We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
PARVB
HPA
RESOURCES
  • TISSUE
  • BRAIN
  • SINGLE CELL
  • SUBCELLULAR
  • CANCER
  • BLOOD
  • CELL LINE
  • STRUCTURE
  • INTERACTION
ABOUT
  • INTRODUCTION
  • HISTORY
  • ORGANIZATION
  • PUBLICATIONS
  • ACKNOWLEDGMENTS
  • CONTACT
NEWS
  • NEWS ARTICLES
  • PRESS ROOM
LEARN
  • DICTIONARY
  • PROTEIN CLASSES
  • PROTEIN EVIDENCE
  • METHODS
  • EDUCATIONAL VIDEOS
DATA
  • DOWNLOADABLE DATA
  • PUBLICATION DATA
  • RELEASE HISTORY
HELP
  • HELP & FAQ
  • ANTIBODY AVAILABILITY
  • DISCLAIMER
  • PRIVACY STATEMENT
  • LICENCE & CITATION
Fields »
Search result

Field
Term
Gene name
Class
Subclass
Category
Keyword
Chromosome
External id
Tissue
Cell type
Expression
Antibody panel
Tissue
Main location
Patient ID
Annotation
Tissue
Category
Tau score
Tissue
Category
Tau score
Cluster
Reliability
Brain region
Category
Tau score
Brain region
Category
Tau score
Brain region
Category
Tau score
Cluster
Reliability
Cell type
Category
Tau score
Cell type group
Category
Tau score
Single cell
Category
Tau score
Single cell
Category
Tau score
Cell type
Category
Tau score
Cell type
Category
Tau score
Cell lineage
Category
Tau score
Annotation
Annotation
Annotation
Tissue
Cell type
Enrichment
Cluster
Cluster
Location
Searches
Location
Cell line
Class
Type
Phase
Reliability
Cancer
Prognosis
Cancer
Category
Cancer
Category
Tau score
Cluster
Variants
Interacting gene (ensg_id)
Type
Number of interactions
Pathway
ipTM
Category
Category
Category
Category
Validation
Validation
Validation
Validation
Antibodies
Data type
Column


  • SUMMARY

  • TISSUE

  • BRAIN

  • SINGLE CELL

  • SUBCELL

  • CANCER

  • BLOOD

  • CELL LINE

  • STRUCTURE

  • INTERACTION

  • PARVB
TISSUE PRIMARY DATA PUTAMEN Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
NASOPHARYNX ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Tissue proteome
Tissue methods
PUTAMEN - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

HPA Brain:35.1 nTPM
GTEx:16.9 nTPM
FANTOM5:26.4 Scaled Tags Per Million
Pig:4.0 nTPM

PUTAMEN - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

35.1
Sample id Sample description nTPM
Putamen
nTPM: 35.1
1838 Male, age 80, right hemisphere 39.8
2466 Female, age 79, unknown 38.3
1937 Female, age 91, right hemisphere 37.2
2647 Male, age 75, left hemisphere 34.4
2489 Female, age 72, unknown 32.8
2482 Female, age 94, left hemisphere 32.6
1829 Male, age 74, unknown 30.7

