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TISSUE RETINA Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE
MIDBRAIN OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
Dictionary
Tissue proteome
Eye
Retina
Tissue methods
RETINA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:419.7 nTPM
GTEx:419.7 nTPM
FANTOM5:190.1 Scaled Tags Per Million
EYE - SINGLE CELL RNA EXPRESSION
Explore single cell type data

RETINA - Annotated protein expression
Pending normal tissue analysis

RETINA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

419.7
GTEx sample id Sample description nTPM
Retina
Average nTPM: 419.7
Samples: 105

Max nTPM: 659.4
Min nTPM: 285.0
Std nTPM: 73.3
Median nTPM:
491_1 89 years, female 659.4
35_1 74 years, female 610.4
162_1 79 years, female 554.9
137_1 83 years, male 553.3
466_1 57 years, female 535.8
495_1 57 years, female 534.2
308_1 70 years, female 519.7
379_1 60 years, male 518.2
145_1 84 years, male 517.9
321_1 62 years, female 517.1
384_1 83 years, male 512.9
315_1 62 years, female 511.5
126_1 63 years, male 507.6
237_1 82 years, male 505.1
142_1 61 years, female 503.0
375_1 74 years, female 502.5
139_1 64 years, female 501.2
307_1 66 years, female 497.4
2_1 77 years, female 492.4
447_1 81 years, male 489.9
229_1 69 years, female 487.6
117_1 61 years, male 485.5
17_1 71 years, male 481.3
41_1 94 years, female 480.8
452_1 88 years, female 480.5
396_1 62 years, male 478.4
217_1 76 years, male 477.6
311_1 78 years, male 472.1
376_1 75 years, female 470.0
288_1 66 years, female 460.7
518_1 75 years, female 455.4
109_1 81 years, female 450.1
389_1 86 years, female 448.6
4_1 88 years, female 448.0
501_1 88 years, male 445.6
153_1 70 years, female 443.0
119_1 70 years, female 442.4
322_1 76 years, male 442.1
348_1 84 years, male 441.8
89_1 63 years, male 440.6
490_1 67 years, female 440.1
120_1 70 years, female 439.3
6_1 73 years, female 438.8
355_1 70 years, female 437.9
316_1 62 years, male 436.6
377_1 82 years, female 434.5
266_1 85 years, male 433.9
246_1 77 years, male 431.9
394_1 75 years, female 428.3
415_1 77 years, female 424.7
414_1 84 years, female 422.9
499_1 55 years, female 421.9
218_1 71 years, female 418.8
173_1 67 years, male 413.9
413_1 59 years, female 412.1
42_1 85 years, male 410.1
335_1 73 years, female 408.7
189_1 76 years, male 402.6
386_1 76 years, male 400.3
81_1 67 years, male 399.7
468_1 89 years, male 398.0
405_1 91 years, male 397.6
320_1 89 years, female 396.5
317_1 60 years, male 396.1
314_1 67 years, male 387.7
43_1 64 years, female 387.5
115_1 83 years, male 385.5
526_1 61 years, male 385.5
291_1 76 years, male 381.9
347_1 72 years, male 380.9
149_1 88 years, male 380.4
9_1 66 years, female 379.9
351_1 91 years, male 377.6
319_1 81 years, male 375.1
404_1 82 years, female 375.0
503_1 68 years, male 369.8
99_1 64 years, male 369.2
265_1 87 years, male 368.6
295_1 61 years, female 367.7
18_1 88 years, male 366.9
32_1 67 years, male 365.1
292_1 71 years, male 361.7
318_1 68 years, male 361.6
254_1 77 years, female 359.5
264_1 73 years, female 356.4
324_1 76 years, male 354.3
243_1 75 years, male 347.3
177_1 74 years, male 347.2
251_1 78 years, male 337.0
480_1 63 years, male 332.9
313_1 79 years, female 332.3
506_1 65 years, male 331.7
517_1 88 years, male 330.9
286_1 68 years, female 329.3
353_1 82 years, female 325.2
354_1 81 years, female 324.9
349_1 83 years, male 318.3
406_1 79 years, male 311.6
352_1 62 years, male 309.2
163_1 78 years, male 304.1
350_1 84 years, female 300.8
172_1 72 years, female 299.4
293_1 68 years, female 291.8
356_1 87 years, female 285.1
425_1 59 years, female 285.0
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RETINA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

190.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Retina
Scaled Tags Per Million: 190.1
FF:10030-101E3 24-65 years, mixed 190.1

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