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TISSUE PRIMARY DATA VAGINA Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
NASOPHARYNX ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Vagina
Tissue proteome
Vagina
Tissue methods
VAGINA - Expression summary
Protein expression
Vaginai

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Squamous epithelial cells: Not detected
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:118.7 nTPM
GTEx:118.7 nTPM
FANTOM5:95.9 Scaled Tags Per Million

VAGINA - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells. Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Ascending and descending describe two types of gradient, based on difference in staining intensity between enterocytes in crypts and apical enterocytes.

Ascending - the staining intensity is stronger in apical enterocytes (towards the lumen) compared to enterocytes in the crypts (gland based)

Descending - the staining is weaker in apical enterocytes compared to enterocytes in crypts

Antibody HPA018794
Squamous epithelial cells Not detected

VAGINA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

118.7
GTEx sample id Sample description nTPM
Vagina
Average nTPM: 118.7
Samples: 170

Max nTPM: 548.9
Min nTPM: 7.6
Std nTPM: 102.4
Median nTPM: 95.3
GTEX-YFC4-2926-SM-5IFJ8 40-49 years, female 548.9
GTEX-1QPFJ-1626-SM-DTX7X 30-39 years, female 468.6
GTEX-WRHU-2926-SM-4MVNQ 50-59 years, female 459.7
GTEX-WEY5-0826-SM-4LMIH 40-49 years, female 429.6
GTEX-12WSJ-1326-SM-5GCOB 40-49 years, female 406.8
GTEX-1I4MK-1726-SM-ARL7O 50-59 years, female 378.3
GTEX-UJHI-1326-SM-4IHJO 50-59 years, female 377.2
GTEX-ZQG8-1126-SM-51MRL 60-69 years, female 363.7
GTEX-ZV6S-1326-SM-59HJA 40-49 years, female 345.6
GTEX-11EM3-1826-SM-5A5KO 20-29 years, female 340.3
GTEX-1HFI7-1126-SM-A96S5 50-59 years, female 332.2
GTEX-12WSD-2926-SM-5LZUH 60-69 years, female 329.0
GTEX-ZGAY-2226-SM-4YCCX 40-49 years, female 303.8
GTEX-RTLS-2126-SM-GPRWH 60-69 years, female 292.9
GTEX-13OVI-0926-SM-5J1MI 60-69 years, female 282.1
GTEX-P4PP-2526-SM-3P61P 30-39 years, female 277.1
GTEX-13N11-1526-SM-5L3FL 50-59 years, female 250.4
GTEX-11GSP-2226-SM-5HL5Q 60-69 years, female 250.2
GTEX-13W3W-2326-SM-5LU4Y 60-69 years, female 247.7
GTEX-1QCLZ-2226-SM-DTX7R 60-69 years, female 235.2
GTEX-RU1J-1426-SM-46MUV 20-29 years, female 232.7
GTEX-1I1GT-1226-SM-B2LVK 60-69 years, female 217.6
GTEX-W5WG-1026-SM-4LMIF 50-59 years, female 217.4
GTEX-OXRK-2026-SM-GOQY5 50-59 years, female 213.3