PUTAMEN - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

16.9
GTEx sample id Sample description nTPM
Brain - Putamen (basal ganglia)
Average nTPM: 16.9
Samples: 254

Max nTPM: 75.8
Min nTPM: 7.1
Std nTPM: 6.7
Median nTPM: 15.5
GTEX-16XZZ-0011-R7b-SM-7MGVT 60-69 years, male 75.8
GTEX-1E2YA-0011-R7a-SM-CJI1Z 50-59 years, male 51.4
GTEX-1R46S-0011-R7b-SM-EXUTH 60-69 years, female 43.4
GTEX-1EH9U-0011-R7a-SM-9QEGU 60-69 years, male 35.9
GTEX-NPJ7-0011-R7a-SM-EV79B 60-69 years, female 33.9
GTEX-ZAJG-0011-R7a-SM-GQ1CU 50-59 years, female 32.7
GTEX-1CB4H-0011-R7b-SM-CJI27 60-69 years, female 32.2
GTEX-13N2G-0011-R7a-SM-5MR42 60-69 years, male 29.9
GTEX-11EMC-0011-R7a-SM-GJ3PL 60-69 years, female 29.0
GTEX-1JMQL-0011-R7b-SM-F649W 50-59 years, female 28.8
GTEX-1KD5A-0011-R7a-SM-F3K5Y 50-59 years, male 28.3
GTEX-11O72-0011-R7b-SM-GINA9 40-49 years, male 27.8
GTEX-1F52S-0011-R7b-SM-9QEH8 60-69 years, female 27.4
GTEX-14LZ3-0011-R7a-SM-69LQN 60-69 years, female 27.0
GTEX-1F75B-0011-R7a-SM-ARU84 50-59 years, male 26.1
GTEX-1ICLZ-0011-R7a-SM-ARZLU 60-69 years, male 25.6
GTEX-13PVQ-0011-R7a-SM-5L3G3 50-59 years, male 25.3
GTEX-1O9I2-0011-R7a-SM-F2TAI 50-59 years, male 25.2
GTEX-17EVQ-0011-R7a-SM-7EWDA 70-79 years, male 24.9
GTEX-1GF9W-0011-R7b-SM-9QEIF 60-69 years, male 24.8
GTEX-1H23P-0011-R7b-SM-CKZP2 60-69 years, male 24.7
GTEX-17MF6-0011-R7b-SM-7LG6J 40-49 years, male 24.2
GTEX-1C64N-0011-R7a-SM-7IGOI 50-59 years, male 24.1
GTEX-1H3VE-0011-R7b-SM-CE6S9 40-49 years, male 24.1
GTEX-17F97-0011-R7b-SM-7MGVY 50-59 years, male 23.9
GTEX-1H4P4-0011-R7b-SM-ARU77 50-59 years, male 23.9
GTEX-13OVJ-0011-R7a-SM-5L3G1 50-59 years, female 23.8
GTEX-1H1DG-0011-R7b-SM-A96RR 70-79 years, male 23.6
GTEX-1LVAO-0011-R7a-SM-EYYWZ 60-69 years, male 23.6
GTEX-1N2EF-0011-R7a-SM-F2T9O 60-69 years, male 23.6
GTEX-1B996-0011-R7b-SM-7IGNT 60-69 years, male 23.3
GTEX-132Q8-0011-R7b-SM-5N9F1 60-69 years, male 23.0
GTEX-1IGQW-0011-R7a-SM-GPRXV 60-69 years, male 23.0
GTEX-1GN1U-0011-R7a-SM-CE6RE 50-59 years, female 22.8
GTEX-1GZ4I-0011-R7b-SM-ARU71 50-59 years, male 22.8
GTEX-ZVT3-0011-R7a-SM-57WCO 60-69 years, female 22.6
GTEX-13JVG-0011-R7b-SM-5MR3Q 60-69 years, male 22.5
GTEX-1HCU6-0011-R7b-SM-ARL77 60-69 years, female 22.5
GTEX-1GZ2Q-0011-R7b-SM-9OSWN 40-49 years, male 22.4
GTEX-11ZVC-0011-R7b-SM-GI4VH 50-59 years, female 22.2
GTEX-13OW5-0011-R7a-SM-5O9C9 60-69 years, male 21.9
