEX-1IKOE-1926-SM-ARU7V 30-39 years, female 363.1
GTEX-13RTK-0826-SM-5Q5C6 20-29 years, male 361.8
GTEX-1HSGN-2126-SM-GA8ZB 40-49 years, female 360.4
GTEX-11EQ9-1326-SM-5985X 30-39 years, male 357.9
GTEX-WH7G-1626-SM-4LVMY 40-49 years, male 355.0
GTEX-ZVZP-1826-SM-5GZXB 50-59 years, male 354.9
GTEX-1LGOU-1426-SM-D3L8N 20-29 years, female 352.7
GTEX-ZP4G-1626-SM-57WGD 20-29 years, female 351.4
GTEX-13FH7-1226-SM-5IJFK 50-59 years, female 351.2
GTEX-145LT-1026-SM-5LU9O 40-49 years, male 351.0
GTEX-XAJ8-0526-SM-47JYK 40-49 years, male 350.5
GTEX-1GL5R-2026-SM-7MKHP 50-59 years, male 348.0
GTEX-YB5E-1526-SM-5IFIE 40-49 years, male 346.7
GTEX-ZT9X-1026-SM-HLJS2 40-49 years, male 343.8
GTEX-15G1A-1726-SM-6LPI4 30-39 years, male 342.0
GTEX-ZLWG-1626-SM-DNZZ1 50-59 years, female 341.2
GTEX-1CAMR-0826-SM-7MKFK 20-29 years, male 340.9
GTEX-1L5NE-1826-SM-EV79T 50-59 years, male 337.1
GTEX-1PDJ9-1826-SM-E9U66 20-29 years, male 336.3
GTEX-ZLFU-1526-SM-4WWBT 40-49 years, male 335.6
GTEX-1KXAM-2026-SM-DHXKI 60-69 years, male 334.8
GTEX-1H11D-2526-SM-9JGGU 40-49 years, male 333.6
GTEX-11DXX-1626-SM-5H11H 60-69 years, female 333.4
GTEX-14PKV-2026-SM-6AJ9A 20-29 years, female 331.4
GTEX-1RQED-2826-SM-HLJQK 60-69 years, male 330.0
GTEX-144GM-1026-SM-5O9AZ 20-29 years, male 329.5
GTEX-YF7O-1826-SM-5IFIU 50-59 years, male 328.5
GTEX-11VI4-1626-SM-5EQKO 40-49 years, female 326.8
GTEX-1J8QM-1026-SM-C1YQA 60-69 years, female 326.6
GTEX-12BJ1-1926-SM-5HL9Z 60-69 years, male 322.0
GTEX-1B8KE-1726-SM-7IGMN 50-59 years, male 321.6
GTEX-14PN3-2026-SM-68729 60-69 years, female 320.6
GTEX-15DZA-0826-SM-6AJBF 30-39 years, female 319.5
GTEX-XUZC-1426-SM-4BRV3 30-39 years, female 315.5
GTEX-183FY-1626-SM-793D8 20-29 years, male 314.7
GTEX-X5EB-1626-SM-4E3IV 40-49 years, male 313.7
GTEX-131XF-1326-SM-5GCMQ 60-69 years, male 311.4
GTEX-16AAH-1426-SM-7KFTR 50-59 years, male 311.4
GTEX-11I78-1126-SM-5A5K5 50-59 years, female 310.9
GTEX-1EMGI-2826-SM-7IGMR 60-69 years, male 309.4
GTEX-1HKZK-2226-SM-GA91V 40-49 years, male 307.7
GTEX-11XUK-1426-SM-5EQMG 40-49 years, female 306.9
GTEX-1F75I-2526-SM-9WPOZ 40-49 years, male 304.4
GTEX-1GMR3-2726-SM-7MKFB 40-49 years, male 303.4
GTEX-1K9T9-2726-SM-D4P3E 50-59 years, female 303.0
GTEX-ZC5H-2326-SM-4WAYT 40-49 years, female 300.1
GTEX-1JN76-1126-SM-C1YRL 20-29 years, female 298.2
GTEX-XGQ4-1326-SM-4GIDU 50-59 years, male 298.2
GTEX-1LBAC-1526-SM-CXZKU 20-29 years, male 295.9
GTEX-VUSG-1726-SM-4KKZL 50-59 years, male 295.2
GTEX-17HHE-1726-SM-79OKT 50-59 years, male 290.6
GTEX-11DXZ-1326-SM-5H11X 50-59 years, male 288.4
GTEX-1JK1U-1226-SM-CNNPN 60-69 years, male 286.7
GTEX-1RAZQ-2226-SM-DPRZR 30-39 years, male 286.5
GTEX-1399U-2126-SM-5IFEZ 50-59 years, female 285.2
GTEX-ZEX8-1826-SM-57WBH 50-59 years, male 283.9
GTEX-18A66-2526-SM-7KFTZ 60-69 years, male 275.1
GTEX-1399R-2026-SM-5K7WN 30-39 years, male 269.1
GTEX-148VJ-2226-SM-5NQ9M 70-79 years, male 255.3
GTEX-WQUQ-2426-SM-4MVNW 60-69 years, male 248.7
GTEX-11TUW-1926-SM-5BC58 60-69 years, male 246.3
GTEX-16NGA-1126-SM-7KFSY 40-49 years, female 245.7
GTEX-13CF3-1226-SM-5LZXN 60-69 years, female 241.6
GTEX-133LE-1426-SM-5IFH1 20-29 years, female 231.4
GTEX-1JJE9-2226-SM-CXZJM 70-79 years, male 217.6
GTEX-UPK5-2026-SM-4JBIM 40-49 years, male 198.8
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SMALL INTESTINE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

680.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Small intestine
Scaled Tags Per Million: 680.9
FF:10024-101D6 15,40,85 years, mixed 680.9

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