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A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
19.4
nTPM
Monaco:
47.1
nTPM
Schmiedel:
31.1
TPM
T-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
19.4
HPA sample
nTPM
gdT-cell nTPM: 16.2
Samples: 6
Max nTPM: 22.8
Min nTPM: 8.2
P10809_1007
12.1
P10809_1022
22.8
P10809_1041
8.2
P10809_1060
18.5
P10809_1077
14.8
P10809_1098
20.5
MAIT T-cell nTPM: 19.0
Samples: 6
Max nTPM: 27.7
Min nTPM: 13.9
P10809_1006
17.8
P10809_1024
27.7
P10809_1043
17.0
P10809_1062
15.3
P10809_1083
13.9
P10809_1097
22.4
Memory CD4 T-cell nTPM: 16.0
Samples: 6
Max nTPM: 22.4
Min nTPM: 11.9
P10809_1014
11.9
P10809_1026
15.7
P10809_1045
22.4
P10809_1064
13.1
P10809_1086
19.1
P10809_1113
13.9
Memory CD8 T-cell nTPM: 17.6
Samples: 5
Max nTPM: 19.2
Min nTPM: 15.4
P10809_1012
17.1
P10809_1027
18.9
P10809_1046
17.5
P10809_1065
15.4
P10809_1111
19.2
Naive CD4 T-cell nTPM: 19.4
Samples: 6
Max nTPM: 27.8
Min nTPM: 12.5
P10809_1015
15.3
P10809_1030
27.8
P10809_1049
26.4
P10809_1068
18.0
P10809_1085
12.5
P10809_1112
16.6
Naive CD8 T-cell nTPM: 16.0
Samples: 6
Max nTPM: 22.1
Min nTPM: 10.0
P10809_1016
16.6
P10809_1031
10.0
P10809_1050
14.4
P10809_1069
22.1
P10809_1087
16.7
P10809_1110
16.3
T-reg nTPM: 15.6
Samples: 6
Max nTPM: 23.4
Min nTPM: 4.4
P10809_1018
13.5
P10809_1037
23.4
P10809_1056
4.4
P10809_1075
16.5
P10809_1094
21.6
P10809_1106
14.3
T-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
47.1
Monaco sample
nTPM
Central memory CD8 T-cell nTPM: 43.0
Samples: 4
Max nTPM: 53.2
Min nTPM: 29.8
RHH5202_R3573
53.2
RHH5230_R3602
43.3
RHH5259_R3631
29.8
RHH5288_R3660
45.8
Effector memory CD8 T-cell nTPM: 38.8
Samples: 4
Max nTPM: 50.0
Min nTPM: 28.9
RHH5203_R3574
39.4
RHH5231_R3603
36.9
RHH5260_R3632
28.9
RHH5289_R3661
50.0
MAIT T-cell nTPM: 35.9
Samples: 4
Max nTPM: 46.1
Min nTPM: 25.3
RHH5233_R3605
46.1
RHH5205_R3576
25.3
RHH5262_R3634
33.7
RHH5297_R3663
38.6
Memory CD4 T-cell TFH nTPM: 34.0
Samples: 4
Max nTPM: 40.0
Min nTPM: 26.9
RHH5300_R3666
37.6
RHH5236_R3608
26.9
RHH5265_R3637
31.4
RHH5208_R3579
40.0
Memory CD4 T-cell Th1 nTPM: 32.7
Samples: 4
Max nTPM: 37.8
Min nTPM: 27.4
RHH5210_R3581
37.8
RHH5302_R3668
28.6
RHH5238_R3610
36.9
RHH5267_R3639
27.4
Memory CD4 T-cell Th1/Th17 nTPM: 27.6
Samples: 4
Max nTPM: 33.6
Min nTPM: 20.3
RHH5303_R3669
33.6
RHH5211_R3582
26.6
RHH5239_R3611
20.3
RHH5268_R3640
29.8
Memory CD4 T-cell Th17 nTPM: 32.2
Samples: 4
Max nTPM: 40.2
Min nTPM: 26.0
RHH5304_R3670
40.2
RHH5212_R3583
26.0
RHH5240_R3612
30.3
RHH5269_R3641
32.4
Memory CD4 T-cell Th2 nTPM: 28.2
Samples: 4
Max nTPM: 31.2
Min nTPM: 23.5
RHH5305_R3671
29.3
RHH5213_R3584
28.6
RHH5241_R3613
23.5
RHH5270_R3642
31.2
Naive CD4 T-cell nTPM: 37.7
Samples: 4
Max nTPM: 46.2
Min nTPM: 28.9
RHH5306_R3672
31.0
RHH5214_R3585
44.6
RHH5242_R3614
46.2
RHH5271_R3643
28.9
Naive CD8 T-cell nTPM: 35.7
Samples: 4
Max nTPM: 39.0
Min nTPM: 29.3
RHH5201_R3572
29.3
RHH5229_R3601
38.3
RHH5258_R3630
36.3
RHH5287_R3659
39.0
Non-Vd2 gdTCR nTPM: 43.9
Samples: 4
Max nTPM: 51.8
Min nTPM: 33.4
RHH5235_R3607
47.7
RHH5264_R3636
51.8
RHH5207_R3578
42.5
RHH5299_R3665
33.4
T-reg nTPM: 35.5
Samples: 4
Max nTPM: 40.4
Min nTPM: 30.6
RHH5301_R3667
30.6
RHH5237_R3609
38.7
RHH5266_R3638
32.3
RHH5209_R3580
40.4
Terminal effector memory CD4 T-cell nTPM: 47.2
Samples: 2
Max nTPM: 49.8
Min nTPM: 44.5
RHH5243_R3615
49.8
RHH5272_R3644
44.5
Terminal effector memory CD8 T-cell nTPM: 45.4
Samples: 4
Max nTPM: 64.3
Min nTPM: 35.0
RHH5232_R3604
64.3
RHH5204_R3575
35.0
RHH5261_R3633
44.4
RHH5296_R3662
37.8
Vd2 gdTCR nTPM: 39.4
Samples: 4
Max nTPM: 42.7
Min nTPM: 31.6
RHH5234_R3606
42.7
RHH5206_R3577
31.6
RHH5263_R3635
42.1
RHH5298_R3664
41.0
T-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
The Human Protein Atlas project is funded