GTEX-1QP6S-0011-R7b-SM-F3K5R 40-49 years, male 21.9
GTEX-X261-0011-R7A-SM-4E3JJ 50-59 years, male 21.7
GTEX-1445S-0011-R7b-SM-5PNUG 60-69 years, male 21.5
GTEX-1LH75-0011-R7a-SM-EXOIF 50-59 years, female 21.3
GTEX-1PWST-0011-R7b-SM-F649N 70-79 years, male 21.3
GTEX-15G19-0011-R7b-SM-6M479 60-69 years, male 21.2
GTEX-13OVL-0011-R7a-SM-5P9GW 50-59 years, male 21.0
GTEX-13N1W-0011-R7b-SM-5MR4F 70-79 years, male 20.9
GTEX-17HII-0011-R7a-SM-79OMS 50-59 years, male 20.8
GTEX-1F6I4-0011-R7a-SM-CJI24 60-69 years, male 20.2
GTEX-13X6I-0011-R7b-SM-5PNWP 60-69 years, male 20.1
GTEX-1EN7A-0011-R7b-SM-9QEHX 40-49 years, male 19.9
GTEX-1RDX4-0011-R7b-SM-F2TBJ 50-59 years, female 19.9
GTEX-WHSE-0011-R7A-SM-3P5YZ 20-29 years, male 19.9
GTEX-13FHO-0011-R7b-SM-5LZXD 60-69 years, male 19.8
GTEX-11ZU8-0011-R7a-SM-GJ3Q1 60-69 years, male 19.5
GTEX-11H98-0011-R7a-SM-GHWOI 50-59 years, male 19.2
GTEX-13QIC-0011-R7b-SM-GIN9M 60-69 years, female 19.2
GTEX-16Z82-0011-R7a-SM-7MKGJ 60-69 years, male 19.2
GTEX-13CZV-0011-R7b-SM-5LZXH 60-69 years, male 19.0
GTEX-13OVH-0011-R7a-SM-GI4WY 70-79 years, male 19.0
GTEX-ZYFD-0011-R7a-SM-GPI8Z 50-59 years, male 19.0
GTEX-12ZZW-0011-R7a-SM-5DUWC 50-59 years, male 18.9
GTEX-1F48J-0011-R7a-SM-CJI2G 50-59 years, female 18.9
GTEX-1I1GS-0011-R7a-SM-CM2T6 60-69 years, male 18.9
GTEX-ZYY3-0011-R7a-SM-H7OGI 60-69 years, female 18.8
GTEX-11TTK-0011-R7b-SM-DNZZZ 60-69 years, female 18.7
GTEX-1IKOH-0011-R7b-SM-CKZPH 60-69 years, female 18.7
GTEX-1LVA9-0011-R7a-SM-EYYWG 50-59 years, male 18.7
GTEX-1192W-0011-R7a-SM-GJ3PS 60-69 years, male 18.3
GTEX-14PN4-0011-R7b-SM-69LQQ 50-59 years, male 18.2
GTEX-N7MT-0011-R7a-SM-2I3FZ 60-69 years, female 18.0
GTEX-ZV68-0011-R7a-SM-51MT4 50-59 years, female 17.9
GTEX-12ZZZ-0011-R7b-SM-5EGLE 60-69 years, male 17.7
GTEX-139TS-0011-R7a-SM-5K7X7 60-69 years, male 17.7
GTEX-1LSNL-0011-R7a-SM-EYYWI 50-59 years, male 17.5
GTEX-T5JC-0011-R7A-SM-32PME 20-29 years, male 17.5
GTEX-X4EP-0011-R7B-SM-4PQZW 60-69 years, female 17.5
GTEX-14BIN-0011-R7b-SM-5S2RI 50-59 years, female 17.4
GTEX-1IY9M-0011-R7a-SM-D4P49 60-69 years, male 17.4
GTEX-ZF28-0011-R7a-SM-4WKF5 60-69 years, male 17.4
GTEX-11ZTS-0011-R7a-SM-GI4XD 60-69 years, female 17.2
GTEX-14C5O-0011-R7b-SM-5YYAH 60-69 years, male 17.2
GTEX-1117F-0011-R7a-SM-H65ZK 60-69 years, female 17.1
GTEX-ZE9C-0011-R7a-SM-4WWCX 60-69 years, male 17.1
GTEX-131YS-0011-R7a-SM-5IJDA 60-69 years, female 17.0