GTEX-145ME-1426-SM-5RQJS 40-49 years, female 208.7
GTEX-QCQG-1226-SM-48U23 50-59 years, female 207.4
GTEX-146FR-2426-SM-5NQAU 60-69 years, female 207.1
GTEX-QDT8-2526-SM-48TYX 30-39 years, female 206.2
GTEX-14PJM-2926-SM-69LOE 50-59 years, female 202.2
GTEX-13FTY-2026-SM-GIN9K 40-49 years, female 200.8
GTEX-XUZC-1226-SM-4BRVJ 30-39 years, female 187.9
GTEX-PX3G-2526-SM-48TZV 20-29 years, female 186.5
GTEX-13D11-1326-SM-5IJFY 50-59 years, female 185.7
GTEX-1PIEJ-1926-SM-EVYB7 20-29 years, female 174.3
GTEX-1LGRB-2126-SM-COH48 50-59 years, female 174.1
GTEX-ZYVF-0326-SM-5GIES 50-59 years, female 172.6
GTEX-ZAK1-2426-SM-EXOHM 50-59 years, female 170.4
GTEX-ZVT3-2726-SM-5GU5X 60-69 years, female 167.8
GTEX-12ZZX-1926-SM-5EGKC 40-49 years, female 166.2
GTEX-OHPN-2426-SM-E9TI5 60-69 years, female 162.6
GTEX-RWS6-1726-SM-47JXP 60-69 years, female 154.6
GTEX-1EWIQ-2326-SM-7IGNF 70-79 years, female 153.0
GTEX-WI4N-2626-SM-GPI8F 40-49 years, female 150.8
GTEX-14DAQ-2326-SM-5S2QX 60-69 years, female 149.5
GTEX-X8HC-2826-SM-46MWJ 50-59 years, female 147.2
GTEX-OHPL-2526-SM-3MJGT 60-69 years, female 146.5
GTEX-WYBS-2826-SM-GOQYI 60-69 years, female 146.4
GTEX-PWN1-2526-SM-48TDS 40-49 years, female 144.6
GTEX-13QIC-1826-SM-5J1MY 60-69 years, female 143.8
GTEX-1JN1M-2326-SM-ARZNG 60-69 years, female 143.5
GTEX-145LS-2526-SM-5TDC9 60-69 years, female 137.8
GTEX-XV7Q-1626-SM-4BRWC 40-49 years, female 134.2
GTEX-1GMR8-2526-SM-7RHI9 50-59 years, female 133.5
GTEX-14A5I-2726-SM-5MR84 50-59 years, female 129.2
GTEX-14JG6-0726-SM-69LQH 30-39 years, female 124.6
GTEX-XUW1-0326-SM-4BOOR 50-59 years, female 124.1
GTEX-ZP4G-0826-SM-4WWF3 20-29 years, female 122.2
GTEX-13U4I-2026-SM-5LU3L 40-49 years, female 121.7
GTEX-1IE54-2626-SM-CMKFY 40-49 years, female 118.0
GTEX-ZVZQ-2726-SM-GPRY1 60-69 years, female 117.4
GTEX-17JCI-2526-SM-7DHLB 60-69 years, female 116.7
GTEX-W5X1-2226-SM-GRR1G 40-49 years, female 116.3
GTEX-X15G-1926-SM-4PQZQ 50-59 years, female 116.2
GTEX-1F48J-2526-SM-7P8TU 50-59 years, female 115.9
GTEX-TMMY-1926-SM-4DXUU 40-49 years, female 115.6
GTEX-1MCC2-1126-SM-EVYD6 30-39 years, female 115.3
GTEX-13PVR-1426-SM-5S2PW 60-69 years, female 114.3
GTEX-13QBU-1726-SM-5IJFQ 40-49 years, female 113.5
GTEX-15DYW-2926-SM-6PANA 60-69 years, female 112.4
GTEX-16MT8-2426-SM-GQ1DK 60-69 years, female 111.9
GTEX-1NUQO-1826-SM-E6CQU 20-29 years, female 111.0
GTEX-O5YV-2226-SM-HM8V7 60-69 years, female 111.0
GTEX-1399U-1526-SM-5J2N7 50-59 years, female 107.6
GTEX-ZTPG-2226-SM-57WF9 20-29 years, female 105.6