GTEX-13FHP-0011-R7b-SM-5LZYI 50-59 years, male 17.0
GTEX-1AX9I-0011-R7b-SM-7P8Q3 60-69 years, male 17.0
GTEX-ZAB4-0011-R7a-SM-4SOKE 40-49 years, male 17.0
GTEX-1J8Q2-0011-R7a-SM-CKZPF 60-69 years, male 16.9
GTEX-11DZ1-0011-R7a-SM-DNZZH 50-59 years, male 16.8
GTEX-1F75A-0011-R7b-SM-9QEHE 50-59 years, male 16.8
GTEX-15RJE-0011-R7a-SM-7DHL9 40-49 years, male 16.7
GTEX-17HG3-0011-R7b-SM-7EPGR 30-39 years, female 16.7
GTEX-15DCD-0011-R7b-SM-6LPID 70-79 years, female 16.6
GTEX-15DYW-0011-R7a-SM-7KULG 60-69 years, female 16.6
GTEX-1A8G6-0011-R7b-SM-7MXTV 60-69 years, male 16.6
GTEX-1HCVE-0011-R7b-SM-A9G1I 50-59 years, male 16.6
GTEX-1J1OQ-0011-R7b-SM-H7OGB 40-49 years, female 16.6
GTEX-12WSM-0011-R7b-SM-5EGLD 60-69 years, male 16.4
GTEX-18465-0011-R7b-SM-7LG6V 50-59 years, male 16.4
GTEX-1N2DW-0011-R7a-SM-EY5YE 50-59 years, male 16.4
GTEX-12WSF-0011-R7b-SM-5HL99 70-79 years, male 16.3
GTEX-183WM-0011-R7b-SM-731AX 70-79 years, female 16.3
GTEX-1JMLX-0011-R7a-SM-EY5ZK 50-59 years, male 16.3
GTEX-1JMOU-0011-R7b-SM-EY5YH 60-69 years, female 16.3
GTEX-1JMPZ-0011-R7b-SM-F2TBB 30-39 years, male 16.3
GTEX-QVJO-0011-R7A-SM-G8W5W 60-69 years, female 16.3
GTEX-13O3O-0011-R7b-SM-5P9GZ 60-69 years, female 16.2
GTEX-1JJ6O-0011-R7b-SM-EXUTB 60-69 years, male 16.2
GTEX-13QJC-0011-R7b-SM-5PNUM 60-69 years, female 16.0
GTEX-15CHQ-0011-R7b-SM-D4P1Q 60-69 years, male 16.0
GTEX-1GMRU-0011-R7b-SM-A96TJ 50-59 years, male 16.0
GTEX-1NV8Z-0011-R7a-SM-F3K4J 60-69 years, male 16.0
GTEX-11DYG-0011-R7b-SM-EXUS6 60-69 years, male 15.9
GTEX-1B8L1-0011-R7b-SM-9OSVK 60-69 years, male 15.9
GTEX-1313W-0011-R7b-SM-5DUWL 50-59 years, female 15.8
GTEX-14E6D-0011-R7b-SM-G9ERK 50-59 years, male 15.7
GTEX-1GMR8-0011-R7b-SM-CJI2I 50-59 years, female 15.7
GTEX-1JMQJ-0011-R7b-SM-F2TA7 50-59 years, male 15.7
GTEX-1JMQK-0011-R7b-SM-EXUTF 60-69 years, male 15.7
GTEX-WVLH-0011-R7A-SM-3MJFB 50-59 years, male 15.7
GTEX-13OW8-0011-R7a-SM-5L3FP 60-69 years, male 15.6
GTEX-1KWVE-0011-R7b-SM-F6486 30-39 years, male 15.6
GTEX-11ONC-0011-R7b-SM-DO93J 60-69 years, male 15.5
GTEX-11PRG-0011-R7a-SM-DNZZT 50-59 years, male 15.5
GTEX-13X6K-0011-R7b-SM-5P9K7 60-69 years, female 15.5
GTEX-1EX96-0011-R7a-SM-9OSVW 50-59 years, male 15.5
GTEX-1GN2E-0011-R7b-SM-9QEIJ 60-69 years, male 15.4
GTEX-1QMI2-0011-R7a-SM-F648Q 60-69 years, male 15.4
GTEX-XLM4-0011-R7A-SM-4AT5L 60-69 years, male 15.4
GTEX-13O3Q-0011-R7a-SM-5KM38 50-59 years, male 15.3
GTEX-11ZUS-0011-R7a-SM-GI4X5 30-39 years, male 15.2
GTEX-145LS-0011-R7a-SM-5PNWM 60-69 years, female 15.2
GTEX-14PJM-0011-R7a-SM-6AJBX 50-59 years, female 15.2
GTEX-1HB9E-0011-R7b-SM-A9G1Q 50-59 years, male 15.2
GTEX-1HGF4-0011-R7a-SM-A96S2 60-69 years, male 15.2
GTEX-12WSI-0011-R7b-SM-5GU78 50-59 years, male 15.1
GTEX-13RTJ-0011-R7b-SM-5P9JS 60-69 years, male 15.1
GTEX-1JN6P-0011-R7a-SM-F2TA5 60-69 years, male 15.1
GTEX-144GO-0011-R7b-SM-5S2TT 60-69 years, male 15.0
GTEX-11NV4-0011-R7a-SM-57WDH 60-69 years, male 14.9
GTEX-1IDJH-0011-R7a-SM-A9SM1 70-79 years, male 14.9
GTEX-ZAK1-0011-R7a-SM-H7OH1 50-59 years, female 14.8
GTEX-17EVP-0011-R7a-SM-7LTAN 40-49 years, male 14.7
GTEX-1MA7X-0011-R7b-SM-EYYWS 60-69 years, male 14.7
GTEX-13NYB-0011-R7a-SM-5MR5D 40-49 years, male 14.6
GTEX-1E1VI-0011-R7b-SM-9QEGR 50-59 years, male 14.6
GTEX-1H3NZ-0011-R7a-SM-A9SKD 60-69 years, male 14.6
GTEX-1LSVX-0011-R7b-SM-F2T9T 60-69 years, male 14.6
GTEX-14PJO-0011-R7a-SM-664NR 60-69 years, male 14.5
GTEX-1I1GQ-0011-R7a-SM-CJI41 50-59 years, male 14.5
GTEX-117XS-0011-R7a-SM-GI4VO 60-69 years, male 14.3
GTEX-145MH-0011-R7a-SM-5PNWH 50-59 years, male 14.3
GTEX-1P4AB-0011-R7a-SM-F2TAP 50-59 years, male 14.3
GTEX-PVOW-0011-R7A-SM-H6Q8Q 40-49 years, male 14.3
GTEX-12WSA-0011-R7b-SM-5GU5U 60-69 years, male 14.2
GTEX-14JFF-0011-R7b-SM-G9ERI 60-69 years, male 14.2
GTEX-ZDXO-0011-R7a-SM-4WWCU 60-69 years, male 14.2
GTEX-15SHU-0011-R7a-SM-GQ1DL 40-49 years, female 14.1
GTEX-1GN73-0011-R7a-SM-CJI2U 60-69 years, male 14.1
GTEX-11GS4-0011-R7a-SM-GJ3RK 60-69 years, male 14.0
GTEX-WL46-0011-R7A-SM-3LK7X 50-59 years, male 14.0
GTEX-1B8SF-0011-R7b-SM-9OSVM 60-69 years, male 13.8
GTEX-1EU9M-0011-R7b-SM-9OSVU 60-69 years, male 13.8
GTEX-WZTO-0011-R7B-SM-4E3IS 40-49 years, male 13.8
GTEX-12126-0011-R7a-SM-GJ3Q2 20-29 years, male 13.7
GTEX-12ZZX-0011-R7b-SM-5DUVV 40-49 years, female 13.7
GTEX-ZUA1-0011-R7b-SM-4YCDP 40-49 years, male 13.7
GTEX-13VXU-0011-R7b-SM-5SI72 50-59 years, male 13.6
GTEX-1EMGI-0011-R7b-SM-9QEH5 60-69 years, male 13.6
GTEX-13OW6-0011-R7b-SM-5L3H4 50-59 years, male 13.5
GTEX-145MG-0011-R7b-SM-5P9JY 50-59 years, male 13.5
GTEX-1F75W-0011-R7a-SM-9QEI6 60-69 years, male 13.5
GTEX-1OJC4-0011-R7a-SM-EYYX4 50-59 years, female 13.5
GTEX-1R9K4-0011-R7b-SM-F3K58 60-69 years, male 13.5
GTEX-111FC-0011-R7a-SM-GIN8V 60-69 years, male 13.4
GTEX-12WSD-0011-R7b-SM-5PNWE 60-69 years, female 13.4