GTEX-147F3-1526-SM-5MR7L 50-59 years, female 104.7
GTEX-1AMFI-1526-SM-73KVY 50-59 years, female 103.0
GTEX-131XG-2126-SM-5DUXG 50-59 years, female 102.4
GTEX-1ICG6-1626-SM-ARL81 70-79 years, female 101.3
GTEX-T2IS-1926-SM-4DM74 20-29 years, female 100.1
GTEX-131YS-2426-SM-5J2OD 60-69 years, female 99.7
GTEX-1HCUA-1026-SM-A9SMI 50-59 years, female 98.9
GTEX-18A7A-2826-SM-7LT8J 50-59 years, female 97.4
GTEX-1GN1U-2426-SM-9KNTU 50-59 years, female 96.0
GTEX-ZLWG-1126-SM-4WWFQ 50-59 years, female 95.8
GTEX-15UF6-2126-SM-6M46Z 70-79 years, female 95.7
GTEX-11VI4-0726-SM-5GU5B 40-49 years, female 94.9
GTEX-16NPV-2526-SM-6M483 50-59 years, female 90.5
GTEX-R45C-2226-SM-GQ1EF 60-69 years, female 90.5
GTEX-TSE9-2526-SM-4DXUS 60-69 years, female 90.4
GTEX-1S5ZU-2626-SM-E9TII 20-29 years, female 88.8
GTEX-ZYY3-2626-SM-5N9DH 60-69 years, female 81.1
GTEX-14PJ6-1626-SM-6872D 60-69 years, female 80.8
GTEX-183WM-2126-SM-7LG4I 70-79 years, female 80.4
GTEX-11DXX-1726-SM-5H11T 60-69 years, female 78.8
GTEX-1LNCM-1026-SM-E9U5D 50-59 years, female 78.5
GTEX-ZVT2-0626-SM-5GICR 50-59 years, female 77.2
GTEX-1GN1W-1526-SM-7P8TG 50-59 years, female 76.8
GTEX-1F5PL-1826-SM-7P8PP 40-49 years, female 74.8
GTEX-P78B-2226-SM-3P5ZZ 40-49 years, female 72.9
GTEX-S4UY-1026-SM-4AD53 40-49 years, female 72.7
GTEX-113JC-1926-SM-5N9GE 50-59 years, female 70.1
GTEX-NPJ7-2526-SM-EV79A 60-69 years, female 70.0
GTEX-1C475-0526-SM-793AC 40-49 years, female 68.1
GTEX-1R9JW-1426-SM-DTX9K 30-39 years, female 65.8
GTEX-15ER7-2526-SM-7KUFW 20-29 years, female 63.0
GTEX-WYVS-1426-SM-4ONCV 40-49 years, female 62.4
GTEX-1HCU6-2326-SM-ACKXP 60-69 years, female 60.8
GTEX-YJ8O-1226-SM-5P9JE 40-49 years, female 59.7
GTEX-1399S-2326-SM-5K7YV 30-39 years, female 59.4
GTEX-PLZ4-2726-SM-3P61A 50-59 years, female 57.5
GTEX-13PL7-2726-SM-5L3GB 60-69 years, female 57.0
GTEX-146FH-2626-SM-5Q5E1 50-59 years, female 57.0
GTEX-S4P3-1126-SM-4AD52 50-59 years, female 56.6
GTEX-ZE7O-2426-SM-57WD7 50-59 years, female 55.6
GTEX-1LKK1-1826-SM-GNIPA 50-59 years, female 54.5
GTEX-QVJO-2526-SM-CYPRA 60-69 years, female 53.6
GTEX-1QP28-1426-SM-EVR4E 50-59 years, female 53.1
GTEX-SN8G-2626-SM-EXUQT 50-59 years, female 53.0
GTEX-1CAMS-2326-SM-793CR 40-49 years, female 52.9
GTEX-XYKS-2826-SM-H7OG8 60-69 years, female 51.7
GTEX-1LVAM-1926-SM-E6CIM 50-59 years, female 51.0
GTEX-RNOR-2526-SM-F21KT 50-59 years, female 50.0
GTEX-11TTK-2726-SM-5GU58 60-69 years, female 48.7
GTEX-1117F-2526-SM-5GZY6 60-69 years, female 47.1
GTEX-U3ZN-0926-SM-4DXTU 30-39 years, female 46.7
GTEX-N7MT-1926-SM-3LK5N 60-69 years, female 46.5
GTEX-11EMC-1926-SM-5A5JU 60-69 years, female 46.3
GTEX-1JMQL-2326-SM-CNNPV 50-59 years, female 45.6
GTEX-14H4A-2426-SM-664OQ 40-49 years, female 45.4
GTEX-18D9A-1026-SM-7KFRU 30-39 years, female 45.2
GTEX-15SHU-2926-SM-7KUKT 40-49 years, female 44.9
GTEX-1A8FM-2426-SM-7IGPE 50-59 years, female 43.2
GTEX-1J8EW-2526-SM-CKZO2 60-69 years, female 40.9
GTEX-T6MO-1226-SM-4DM5S 40-49 years, female 40.8
GTEX-1HBPH-2926-SM-9WPNX 40-49 years, female 39.3
GTEX-1LH75-1726-SM-DHXKZ 50-59 years, female 38.9
GTEX-14BMU-1926-SM-5S2QC 20-29 years, female 38.1
GTEX-OHPK-2526-SM-3MJH9 50-59 years, female 37.9
GTEX-1JN76-1526-SM-CNPPF 20-29 years, female 36.5
GTEX-15SB6-1426-SM-7KUEM 50-59 years, female 35.2
GTEX-1HBPM-2726-SM-9WYUA 60-69 years, female 34.6
GTEX-139D8-2626-SM-GJ3QN 30-39 years, female 34.4
GTEX-11XUK-1326-SM-5EQM4 40-49 years, female 33.2
GTEX-1J1OQ-1826-SM-CL53R 40-49 years, female 31.6
GTEX-PWCY-1726-SM-48TD3 20-29 years, female 31.0
GTEX-TML8-1126-SM-4DXSS 40-49 years, female 30.6
GTEX-15SDE-1726-SM-6LPJS 50-59 years, female 29.9
GTEX-16NGA-1626-SM-72D6M 40-49 years, female 29.8
GTEX-Y3IK-2226-SM-4YCD4 50-59 years, female 28.6
GTEX-1LGOU-1126-SM-D3LAI 20-29 years, female 28.5
GTEX-11P81-2126-SM-5HL6N 30-39 years, female 27.9
GTEX-17F9Y-2326-SM-7DUFP 70-79 years, female 26.9
GTEX-Q734-1426-SM-DTXFX 40-49 years, female 25.3
GTEX-1LVAN-1626-SM-CNPQ7 50-59 years, female 24.4
GTEX-SE5C-1126-SM-4BRWZ 40-49 years, female 23.2
GTEX-S7SF-1426-SM-4AT5A 20-29 years, female 22.3
GTEX-ZXES-0626-SM-5E45P 30-39 years, female 22.1
GTEX-1MA7W-1226-SM-HL9SB 20-29 years, female 21.9
GTEX-ZAJG-2926-SM-5HL8P 50-59 years, female 21.3
GTEX-ZC5H-2226-SM-4WAWS 40-49 years, female 21.2
GTEX-1GF9U-1926-SM-7P8TZ 40-49 years, female 20.8
GTEX-14PKU-1326-SM-6871B 40-49 years, female 19.9
GTEX-14AS3-1726-SM-5RQJV 40-49 years, female 18.7
GTEX-11I78-2026-SM-5987C 50-59 years, female 16.9
GTEX-1IDJU-1026-SM-AHZ2U 60-69 years, female 16.6
GTEX-1MCYP-1326-SM-EV7AD 20-29 years, female 15.2
GTEX-ZZPU-2226-SM-5EGIV 50-59 years, female 13.1
GTEX-14PN3-1626-SM-6AJAV 60-69 years, female 12.9
GTEX-S341-1226-SM-4AD5S 40-49 years, female 12.9
GTEX-132AR-1626-SM-5EGHP 50-59 years, female 7.6
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VAGINA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

95.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Vagina
Scaled Tags Per Million: 95.9
FF:10204-103F6 68 years, female 95.9

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