GTEX-13G51-0011-R7b-SM-5LZXG 60-69 years, male 13.4
GTEX-13S7M-0011-R7a-SM-5O9DK 60-69 years, female 13.4
GTEX-144GL-0011-R7b-SM-5P9HX 50-59 years, male 13.4
GTEX-147GR-0011-R7a-SM-5S2RP 60-69 years, male 13.4
GTEX-1PIIG-0011-R7b-SM-F2T9Y 30-39 years, male 13.4
GTEX-11DXW-0011-R7b-SM-DO119 40-49 years, male 13.3
GTEX-1CB4G-0011-R7b-SM-9QEGP 60-69 years, male 13.3
GTEX-1R9PO-0011-R7b-SM-F342B 60-69 years, female 13.3
GTEX-Q2AG-0011-R7A-SM-2HMJP 40-49 years, female 13.3
GTEX-11GSO-0011-R7b-SM-H65ZV 60-69 years, male 13.2
GTEX-11NUK-0011-R7a-SM-DO93P 50-59 years, male 13.2
GTEX-1A3MX-0011-R7a-SM-7DUEM 60-69 years, male 13.2
GTEX-1IOXB-0011-R7b-SM-HAUZE 50-59 years, male 13.2
GTEX-14BMV-0011-R7b-SM-5YY9J 50-59 years, male 13.1
GTEX-17HHY-0011-R7a-SM-718A1 50-59 years, male 13.1
GTEX-1MJK2-0011-R7a-SM-EXUS4 50-59 years, male 13.1
GTEX-13112-0011-R7b-SM-5DUVW 50-59 years, male 13.0
GTEX-13FLV-0011-R7b-SM-5K7WW 50-59 years, male 13.0
GTEX-1HFI6-0011-R7b-SM-CM2SS 40-49 years, male 13.0
GTEX-13JUV-0011-R7b-SM-5LZZG 40-49 years, female 12.9
GTEX-1C6WA-0011-R7b-SM-7P8S8 60-69 years, male 12.9
GTEX-1B933-0011-R7a-SM-7DUGX 50-59 years, female 12.8
GTEX-1IKK5-0011-R7b-SM-A9G39 60-69 years, male 12.8
GTEX-1HT8W-0011-R7b-SM-CMKH8 30-39 years, male 12.7
GTEX-1H1ZS-0011-R7a-SM-CL54P 70-79 years, male 12.6
GTEX-11WQC-0011-R7b-SM-5BC7A 60-69 years, male 12.5
GTEX-12ZZY-0011-R7a-SM-5EGLB 60-69 years, male 12.5
GTEX-1GF9V-0011-R7a-SM-CJI2R 60-69 years, male 12.5
GTEX-WWYW-0011-R7A-SM-3NB3H 50-59 years, female 12.5
GTEX-1H3O1-0011-R7a-SM-CE6SJ 60-69 years, male 12.4
GTEX-1IKJJ-0011-R7a-SM-ARZLH 60-69 years, male 12.4
GTEX-11DXY-0011-R7a-SM-DO11L 60-69 years, male 12.3
GTEX-1GTWX-0011-R7a-SM-A96RO 60-69 years, male 12.3
GTEX-1LG7Y-0011-R7a-SM-F341Q 50-59 years, male 12.2
GTEX-16GPK-0011-R7b-SM-H7OF8 60-69 years, male 12.1
GTEX-1N2EE-0011-R7b-SM-F341E 60-69 years, male 12.0
GTEX-13FLW-0011-R7b-SM-5L3EZ 50-59 years, male 11.9
GTEX-1EKGG-0011-R7a-SM-CKZNN 60-69 years, male 11.9
GTEX-139TT-0011-R7b-SM-5J2MN 60-69 years, male 11.8
GTEX-YFC4-0011-R7b-SM-4V6E2 40-49 years, female 11.8
GTEX-13X6J-0011-R7b-SM-5PNUC 50-59 years, male 11.6
GTEX-1192X-0011-R7b-SM-DNZZC 50-59 years, male 11.5
GTEX-15ER7-0011-R7a-SM-6M46N 20-29 years, female 11.5
GTEX-1I1GV-0011-R7a-SM-ARU6R 60-69 years, male 11.4
GTEX-1MCQQ-0011-R7a-SM-F649U 60-69 years, male 11.3
GTEX-11GSP-0011-R7b-SM-57WC3 60-69 years, female 11.2
GTEX-14E7W-0011-R7b-SM-5ZZV4 70-79 years, male 11.0
GTEX-Y8DK-0011-R7A-SM-4SOJZ 60-69 years, male 11.0
GTEX-14ABY-0011-R7b-SM-5PNWS 50-59 years, male 10.9
GTEX-14ASI-0011-R7b-SM-5YY9G 60-69 years, male 10.9
GTEX-QMR6-0011-R7A-SM-32PKL 50-59 years, male 10.9
GTEX-11EI6-0011-R7a-SM-GINAN 60-69 years, male 10.8
GTEX-11OF3-0011-R7a-SM-57WCG 60-69 years, male 10.8
GTEX-ZE7O-0011-R7a-SM-57WCU 50-59 years, female 10.8
GTEX-Z93S-0011-R7b-SM-4RGNK 50-59 years, male 10.7
GTEX-ZXG5-0011-R7b-SM-57WCC 60-69 years, male 10.7
GTEX-15EO6-0011-R7a-SM-6M46Q 50-59 years, male 10.6
GTEX-14JG1-0011-R7b-SM-5YYAV 40-49 years, male 10.4
GTEX-YJ89-0011-R7a-SM-4V6GO 60-69 years, male 10.4
GTEX-13CF2-0011-R7b-SM-5K7UV 60-69 years, male 10.3
GTEX-1H1CY-0011-R7a-SM-CJI32 60-69 years, female 10.3
GTEX-QDT8-0011-R7A-SM-32PKF 30-39 years, female 10.3
GTEX-12WSC-0011-R7b-SM-5LU9L 50-59 years, male 10.1
GTEX-1RQEC-0011-R7b-SM-EY5ZS 60-69 years, male 10.1
GTEX-T6MN-0011-R7A-SM-32QP5 50-59 years, male 10.1
GTEX-12WSE-0011-R7a-SM-5PNWF 20-29 years, male 10.0
GTEX-RNOR-0011-R7A-SM-2TF4V 50-59 years, female 10.0
GTEX-13OW7-0011-R7b-SM-H6613 50-59 years, male 9.9
GTEX-ZZPT-0011-R7a-SM-H7OH8 50-59 years, male 9.8
GTEX-1I1CD-0011-R7a-SM-CMKHA 60-69 years, female 8.9
GTEX-13FXS-0011-R7a-SM-5L3FC 50-59 years, male 8.7
GTEX-16YQH-0011-R7a-SM-79ON1 30-39 years, male 8.7
GTEX-1PPGY-0011-R7b-SM-F33YV 60-69 years, male 8.4
GTEX-ZVZQ-0011-R7b-SM-57WBB 60-69 years, female 7.2
GTEX-X4XX-0011-R7A-SM-46MWR 60-69 years, male 7.1
Show allShow less

PUTAMEN - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

26.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Putamen
Scaled Tags Per Million: 26.4
FF:10176-103C5 60 years, female 26.4

PUTAMEN - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

4.0
Pig sample Sample description nTPM
Putamen
nTPM: 4.0
Samples: 4

Max nTPM: 5.3
Min nTPM: 3.2
Sample A Female 5.3
Sample B Female 3.2
Sample C Male 3.6
Sample D Male 3.8

Contact

  • NEWS ARTICLES
  • PRESS ROOM

The Project

  • INTRODUCTION
  • ORGANIZATION
  • PUBLICATIONS

The Human Protein Atlas

  • DOWNLOADABLE DATA
  • LICENCE & CITATION
  • HELP & FAQ
KAW logo The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.

Facebook logo X logo Bluesky logo Linkedin logo RSS feed logo contact@proteinatlas.org
GCBR logo Elixir core logo SciLifeLab logo Uppsala university logo KI logo KTH logo